Wall clock time and date at job start Tue Mar 31 2020 22:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47384 * 2 1 4 4 C 1.53002 * 109.47104 * 120.00458 * 2 1 3 5 5 C 1.50706 * 109.46657 * 294.99610 * 4 2 1 6 6 C 1.38250 * 119.97322 * 90.00389 * 5 4 2 7 7 C 1.38193 * 120.02211 * 179.74633 * 6 5 4 8 8 C 1.38461 * 119.97663 * 0.24847 * 7 6 5 9 9 F 1.35105 * 120.02137 * 180.02562 * 8 7 6 10 10 C 1.38455 * 119.94921 * 0.02562 * 8 7 6 11 11 C 1.38203 * 119.97330 * 0.02562 * 10 8 7 12 12 C 1.50702 * 109.46942 * 239.99712 * 2 1 3 13 13 O 1.21282 * 119.99991 * 245.48649 * 12 2 1 14 14 N 1.34782 * 119.99685 * 65.49468 * 12 2 1 15 15 C 1.46498 * 120.00012 * 4.91794 * 14 12 2 16 16 C 1.46499 * 119.99848 * 184.92342 * 14 12 2 17 17 C 1.53003 * 109.47215 * 89.99481 * 16 14 12 18 18 H 1.08998 * 109.46865 * 60.00209 * 17 16 14 19 19 O 1.42897 * 109.47006 * 299.99767 * 17 16 14 20 20 C 1.53000 * 109.46825 * 180.02562 * 17 16 14 21 21 N 1.46499 * 109.46895 * 185.00046 * 20 17 16 22 22 C 1.36943 * 119.99903 * 179.97438 * 21 20 17 23 23 H 1.07993 * 119.99987 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99635 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00108 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99825 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47020 * 90.00152 * 26 24 22 28 28 H 1.48493 * 109.47322 * 210.00480 * 26 24 22 29 29 H 1.48499 * 109.47103 * 330.00255 * 26 24 22 30 30 H 1.08997 * 109.47367 * 190.12148 * 1 2 3 31 31 H 1.09004 * 109.47377 * 310.11912 * 1 2 3 32 32 H 1.09005 * 109.47209 * 70.11962 * 1 2 3 33 33 H 1.09000 * 109.47227 * 175.00428 * 4 2 1 34 34 H 1.08997 * 109.47715 * 54.99447 * 4 2 1 35 35 H 1.08001 * 119.98747 * 0.02562 * 6 5 4 36 36 H 1.08003 * 120.00862 * 180.27318 * 7 6 5 37 37 H 1.08000 * 120.01117 * 179.97438 * 10 8 7 38 38 H 1.08002 * 119.98128 * 180.02562 * 11 10 8 39 39 H 1.08997 * 109.46855 * 95.86238 * 15 14 12 40 40 H 1.08998 * 109.47115 * 215.85751 * 15 14 12 41 41 H 1.08994 * 109.47233 * 335.85744 * 15 14 12 42 42 H 1.08995 * 109.47355 * 210.00037 * 16 14 12 43 43 H 1.08998 * 109.47033 * 329.99794 * 16 14 12 44 44 H 0.96693 * 114.00327 * 299.99556 * 19 17 16 45 45 H 1.09003 * 109.47495 * 305.00143 * 20 17 16 46 46 H 1.08996 * 109.47861 * 65.00302 * 20 17 16 47 47 H 0.97003 * 120.00406 * 0.02562 * 21 20 17 48 48 H 0.97004 * 119.99712 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0570 2.4766 6 6 0.4353 -0.2055 3.0994 7 6 0.0711 0.5040 4.2280 8 6 0.9122 1.4816 4.7319 9 9 0.5573 2.1755 5.8355 10 6 2.1172 1.7475 4.1040 11 6 2.4789 1.0375 2.9749 12 6 2.0323 -0.7105 -1.2305 13 8 2.6453 -1.7513 -1.1219 14 7 1.8004 -0.1891 -2.4515 15 6 1.1557 1.1203 -2.5785 16 6 2.1930 -0.9317 -3.6517 17 6 1.0368 -1.8295 -4.0969 18 1 0.1644 -1.2150 -4.3190 19 8 0.7179 -2.7492 -3.0508 20 6 1.4471 -2.6056 -5.3500 21 7 0.3023 -3.3739 -5.8452 22 6 0.4321 -4.1508 -6.9655 23 1 1.3785 -4.1973 -7.4836 24 6 -0.6526 -4.8792 -7.4344 25 7 -1.8058 -4.8228 -6.8025 26 14 -0.4754 -5.9394 -8.9621 27 1 -0.0447 -7.3053 -8.5695 28 1 -1.7806 -6.0152 -9.6661 29 1 0.5400 -5.3406 -9.8652 30 1 -0.3634 -1.0116 0.1806 31 1 -0.3634 0.6622 0.7859 32 1 -0.3634 0.3495 -0.9665 33 1 3.1263 -0.7995 1.2056 34 1 1.6054 -1.7199 1.2952 35 1 -0.2204 -0.9684 2.7064 36 1 -0.8691 0.2957 4.7169 37 1 2.7738 2.5101 4.4960 38 1 3.4190 1.2445 2.4852 39 1 1.9178 1.8907 -2.6950 40 1 0.5024 1.1205 -3.4510 41 1 0.5671 1.3237 -1.6839 42 1 2.4364 -0.2303 -4.4496 43 1 3.0654 -1.5462 -3.4296 44 1 1.4497 -3.3296 -2.8006 45 1 1.7756 -1.9065 -6.1191 46 1 2.2627 -3.2860 -5.1053 47 1 -0.5479 -3.3318 -5.3800 48 1 -2.5637 -5.3321 -7.1300 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278839314.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:37 Heat of formation + Delta-G solvation = -118.414981 kcal Electronic energy + Delta-G solvation = -29028.772070 eV Core-core repulsion = 24804.526125 eV Total energy + Delta-G solvation = -4224.245944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.86643 -41.36725 -40.08319 -38.71770 -36.42273 -36.00427 -35.64855 -33.22017 -32.09793 -31.83887 -30.53795 -28.06686 -27.43895 -27.00986 -25.03986 -24.00615 -23.59265 -22.64801 -21.86363 -19.92623 -19.23734 -18.60764 -18.23621 -17.78391 -17.31158 -16.81595 -16.65423 -16.61990 -16.52155 -16.26086 -16.06778 -15.56801 -15.32779 -14.95001 -14.84073 -14.43462 -14.41910 -14.31946 -14.19572 -13.87320 -13.70178 -13.48191 -13.35414 -13.04974 -12.98978 -12.82762 -12.76080 -12.49568 -12.36351 -12.16835 -12.07312 -12.02595 -11.94673 -11.82029 -11.74463 -11.12992 -10.98285 -10.58433 -10.02006 -9.50968 -9.47288 -9.02258 -7.95698 -5.25579 0.16153 0.31086 1.45939 1.48644 1.56895 1.70376 2.08435 2.54963 2.63768 3.32714 3.35380 3.43835 3.56996 3.76885 3.78977 3.88701 3.97932 4.03244 4.06549 4.14109 4.23182 4.31870 4.36651 4.39880 4.43748 4.49108 4.56188 4.69996 4.77212 4.81039 4.83596 4.89610 4.91851 4.99622 5.04508 5.07870 5.20415 5.22035 5.24911 5.31968 5.36185 5.45786 5.55087 5.63737 5.96199 6.25145 6.47325 6.79087 7.27070 7.31530 8.07705 8.30616 9.27667 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026590 B = 0.001883 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.779663 B =14867.533553 C =15294.970843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 H 0.119 0.881 4 C -0.055 4.055 5 C -0.087 4.087 6 C -0.088 4.088 7 C -0.156 4.156 8 C 0.071 3.929 9 F -0.152 7.152 10 C -0.153 4.153 11 C -0.087 4.087 12 C 0.516 3.484 13 O -0.577 6.577 14 N -0.609 5.609 15 C 0.056 3.944 16 C 0.094 3.906 17 C 0.098 3.902 18 H 0.090 0.910 19 O -0.565 6.565 20 C 0.123 3.877 21 N -0.741 5.741 22 C -0.248 4.248 23 H 0.077 0.923 24 C -0.079 4.079 25 N -0.970 5.970 26 Si 0.977 3.023 27 H -0.288 1.288 28 H -0.294 1.294 29 H -0.266 1.266 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.375 0.625 45 H 0.040 0.960 46 H 0.020 0.980 47 H 0.374 0.626 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.752 19.766 21.411 30.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 H 0.137 0.863 4 C -0.093 4.093 5 C -0.088 4.088 6 C -0.106 4.106 7 C -0.174 4.174 8 C 0.052 3.948 9 F -0.131 7.131 10 C -0.171 4.171 11 C -0.105 4.105 12 C 0.306 3.694 13 O -0.456 6.456 14 N -0.340 5.340 15 C -0.086 4.086 16 C -0.030 4.030 17 C 0.037 3.963 18 H 0.107 0.893 19 O -0.370 6.370 20 C -0.004 4.004 21 N -0.383 5.383 22 C -0.380 4.380 23 H 0.095 0.905 24 C -0.271 4.271 25 N -0.620 5.620 26 Si 0.806 3.194 27 H -0.216 1.216 28 H -0.221 1.221 29 H -0.191 1.191 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.129 0.871 43 H 0.096 0.904 44 H 0.222 0.778 45 H 0.058 0.942 46 H 0.038 0.962 47 H 0.206 0.794 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.588 19.517 21.313 30.148 hybrid contribution -0.110 -1.060 -0.539 1.194 sum 8.477 18.458 20.774 29.054 Atomic orbital electron populations 1.22013 0.92107 1.02866 1.03638 1.21236 0.98127 1.01241 0.90787 0.86280 1.20313 1.01735 0.97726 0.89540 1.19939 0.94808 0.97083 0.96928 1.21128 0.96236 0.99102 0.94168 1.21320 1.01027 0.96780 0.98299 1.18013 0.96179 0.94718 0.85870 1.91474 1.92207 1.78104 1.51328 1.21346 0.95849 1.02572 0.97344 1.21149 1.00220 0.94181 0.94910 1.21110 0.78184 0.84777 0.85328 1.90645 1.42583 1.25445 1.86966 1.47747 1.60492 1.20659 1.05106 1.22377 0.98735 0.82578 1.04879 1.22008 0.96665 0.96213 0.88122 1.22392 0.98347 0.89779 0.85762 0.89250 1.86506 1.42862 1.52263 1.55387 1.21448 0.90245 0.93869 0.94840 1.42462 1.10443 1.54318 1.31099 1.19673 0.96520 1.19071 1.02744 0.90478 1.25649 0.95681 1.02799 1.02942 1.69851 1.02040 1.46861 1.43257 0.85086 0.76687 0.78553 0.79091 1.21567 1.22056 1.19108 0.93163 0.89723 0.90935 0.90441 0.91394 0.84162 0.83763 0.83275 0.83126 0.90319 0.90847 0.88225 0.87120 0.90397 0.77751 0.94239 0.96182 0.79425 0.94014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 7.91 71.98 0.57 -1.64 16 2 C -0.09 -1.44 1.88 -11.54 -0.02 -1.46 16 3 H 0.12 1.25 7.73 -2.39 -0.02 1.23 16 4 C -0.06 -0.90 4.13 29.85 0.12 -0.78 16 5 C -0.09 -1.19 4.73 -19.86 -0.09 -1.28 16 6 C -0.09 -1.20 8.24 22.26 0.18 -1.02 16 7 C -0.16 -2.19 10.03 22.31 0.22 -1.97 16 8 C 0.07 1.11 7.30 22.37 0.16 1.28 16 9 F -0.15 -2.75 17.27 44.97 0.78 -1.97 16 10 C -0.15 -1.92 10.03 22.31 0.22 -1.70 16 11 C -0.09 -1.01 9.70 22.26 0.22 -0.79 16 12 C 0.52 11.98 6.41 87.66 0.56 12.54 16 13 O -0.58 -17.87 14.68 -1.16 -0.02 -17.89 16 14 N -0.61 -12.53 2.83 -846.77 -2.39 -14.93 16 15 C 0.06 0.71 9.72 127.77 1.24 1.95 16 16 C 0.09 2.25 5.20 86.38 0.45 2.70 16 17 C 0.10 3.15 3.27 30.60 0.10 3.25 16 18 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 19 O -0.56 -21.03 12.20 -147.11 -1.79 -22.82 16 20 C 0.12 4.87 5.90 86.38 0.51 5.38 16 21 N -0.74 -38.78 5.55 -343.45 -1.91 -40.68 16 22 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 23 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 24 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 25 N -0.97 -61.04 13.06 21.65 0.28 -60.76 16 26 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 29 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 30 H 0.05 0.93 8.09 -2.39 -0.02 0.91 16 31 H 0.08 0.96 6.96 -2.39 -0.02 0.95 16 32 H 0.07 1.07 5.41 -2.38 -0.01 1.06 16 33 H 0.08 1.33 7.98 -2.39 -0.02 1.31 16 34 H 0.07 1.35 8.06 -2.39 -0.02 1.33 16 35 H 0.14 1.69 8.04 -2.91 -0.02 1.67 16 36 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.96 8.11 -2.39 -0.02 0.94 16 41 H 0.10 0.99 4.12 -2.39 -0.01 0.98 16 42 H 0.11 2.07 8.07 -2.39 -0.02 2.05 16 43 H 0.08 2.06 7.36 -2.39 -0.02 2.04 16 44 H 0.37 13.46 8.62 -74.06 -0.64 12.82 16 45 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.37 21.38 7.67 -92.71 -0.71 20.67 16 48 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -74.66 395.49 2.37 -72.29 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -0.36 Total: 38.95 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 5.76 Total: -1.04 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -4.02 Total: -116.37 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -1.81 Total: -40.71 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -74.66 2.37 -72.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278839314.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.122 kcal (2) G-P(sol) polarization free energy of solvation -74.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds