Wall clock time and date at job start Tue Mar 31 2020 22:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00396 * 2 1 4 4 C 1.52999 * 109.47258 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46975 * 65.70979 * 4 3 2 6 6 C 1.36934 * 119.99799 * 267.90481 * 5 4 3 7 7 H 1.08005 * 119.99870 * 142.25524 * 6 5 4 8 8 C 1.38810 * 120.00165 * 322.25897 * 6 5 4 9 9 N 1.31617 * 120.00161 * 156.38397 * 8 6 5 10 10 Si 1.86799 * 119.99929 * 336.38365 * 8 6 5 11 11 H 1.48493 * 109.47534 * 95.51111 * 10 8 6 12 12 H 1.48507 * 109.46921 * 215.51103 * 10 8 6 13 13 H 1.48502 * 109.47038 * 335.50707 * 10 8 6 14 14 C 1.46495 * 120.00058 * 87.90404 * 5 4 3 15 15 C 1.53007 * 109.47031 * 270.00149 * 14 5 4 16 16 N 1.46495 * 109.47031 * 180.02562 * 15 14 5 17 17 C 1.34778 * 120.00204 * 179.97438 * 16 15 14 18 18 O 1.21276 * 119.99860 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00318 * 179.97438 * 17 16 15 20 20 H 1.09000 * 109.47102 * 300.00492 * 19 17 16 21 21 C 1.53002 * 109.47129 * 60.00383 * 19 17 16 22 22 C 1.50701 * 109.47128 * 180.02562 * 19 17 16 23 23 C 1.38213 * 120.01100 * 299.99739 * 22 19 17 24 24 C 1.38224 * 120.02462 * 179.72423 * 23 22 19 25 25 C 1.38262 * 120.05373 * 0.02562 * 24 23 22 26 26 C 1.38175 * 120.02249 * 0.02562 * 25 24 23 27 27 C 1.38436 * 120.01248 * 119.72735 * 22 19 17 28 28 F 1.35104 * 120.02659 * 0.24892 * 27 22 19 29 29 H 1.09002 * 109.46777 * 300.00204 * 1 2 3 30 30 H 1.09005 * 109.46849 * 59.99316 * 1 2 3 31 31 H 1.08995 * 109.47254 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47238 * 59.99932 * 3 2 1 33 33 H 1.08998 * 109.47430 * 300.00263 * 3 2 1 34 34 H 1.08995 * 109.47599 * 305.70768 * 4 3 2 35 35 H 1.09000 * 109.47529 * 185.70678 * 4 3 2 36 36 H 0.97006 * 120.00291 * 179.97438 * 9 8 6 37 37 H 1.08993 * 109.47312 * 150.00234 * 14 5 4 38 38 H 1.09004 * 109.47501 * 29.99973 * 14 5 4 39 39 H 1.08995 * 109.47329 * 60.00315 * 15 14 5 40 40 H 1.09000 * 109.47276 * 300.00024 * 15 14 5 41 41 H 0.97006 * 120.00156 * 0.02562 * 16 15 14 42 42 H 1.09008 * 109.46736 * 299.99939 * 21 19 17 43 43 H 1.09004 * 109.47091 * 59.99562 * 21 19 17 44 44 H 1.08997 * 109.47205 * 180.02562 * 21 19 17 45 45 H 1.08007 * 119.98739 * 359.70601 * 23 22 19 46 46 H 1.08006 * 119.97307 * 180.02562 * 24 23 22 47 47 H 1.07999 * 119.99223 * 179.97438 * 25 24 23 48 48 H 1.08001 * 120.01576 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9779 0.5793 -1.2581 6 6 4.1403 -0.7776 -1.3454 7 1 3.8662 -1.2970 -2.2518 8 6 4.6572 -1.4855 -0.2691 9 7 4.3985 -2.7695 -0.1406 10 14 5.7200 -0.6156 0.9971 11 1 4.8781 -0.1966 2.1463 12 1 6.7810 -1.5400 1.4718 13 1 6.3460 0.5811 0.3798 14 6 4.2465 1.4257 -2.4232 15 6 2.9658 1.5827 -3.2456 16 7 3.2346 2.4286 -4.4111 17 6 2.2465 2.7061 -5.2846 18 8 1.1347 2.2559 -5.1056 19 6 2.5227 3.5767 -6.4833 20 1 2.8623 4.5573 -6.1496 21 6 3.6071 2.9278 -7.3459 22 6 1.2614 3.7313 -7.2933 23 6 0.6411 2.6170 -7.8261 24 6 -0.5189 2.7579 -8.5644 25 6 -1.0599 4.0133 -8.7712 26 6 -0.4409 5.1288 -8.2404 27 6 0.7205 4.9888 -7.4994 28 9 1.3258 6.0787 -6.9787 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8500 0.5581 0.8353 35 1 3.9785 2.1752 0.1028 36 1 4.7600 -3.2643 0.6114 37 1 5.0186 0.9632 -3.0380 38 1 4.5865 2.4061 -2.0895 39 1 2.1937 2.0452 -2.6309 40 1 2.6258 0.6023 -3.5793 41 1 4.1239 2.7884 -4.5545 42 1 4.5194 2.8164 -6.7597 43 1 3.2676 1.9472 -7.6795 44 1 3.8073 3.5578 -8.2126 45 1 1.0632 1.6358 -7.6658 46 1 -1.0032 1.8865 -8.9800 47 1 -1.9661 4.1223 -9.3485 48 1 -0.8634 6.1095 -8.4024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279055837.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:51 Heat of formation + Delta-G solvation = -97.778723 kcal Electronic energy + Delta-G solvation = -29727.721806 eV Core-core repulsion = 25504.370717 eV Total energy + Delta-G solvation = -4223.351089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.94441 -41.27227 -39.64744 -39.07207 -37.53798 -35.73122 -35.27154 -33.67331 -31.53041 -31.30520 -30.42316 -29.27272 -27.19871 -26.15410 -25.36092 -23.95715 -23.58096 -22.74004 -22.35665 -20.90901 -18.83703 -18.67188 -18.21023 -17.76343 -17.40851 -17.11145 -17.03542 -16.57626 -16.51558 -16.33768 -16.17037 -15.80280 -15.40236 -15.14440 -15.07033 -14.82081 -14.63927 -14.40030 -14.20786 -14.10817 -13.67108 -13.54698 -13.26760 -13.18602 -12.99400 -12.91268 -12.90263 -12.56800 -12.43584 -12.32817 -12.15085 -11.89652 -11.85203 -11.70163 -11.43927 -10.90289 -10.55471 -10.42151 -10.03664 -9.89830 -9.62740 -8.77678 -8.09309 -5.48163 0.16623 0.27872 1.37053 1.45769 1.56916 1.60279 2.12774 2.51244 2.68920 3.09443 3.10496 3.26392 3.40040 3.50690 3.70849 3.90232 4.07116 4.13258 4.16047 4.21326 4.22885 4.35308 4.37885 4.39370 4.43509 4.48752 4.54696 4.61238 4.63240 4.73344 4.76316 4.82085 4.84162 4.95853 4.98426 5.08448 5.13101 5.15321 5.20810 5.24290 5.40299 5.46330 5.49815 5.94918 6.00711 6.25668 6.52352 6.56800 7.04338 7.25533 7.70071 8.08283 9.11003 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016933 B = 0.002626 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.181459 B =10660.119911 C =11126.880391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.043 3.957 4 C 0.123 3.877 5 N -0.602 5.602 6 C -0.241 4.241 7 H 0.028 0.972 8 C -0.015 4.015 9 N -0.949 5.949 10 Si 0.942 3.058 11 H -0.281 1.281 12 H -0.313 1.313 13 H -0.246 1.246 14 C 0.141 3.859 15 C 0.116 3.884 16 N -0.709 5.709 17 C 0.512 3.488 18 O -0.579 6.579 19 C -0.066 4.066 20 H 0.120 0.880 21 C -0.136 4.136 22 C -0.115 4.115 23 C -0.076 4.076 24 C -0.135 4.135 25 C -0.089 4.089 26 C -0.160 4.160 27 C 0.082 3.918 28 F -0.145 7.145 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.096 0.904 36 H 0.258 0.742 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.026 0.974 41 H 0.416 0.584 42 H 0.085 0.915 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.120 0.880 46 H 0.148 0.852 47 H 0.163 0.837 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.606 19.615 -15.991 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.036 4.036 4 C -0.002 4.002 5 N -0.324 5.324 6 C -0.370 4.370 7 H 0.046 0.954 8 C -0.211 4.211 9 N -0.593 5.593 10 Si 0.771 3.229 11 H -0.208 1.208 12 H -0.242 1.242 13 H -0.169 1.169 14 C 0.015 3.985 15 C -0.010 4.010 16 N -0.362 5.362 17 C 0.299 3.701 18 O -0.459 6.459 19 C -0.087 4.087 20 H 0.138 0.862 21 C -0.194 4.194 22 C -0.116 4.116 23 C -0.094 4.094 24 C -0.153 4.153 25 C -0.106 4.106 26 C -0.178 4.178 27 C 0.062 3.938 28 F -0.124 7.124 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.253 0.747 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.104 0.896 45 H 0.138 0.862 46 H 0.166 0.834 47 H 0.181 0.819 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.183 19.031 -15.737 25.457 hybrid contribution 0.406 -0.029 0.990 1.070 sum -5.777 19.002 -14.747 24.737 Atomic orbital electron populations 1.22768 0.81539 1.02468 0.99897 1.88198 1.19647 1.28612 1.95198 1.23390 0.96335 0.84421 0.99438 1.21576 0.91657 0.98058 0.88926 1.43956 1.76873 1.03006 1.08585 1.18329 1.35508 0.82359 1.00854 0.95418 1.25975 0.99415 0.95369 1.00306 1.70061 1.46368 1.10641 1.32193 0.85880 0.78856 0.78799 0.79404 1.20843 1.24209 1.16889 1.21142 0.93504 0.95443 0.88388 1.21907 1.00266 0.92553 0.86294 1.45834 1.13836 1.51539 1.24976 1.20970 0.84228 0.80730 0.84193 1.90701 1.24569 1.54273 1.76339 1.20229 0.95188 1.00880 0.92407 0.86173 1.21820 0.96528 1.00912 1.00092 1.19515 0.98319 0.92516 1.01255 1.20952 0.95686 0.97558 0.95197 1.21523 0.95702 0.99092 0.99008 1.21387 1.00103 0.91003 0.98132 1.21410 0.94748 1.01962 0.99711 1.17746 0.94533 0.82257 0.99215 1.91448 1.82900 1.52858 1.85192 0.92748 0.94673 0.90395 0.92377 0.93661 0.94063 0.88558 0.93268 0.91768 0.89914 0.93333 0.95533 0.74658 0.89622 0.92454 0.89606 0.86238 0.83438 0.81913 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 11.01 113.37 1.25 2.31 16 2 O -0.40 -18.24 10.31 -148.98 -1.54 -19.77 16 3 C 0.04 1.62 6.27 71.98 0.45 2.07 16 4 C 0.12 4.95 4.90 86.38 0.42 5.38 16 5 N -0.60 -26.94 2.04 -702.00 -1.43 -28.38 16 6 C -0.24 -13.58 9.53 84.03 0.80 -12.78 16 7 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 8 C -0.01 -0.85 5.26 84.86 0.45 -0.40 16 9 N -0.95 -60.72 13.97 21.65 0.30 -60.42 16 10 Si 0.94 45.55 25.15 68.60 1.73 47.28 16 11 H -0.28 -13.20 6.66 99.48 0.66 -12.54 16 12 H -0.31 -15.53 7.11 99.48 0.71 -14.83 16 13 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 14 C 0.14 4.85 5.83 86.38 0.50 5.36 16 15 C 0.12 4.04 5.95 86.38 0.51 4.55 16 16 N -0.71 -18.53 5.45 -463.07 -2.52 -21.06 16 17 C 0.51 14.71 7.02 87.66 0.62 15.33 16 18 O -0.58 -22.15 15.11 -3.02 -0.05 -22.20 16 19 C -0.07 -1.37 2.88 -12.28 -0.04 -1.41 16 20 H 0.12 2.17 7.13 -2.39 -0.02 2.15 16 21 C -0.14 -2.09 8.90 71.98 0.64 -1.45 16 22 C -0.11 -2.65 4.40 -19.82 -0.09 -2.74 16 23 C -0.08 -1.73 7.93 22.26 0.18 -1.55 16 24 C -0.14 -2.44 10.04 22.27 0.22 -2.22 16 25 C -0.09 -1.33 10.04 22.26 0.22 -1.11 16 26 C -0.16 -2.76 10.03 22.31 0.22 -2.54 16 27 C 0.08 1.79 7.25 22.37 0.16 1.95 16 28 F -0.15 -3.24 16.19 44.97 0.73 -2.52 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.65 5.94 -2.39 -0.01 1.64 16 34 H 0.04 1.89 3.50 -2.39 -0.01 1.88 16 35 H 0.10 3.04 7.92 -2.39 -0.02 3.02 16 36 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 37 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 38 H 0.08 2.22 7.91 -2.39 -0.02 2.20 16 39 H 0.05 1.80 6.00 -2.39 -0.01 1.79 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.42 7.57 7.89 -92.70 -0.73 6.84 16 42 H 0.08 1.02 7.56 -2.38 -0.02 1.00 16 43 H 0.06 0.99 7.39 -2.39 -0.02 0.97 16 44 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.12 2.88 7.52 -2.91 -0.02 2.86 16 46 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 47 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 48 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -79.83 392.56 3.95 -75.88 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.20 Total: 20.44 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 6.53 Total: 10.74 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -3.65 Total: -109.85 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -1.58 Total: -41.97 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.73 Total: -2.52 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.73 Total: 47.28 kcal Total: -79.83 3.95 -75.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279055837.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.900 kcal (2) G-P(sol) polarization free energy of solvation -79.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds