Wall clock time and date at job start Tue Mar 31 2020 22:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00396 * 2 1 4 4 C 1.52999 * 109.47258 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46975 * 65.70979 * 4 3 2 6 6 C 1.36934 * 119.99799 * 267.90481 * 5 4 3 7 7 H 1.08005 * 119.99870 * 142.25524 * 6 5 4 8 8 C 1.38810 * 120.00165 * 322.25897 * 6 5 4 9 9 N 1.31617 * 120.00161 * 156.38397 * 8 6 5 10 10 Si 1.86799 * 119.99929 * 336.38365 * 8 6 5 11 11 H 1.48493 * 109.47534 * 95.51111 * 10 8 6 12 12 H 1.48507 * 109.46921 * 215.51103 * 10 8 6 13 13 H 1.48502 * 109.47038 * 335.50707 * 10 8 6 14 14 C 1.46495 * 120.00058 * 87.90404 * 5 4 3 15 15 C 1.53007 * 109.47031 * 270.00149 * 14 5 4 16 16 N 1.46495 * 109.47031 * 180.02562 * 15 14 5 17 17 C 1.34778 * 120.00204 * 179.97438 * 16 15 14 18 18 O 1.21276 * 119.99860 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00318 * 179.97438 * 17 16 15 20 20 H 1.09000 * 109.47102 * 300.00492 * 19 17 16 21 21 C 1.53002 * 109.47129 * 60.00383 * 19 17 16 22 22 C 1.50701 * 109.47128 * 180.02562 * 19 17 16 23 23 C 1.38213 * 120.01100 * 299.99739 * 22 19 17 24 24 C 1.38224 * 120.02462 * 179.72423 * 23 22 19 25 25 C 1.38262 * 120.05373 * 0.02562 * 24 23 22 26 26 C 1.38175 * 120.02249 * 0.02562 * 25 24 23 27 27 C 1.38436 * 120.01248 * 119.72735 * 22 19 17 28 28 F 1.35104 * 120.02659 * 0.24892 * 27 22 19 29 29 H 1.09002 * 109.46777 * 300.00204 * 1 2 3 30 30 H 1.09005 * 109.46849 * 59.99316 * 1 2 3 31 31 H 1.08995 * 109.47254 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47238 * 59.99932 * 3 2 1 33 33 H 1.08998 * 109.47430 * 300.00263 * 3 2 1 34 34 H 1.08995 * 109.47599 * 305.70768 * 4 3 2 35 35 H 1.09000 * 109.47529 * 185.70678 * 4 3 2 36 36 H 0.97006 * 120.00291 * 179.97438 * 9 8 6 37 37 H 1.08993 * 109.47312 * 150.00234 * 14 5 4 38 38 H 1.09004 * 109.47501 * 29.99973 * 14 5 4 39 39 H 1.08995 * 109.47329 * 60.00315 * 15 14 5 40 40 H 1.09000 * 109.47276 * 300.00024 * 15 14 5 41 41 H 0.97006 * 120.00156 * 0.02562 * 16 15 14 42 42 H 1.09008 * 109.46736 * 299.99939 * 21 19 17 43 43 H 1.09004 * 109.47091 * 59.99562 * 21 19 17 44 44 H 1.08997 * 109.47205 * 180.02562 * 21 19 17 45 45 H 1.08007 * 119.98739 * 359.70601 * 23 22 19 46 46 H 1.08006 * 119.97307 * 180.02562 * 24 23 22 47 47 H 1.07999 * 119.99223 * 179.97438 * 25 24 23 48 48 H 1.08001 * 120.01576 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9779 0.5793 -1.2581 6 6 4.1403 -0.7776 -1.3454 7 1 3.8662 -1.2970 -2.2518 8 6 4.6572 -1.4855 -0.2691 9 7 4.3985 -2.7695 -0.1406 10 14 5.7200 -0.6156 0.9971 11 1 4.8781 -0.1966 2.1463 12 1 6.7810 -1.5400 1.4718 13 1 6.3460 0.5811 0.3798 14 6 4.2465 1.4257 -2.4232 15 6 2.9658 1.5827 -3.2456 16 7 3.2346 2.4286 -4.4111 17 6 2.2465 2.7061 -5.2846 18 8 1.1347 2.2559 -5.1056 19 6 2.5227 3.5767 -6.4833 20 1 2.8623 4.5573 -6.1496 21 6 3.6071 2.9278 -7.3459 22 6 1.2614 3.7313 -7.2933 23 6 0.6411 2.6170 -7.8261 24 6 -0.5189 2.7579 -8.5644 25 6 -1.0599 4.0133 -8.7712 26 6 -0.4409 5.1288 -8.2404 27 6 0.7205 4.9888 -7.4994 28 9 1.3258 6.0787 -6.9787 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8500 0.5581 0.8353 35 1 3.9785 2.1752 0.1028 36 1 4.7600 -3.2643 0.6114 37 1 5.0186 0.9632 -3.0380 38 1 4.5865 2.4061 -2.0895 39 1 2.1937 2.0452 -2.6309 40 1 2.6258 0.6023 -3.5793 41 1 4.1239 2.7884 -4.5545 42 1 4.5194 2.8164 -6.7597 43 1 3.2676 1.9472 -7.6795 44 1 3.8073 3.5578 -8.2126 45 1 1.0632 1.6358 -7.6658 46 1 -1.0032 1.8865 -8.9800 47 1 -1.9661 4.1223 -9.3485 48 1 -0.8634 6.1095 -8.4024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279055837.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:52 Heat of formation + Delta-G solvation = -74.205076 kcal Electronic energy + Delta-G solvation = -29726.699576 eV Core-core repulsion = 25504.370717 eV Total energy + Delta-G solvation = -4222.328859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.09700 -40.21440 -38.69186 -37.46484 -35.91693 -34.43924 -34.20365 -31.62762 -30.72416 -30.06348 -29.31785 -27.70382 -25.64745 -25.09740 -23.82647 -22.93410 -22.41499 -21.59355 -20.70480 -19.73055 -17.86480 -17.26607 -16.81346 -16.55487 -16.16534 -15.93182 -15.68855 -15.41644 -15.33375 -14.98439 -14.67292 -14.35563 -14.19838 -14.00590 -13.80883 -13.57651 -13.33752 -13.27905 -12.82935 -12.58563 -12.47938 -12.41698 -12.22437 -12.12153 -11.86010 -11.70643 -11.34991 -11.16192 -11.13857 -10.96256 -10.69963 -10.64169 -10.24996 -9.77125 -9.68834 -9.56676 -9.12263 -8.92789 -8.82962 -8.65253 -8.43247 -6.86869 -5.90774 -3.32858 0.95214 1.05562 2.76063 3.21785 3.35435 3.49132 3.52307 3.55375 4.05946 4.22683 4.48862 4.57689 4.61037 4.69930 4.83959 4.92073 4.95373 5.03244 5.09953 5.17204 5.40441 5.45586 5.54855 5.64285 5.67539 5.70886 5.77165 5.82422 5.85686 5.87568 5.94919 5.95442 6.02639 6.12423 6.16638 6.17381 6.21461 6.24901 6.31750 6.55052 6.59194 6.69968 6.75866 6.83472 7.67964 7.97334 8.12936 8.37098 8.45906 8.99970 9.77765 10.12337 11.24917 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016933 B = 0.002626 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.181459 B =10660.119911 C =11126.880391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.348 6.348 3 C 0.043 3.957 4 C 0.132 3.868 5 N -0.590 5.590 6 C -0.260 4.260 7 H 0.076 0.924 8 C 0.046 3.954 9 N -0.892 5.892 10 Si 0.872 3.128 11 H -0.286 1.286 12 H -0.302 1.302 13 H -0.271 1.271 14 C 0.140 3.860 15 C 0.096 3.904 16 N -0.723 5.723 17 C 0.514 3.486 18 O -0.534 6.534 19 C -0.076 4.076 20 H 0.106 0.894 21 C -0.139 4.139 22 C -0.097 4.097 23 C -0.056 4.056 24 C -0.131 4.131 25 C -0.093 4.093 26 C -0.158 4.158 27 C 0.102 3.898 28 F -0.140 7.140 29 H 0.026 0.974 30 H 0.031 0.969 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.261 0.739 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.397 0.603 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.130 0.870 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.830 16.085 -15.500 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C -0.036 4.036 4 C 0.006 3.994 5 N -0.312 5.312 6 C -0.388 4.388 7 H 0.093 0.907 8 C -0.155 4.155 9 N -0.533 5.533 10 Si 0.702 3.298 11 H -0.214 1.214 12 H -0.230 1.230 13 H -0.196 1.196 14 C 0.012 3.988 15 C -0.030 4.030 16 N -0.374 5.374 17 C 0.299 3.701 18 O -0.410 6.410 19 C -0.097 4.097 20 H 0.124 0.876 21 C -0.197 4.197 22 C -0.098 4.098 23 C -0.074 4.074 24 C -0.149 4.149 25 C -0.111 4.111 26 C -0.177 4.177 27 C 0.082 3.918 28 F -0.119 7.119 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.230 0.770 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.149 0.851 46 H 0.147 0.853 47 H 0.148 0.852 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.435 15.422 -15.218 22.602 hybrid contribution 0.637 1.057 0.964 1.567 sum -5.797 16.479 -14.254 22.546 Atomic orbital electron populations 1.22649 0.83664 1.01904 0.98384 1.88274 1.17031 1.26432 1.94816 1.23364 0.97315 0.85209 0.97760 1.21388 0.90389 0.96771 0.90841 1.43886 1.76390 1.04257 1.06633 1.18560 1.37386 0.80025 1.02844 0.90673 1.25332 0.97806 0.94794 0.97539 1.69906 1.44169 1.08493 1.30718 0.87015 0.81302 0.79603 0.81909 1.21443 1.23010 1.19573 1.21012 0.93524 0.94371 0.89864 1.22432 1.00909 0.94207 0.85409 1.46059 1.12767 1.52385 1.26188 1.20282 0.85030 0.81184 0.83638 1.90724 1.22595 1.52439 1.75242 1.20243 0.94460 1.01126 0.93882 0.87565 1.21794 0.96951 1.01282 0.99668 1.19370 0.97684 0.92118 1.00627 1.20876 0.94516 0.97987 0.93990 1.21205 0.96342 0.97675 0.99677 1.20996 0.99443 0.91886 0.98778 1.21057 0.95516 1.00504 1.00650 1.17512 0.93607 0.82486 0.98156 1.91470 1.82684 1.52761 1.84964 0.95591 0.95082 0.90294 0.95447 0.94225 0.91523 0.92822 0.92894 0.91868 0.94130 0.92244 0.91116 0.76992 0.91202 0.91550 0.91306 0.85118 0.85305 0.85171 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 101.05 1.11 1.67 16 2 O -0.35 -7.96 10.31 -35.23 -0.36 -8.32 16 3 C 0.04 0.85 6.27 37.16 0.23 1.09 16 4 C 0.13 2.82 4.90 -4.04 -0.02 2.80 16 5 N -0.59 -13.47 2.04 -173.24 -0.35 -13.82 16 6 C -0.26 -7.14 9.53 -15.06 -0.14 -7.28 16 7 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 8 C 0.05 1.32 5.26 -17.43 -0.09 1.23 16 9 N -0.89 -27.39 13.97 55.49 0.78 -26.61 16 10 Si 0.87 21.90 25.15 -169.99 -4.27 17.63 16 11 H -0.29 -7.10 6.66 56.52 0.38 -6.72 16 12 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.14 2.52 5.83 -4.04 -0.02 2.50 16 15 C 0.10 1.67 5.95 -4.04 -0.02 1.64 16 16 N -0.72 -9.83 5.45 -60.30 -0.33 -10.16 16 17 C 0.51 7.45 7.02 -10.98 -0.08 7.38 16 18 O -0.53 -9.95 15.11 5.56 0.08 -9.86 16 19 C -0.08 -0.83 2.88 -92.92 -0.27 -1.10 16 20 H 0.11 1.06 7.13 -51.93 -0.37 0.69 16 21 C -0.14 -1.17 8.90 37.16 0.33 -0.84 16 22 C -0.10 -1.14 4.40 -104.56 -0.46 -1.60 16 23 C -0.06 -0.63 7.93 -39.60 -0.31 -0.95 16 24 C -0.13 -1.26 10.04 -39.58 -0.40 -1.65 16 25 C -0.09 -0.81 10.04 -39.60 -0.40 -1.21 16 26 C -0.16 -1.53 10.03 -39.52 -0.40 -1.93 16 27 C 0.10 1.17 7.25 -39.42 -0.29 0.89 16 28 F -0.14 -1.66 16.19 2.25 0.04 -1.62 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.76 5.94 -51.93 -0.31 0.45 16 34 H 0.07 1.60 3.50 -51.93 -0.18 1.42 16 35 H 0.05 0.98 7.92 -51.93 -0.41 0.56 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 38 H 0.04 0.64 7.91 -51.93 -0.41 0.23 16 39 H 0.06 1.12 6.00 -51.93 -0.31 0.81 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.40 4.10 7.89 -40.82 -0.32 3.77 16 42 H 0.07 0.50 7.56 -51.92 -0.39 0.11 16 43 H 0.07 0.59 7.39 -51.93 -0.38 0.20 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.13 1.49 7.52 -52.48 -0.39 1.10 16 46 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 47 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 48 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 392.56 15.07 5.92 5.92 Total: -1.00 -34.58 392.56 -7.02 -41.60 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.29 Total: 2.62 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.22 Total: 2.64 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.09 Total: -50.59 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.28 Total: -18.19 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.27 Total: 17.63 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.58 -7.02 -41.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279055837.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.604 kcal (2) G-P(sol) polarization free energy of solvation -34.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds