Wall clock time and date at job start Tue Mar 31 2020 22:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00011 * 2 1 4 4 C 1.53001 * 109.47475 * 124.99612 * 3 2 1 5 5 C 1.52995 * 109.47010 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47376 * 54.99571 * 5 4 3 7 7 C 1.53004 * 109.47065 * 175.00109 * 5 4 3 8 8 N 1.46904 * 109.47002 * 294.99773 * 5 4 3 9 9 C 1.48723 * 111.00181 * 286.96033 * 8 5 4 10 10 C 1.54411 * 104.35102 * 199.06345 * 9 8 5 11 11 H 1.09001 * 112.06274 * 262.80622 * 10 9 8 12 12 C 1.54410 * 109.23780 * 136.70171 * 10 9 8 13 13 N 1.48321 * 104.36578 * 223.22340 * 12 10 9 14 14 C 1.34771 * 128.20549 * 221.92180 * 13 12 10 15 15 O 1.21280 * 120.00275 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99887 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46977 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99783 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00339 * 0.02562 * 18 17 16 20 20 C 1.38795 * 119.99864 * 179.97438 * 18 17 16 21 21 N 1.31637 * 120.00194 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00215 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46715 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47424 * 119.99845 * 22 20 18 25 25 H 1.48497 * 109.47133 * 240.00448 * 22 20 18 26 26 C 1.50080 * 103.65226 * 42.09253 * 13 12 10 27 27 C 1.54415 * 103.52667 * 317.93694 * 26 13 12 28 28 H 1.09008 * 112.56704 * 262.43357 * 27 26 13 29 29 C 1.48739 * 110.99980 * 172.43430 * 8 5 4 30 30 H 1.07997 * 120.00425 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.99487 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.99982 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46757 * 4.99468 * 3 2 1 34 34 H 1.08997 * 109.46879 * 244.99887 * 3 2 1 35 35 H 1.08995 * 109.46942 * 59.99497 * 4 3 2 36 36 H 1.09003 * 109.46966 * 299.99732 * 4 3 2 37 37 H 1.09003 * 109.46934 * 292.45374 * 7 5 4 38 38 H 1.08995 * 109.46920 * 52.45676 * 7 5 4 39 39 H 1.09003 * 109.47134 * 172.45641 * 7 5 4 40 40 H 1.08998 * 110.45797 * 317.78010 * 9 8 5 41 41 H 1.09002 * 110.45849 * 80.21969 * 9 8 5 42 42 H 1.09000 * 110.45695 * 341.94757 * 12 10 9 43 43 H 1.09003 * 110.45795 * 104.50330 * 12 10 9 44 44 H 1.08995 * 109.47481 * 300.00895 * 16 14 13 45 45 H 1.09000 * 109.46947 * 60.00928 * 16 14 13 46 46 H 0.97000 * 120.00165 * 179.97438 * 21 20 18 47 47 H 1.09009 * 110.99903 * 199.42355 * 26 13 12 48 48 H 1.09005 * 110.71778 * 76.31696 * 26 13 12 49 49 H 1.08999 * 110.45547 * 42.21920 * 29 8 5 50 50 H 1.08999 * 110.56164 * 279.70773 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7995 2.6585 1.1819 6 1 3.0909 3.4867 1.1820 7 6 4.6791 2.7396 2.4312 8 7 4.6441 2.7368 -0.0175 9 6 5.8144 1.8259 0.0943 10 6 6.8188 2.3636 -0.9480 11 1 6.7662 1.8148 -1.8883 12 6 8.2346 2.3742 -0.3320 13 7 8.8087 3.6758 -0.7514 14 6 10.0563 3.9336 -1.1913 15 8 10.8653 3.0347 -1.2816 16 6 10.4456 5.3389 -1.5721 17 16 12.1707 5.3596 -2.1196 18 6 12.3533 7.0723 -2.4909 19 1 11.5213 7.7467 -2.3518 20 6 13.5667 7.5549 -2.9611 21 7 14.5813 6.7332 -3.1292 22 14 13.7606 9.3708 -3.3542 23 1 12.4826 10.0757 -3.0800 24 1 14.8354 9.9485 -2.5078 25 1 14.1179 9.5318 -4.7865 26 6 7.6735 4.6398 -0.5662 27 6 6.4514 3.8672 -1.1083 28 1 6.2106 4.1342 -2.1374 29 6 5.2631 4.0831 -0.1465 30 1 -0.5401 0.9352 -0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1316 0.0895 34 1 2.6213 1.4025 -0.9314 35 1 3.7399 0.5067 1.0922 36 1 2.4771 1.2358 2.1130 37 1 4.0472 2.8165 3.3161 38 1 5.2946 1.8428 2.5010 39 1 5.3220 3.6174 2.3665 40 1 6.2415 1.8757 1.0959 41 1 5.5251 0.8027 -0.1451 42 1 8.1776 2.3154 0.7550 43 1 8.8286 1.5505 -0.7281 44 1 9.8037 5.6871 -2.3813 45 1 10.3302 5.9944 -0.7090 46 1 15.4292 7.0704 -3.4582 47 1 7.8357 5.5500 -1.1438 48 1 7.5370 4.8767 0.4890 49 1 5.6165 4.4343 0.8229 50 1 4.5526 4.7919 -0.5718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279340196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:20 Heat of formation + Delta-G solvation = -4.391827 kcal Electronic energy + Delta-G solvation = -26898.111029 eV Core-core repulsion = 23245.022676 eV Total energy + Delta-G solvation = -3653.088353 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.80733 -38.84970 -37.12776 -35.39091 -33.14413 -32.43312 -31.11836 -30.20504 -29.32486 -28.54230 -26.05576 -25.50759 -24.86537 -23.83733 -22.31581 -20.36010 -19.98615 -19.59908 -19.00157 -17.67058 -16.94076 -16.56129 -15.86377 -15.69566 -15.52590 -15.20827 -14.83601 -14.80645 -14.30270 -14.25694 -13.94535 -13.77786 -13.45447 -13.14119 -12.92846 -12.69988 -12.56578 -12.28972 -12.16092 -12.05341 -11.99939 -11.83726 -11.53932 -11.46836 -11.27689 -11.08438 -11.07563 -11.01788 -10.90043 -10.85252 -10.77094 -10.75266 -9.80916 -9.66151 -9.40227 -9.07995 -8.74020 -8.62572 -8.23392 -6.50748 -6.22229 -3.92909 1.95784 2.85555 3.05063 3.21089 3.25035 3.30481 3.56816 3.64578 4.06715 4.19768 4.25234 4.34193 4.51994 4.64569 4.72319 4.77022 4.80382 4.93530 4.98983 5.00813 5.04996 5.06604 5.12585 5.13015 5.20402 5.27123 5.35095 5.39953 5.41651 5.46440 5.51075 5.55024 5.57406 5.59407 5.69043 5.76211 5.80223 5.83508 5.88276 5.93413 5.96200 6.04149 6.12808 6.30052 6.31329 6.45518 6.47682 6.70177 7.59260 7.70345 8.34872 8.55971 9.23121 10.85266 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028267 B = 0.001892 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.303447 B =14793.804473 C =15136.611215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.088 4.088 4 C -0.101 4.101 5 C 0.067 3.933 6 H 0.082 0.918 7 C -0.190 4.190 8 N -0.497 5.497 9 C 0.029 3.971 10 C -0.100 4.100 11 H 0.096 0.904 12 C 0.111 3.889 13 N -0.633 5.633 14 C 0.555 3.445 15 O -0.517 6.517 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.106 3.894 27 C -0.101 4.101 28 H 0.098 0.902 29 C 0.032 3.968 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.268 0.732 47 H 0.085 0.915 48 H 0.072 0.928 49 H 0.054 0.946 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.895 -9.433 9.872 31.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.168 4.168 3 C -0.126 4.126 4 C -0.139 4.139 5 C -0.042 4.042 6 H 0.100 0.900 7 C -0.249 4.249 8 N -0.220 5.220 9 C -0.099 4.099 10 C -0.120 4.120 11 H 0.114 0.886 12 C -0.012 4.012 13 N -0.370 5.370 14 C 0.344 3.656 15 O -0.391 6.391 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.018 4.018 27 C -0.121 4.121 28 H 0.116 0.884 29 C -0.096 4.096 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.104 0.896 48 H 0.091 0.909 49 H 0.072 0.928 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -26.724 -10.895 9.195 30.289 hybrid contribution -0.407 2.400 0.641 2.517 sum -27.132 -8.496 9.836 30.084 Atomic orbital electron populations 1.23827 0.96059 1.01621 1.02483 1.23072 0.96016 0.98895 0.98799 1.20694 0.97626 0.94399 0.99840 1.21515 0.97645 0.96532 0.98219 1.21869 0.95282 0.98849 0.88218 0.89953 1.22504 1.00997 1.02398 0.98952 1.65935 1.16141 1.04479 1.35488 1.23415 0.90588 0.97814 0.98113 1.22940 0.93825 0.95866 0.99360 0.88576 1.22396 0.92712 0.87651 0.98440 1.49568 1.10989 1.09455 1.67024 1.19996 0.79242 0.90839 0.75553 1.90711 1.48736 1.47171 1.52468 1.23497 1.07005 0.94947 1.04202 1.85412 1.01417 1.12344 1.84248 1.22900 1.00805 0.93419 1.51167 0.90881 1.24994 0.94800 0.98921 0.94860 1.70031 1.02406 1.34846 1.42973 0.86115 0.78288 0.82910 0.78171 1.19618 1.20562 1.20539 1.22908 0.84807 0.93352 1.00699 1.22944 0.93849 0.95040 1.00288 0.88394 1.23345 0.95844 0.92056 0.98331 0.88746 0.88840 0.87691 0.92010 0.89563 0.91749 0.91804 0.91981 0.91814 0.92109 0.92285 0.90001 0.91497 0.89804 0.89301 0.89386 0.92226 0.89642 0.90945 0.92829 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.24 14.32 29.01 0.42 -0.83 16 2 C -0.15 -0.96 9.52 -36.03 -0.34 -1.30 16 3 C -0.09 -0.56 5.54 -27.88 -0.15 -0.72 16 4 C -0.10 -0.59 4.70 -26.73 -0.13 -0.71 16 5 C 0.07 0.41 2.34 -67.71 -0.16 0.25 16 6 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 7 C -0.19 -1.11 8.10 37.16 0.30 -0.81 16 8 N -0.50 -3.53 4.82 -221.69 -1.07 -4.60 16 9 C 0.03 0.21 5.07 -2.07 -0.01 0.20 16 10 C -0.10 -0.91 4.13 -87.75 -0.36 -1.27 16 11 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 12 C 0.11 1.30 6.61 -2.30 -0.02 1.28 16 13 N -0.63 -9.14 3.34 -167.50 -0.56 -9.70 16 14 C 0.55 10.87 7.95 -10.98 -0.09 10.78 16 15 O -0.52 -12.19 16.14 5.56 0.09 -12.10 16 16 C -0.15 -3.02 5.17 36.01 0.19 -2.84 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.11 1.10 6.56 -1.30 -0.01 1.09 16 27 C -0.10 -0.88 4.12 -87.76 -0.36 -1.24 16 28 H 0.10 0.88 8.14 -51.92 -0.42 0.45 16 29 C 0.03 0.23 5.84 -2.07 -0.01 0.22 16 30 H 0.09 0.54 7.84 -52.49 -0.41 0.13 16 31 H 0.09 0.50 8.06 -52.48 -0.42 0.07 16 32 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.06 0.39 7.79 -51.93 -0.40 -0.01 16 34 H 0.09 0.65 7.75 -51.93 -0.40 0.24 16 35 H 0.06 0.39 7.15 -51.93 -0.37 0.02 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 39 H 0.06 0.39 6.14 -51.93 -0.32 0.07 16 40 H 0.06 0.43 4.52 -51.93 -0.23 0.19 16 41 H 0.08 0.58 7.61 -51.93 -0.40 0.18 16 42 H 0.07 0.70 7.22 -51.93 -0.37 0.32 16 43 H 0.08 1.10 7.88 -51.93 -0.41 0.69 16 44 H 0.09 1.71 8.02 -51.92 -0.42 1.29 16 45 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.09 0.89 7.41 -51.92 -0.38 0.50 16 48 H 0.07 0.66 7.18 -51.93 -0.37 0.29 16 49 H 0.05 0.37 5.07 -51.93 -0.26 0.11 16 50 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 401.15 15.07 6.05 6.05 Total: -1.00 -33.66 401.15 -10.98 -44.63 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -8.44 Total: -2.40 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -0.54 Total: -8.90 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.90 Total: -39.79 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.66 -10.98 -44.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279340196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.239 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds