Wall clock time and date at job start Tue Mar 31 2020 22:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00011 * 2 1 4 4 C 1.53001 * 109.47475 * 124.99612 * 3 2 1 5 5 C 1.52995 * 109.47010 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47376 * 54.99571 * 5 4 3 7 7 C 1.53004 * 109.47065 * 175.00109 * 5 4 3 8 8 N 1.46904 * 109.47002 * 294.99773 * 5 4 3 9 9 C 1.48723 * 111.00181 * 286.96033 * 8 5 4 10 10 C 1.54411 * 104.35102 * 199.06345 * 9 8 5 11 11 H 1.09001 * 112.06274 * 262.80622 * 10 9 8 12 12 C 1.54410 * 109.23780 * 136.70171 * 10 9 8 13 13 N 1.48321 * 104.36578 * 223.22340 * 12 10 9 14 14 C 1.34771 * 128.20549 * 221.92180 * 13 12 10 15 15 O 1.21280 * 120.00275 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99887 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46977 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99783 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00339 * 0.02562 * 18 17 16 20 20 C 1.38795 * 119.99864 * 179.97438 * 18 17 16 21 21 N 1.31637 * 120.00194 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00215 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46715 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47424 * 119.99845 * 22 20 18 25 25 H 1.48497 * 109.47133 * 240.00448 * 22 20 18 26 26 C 1.50080 * 103.65226 * 42.09253 * 13 12 10 27 27 C 1.54415 * 103.52667 * 317.93694 * 26 13 12 28 28 H 1.09008 * 112.56704 * 262.43357 * 27 26 13 29 29 C 1.48739 * 110.99980 * 172.43430 * 8 5 4 30 30 H 1.07997 * 120.00425 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.99487 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.99982 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46757 * 4.99468 * 3 2 1 34 34 H 1.08997 * 109.46879 * 244.99887 * 3 2 1 35 35 H 1.08995 * 109.46942 * 59.99497 * 4 3 2 36 36 H 1.09003 * 109.46966 * 299.99732 * 4 3 2 37 37 H 1.09003 * 109.46934 * 292.45374 * 7 5 4 38 38 H 1.08995 * 109.46920 * 52.45676 * 7 5 4 39 39 H 1.09003 * 109.47134 * 172.45641 * 7 5 4 40 40 H 1.08998 * 110.45797 * 317.78010 * 9 8 5 41 41 H 1.09002 * 110.45849 * 80.21969 * 9 8 5 42 42 H 1.09000 * 110.45695 * 341.94757 * 12 10 9 43 43 H 1.09003 * 110.45795 * 104.50330 * 12 10 9 44 44 H 1.08995 * 109.47481 * 300.00895 * 16 14 13 45 45 H 1.09000 * 109.46947 * 60.00928 * 16 14 13 46 46 H 0.97000 * 120.00165 * 179.97438 * 21 20 18 47 47 H 1.09009 * 110.99903 * 199.42355 * 26 13 12 48 48 H 1.09005 * 110.71778 * 76.31696 * 26 13 12 49 49 H 1.08999 * 110.45547 * 42.21920 * 29 8 5 50 50 H 1.08999 * 110.56164 * 279.70773 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7995 2.6585 1.1819 6 1 3.0909 3.4867 1.1820 7 6 4.6791 2.7396 2.4312 8 7 4.6441 2.7368 -0.0175 9 6 5.8144 1.8259 0.0943 10 6 6.8188 2.3636 -0.9480 11 1 6.7662 1.8148 -1.8883 12 6 8.2346 2.3742 -0.3320 13 7 8.8087 3.6758 -0.7514 14 6 10.0563 3.9336 -1.1913 15 8 10.8653 3.0347 -1.2816 16 6 10.4456 5.3389 -1.5721 17 16 12.1707 5.3596 -2.1196 18 6 12.3533 7.0723 -2.4909 19 1 11.5213 7.7467 -2.3518 20 6 13.5667 7.5549 -2.9611 21 7 14.5813 6.7332 -3.1292 22 14 13.7606 9.3708 -3.3542 23 1 12.4826 10.0757 -3.0800 24 1 14.8354 9.9485 -2.5078 25 1 14.1179 9.5318 -4.7865 26 6 7.6735 4.6398 -0.5662 27 6 6.4514 3.8672 -1.1083 28 1 6.2106 4.1342 -2.1374 29 6 5.2631 4.0831 -0.1465 30 1 -0.5401 0.9352 -0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1316 0.0895 34 1 2.6213 1.4025 -0.9314 35 1 3.7399 0.5067 1.0922 36 1 2.4771 1.2358 2.1130 37 1 4.0472 2.8165 3.3161 38 1 5.2946 1.8428 2.5010 39 1 5.3220 3.6174 2.3665 40 1 6.2415 1.8757 1.0959 41 1 5.5251 0.8027 -0.1451 42 1 8.1776 2.3154 0.7550 43 1 8.8286 1.5505 -0.7281 44 1 9.8037 5.6871 -2.3813 45 1 10.3302 5.9944 -0.7090 46 1 15.4292 7.0704 -3.4582 47 1 7.8357 5.5500 -1.1438 48 1 7.5370 4.8767 0.4890 49 1 5.6165 4.4343 0.8229 50 1 4.5526 4.7919 -0.5718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279340196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:20 Heat of formation + Delta-G solvation = -25.037411 kcal Electronic energy + Delta-G solvation = -26899.006289 eV Core-core repulsion = 23245.022676 eV Total energy + Delta-G solvation = -3653.983613 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.62936 -40.07466 -38.00799 -36.06281 -34.59833 -33.95373 -32.06500 -31.11597 -30.23003 -29.35554 -27.70876 -26.80934 -25.66301 -24.56933 -22.94440 -21.11499 -20.63768 -20.46723 -20.07630 -19.40177 -18.18317 -17.31405 -16.90399 -16.78946 -16.68368 -16.60128 -16.01602 -15.84050 -15.52013 -15.04747 -14.80225 -14.71577 -14.55681 -14.32822 -13.89981 -13.58486 -13.51712 -13.26119 -13.21698 -13.08206 -12.92135 -12.82521 -12.68457 -12.60300 -12.50273 -12.21040 -11.98608 -11.94975 -11.82752 -11.68398 -11.50690 -11.41037 -11.32387 -11.16912 -10.95060 -10.29563 -10.13930 -9.85551 -9.27290 -8.69588 -8.35838 -6.14830 1.21879 1.41160 1.43683 1.48428 1.54218 1.56225 2.02116 2.25969 2.98438 3.03532 3.16516 3.39319 3.52636 3.75955 3.83364 3.91078 4.06524 4.15932 4.22266 4.26608 4.27747 4.28706 4.31377 4.31476 4.42607 4.54288 4.59141 4.61422 4.68736 4.71583 4.76068 4.79169 4.82409 4.91267 4.96886 5.02878 5.09376 5.11301 5.16670 5.20292 5.31120 5.37439 5.40816 5.41572 5.47073 5.82852 5.92928 5.98135 6.17797 6.18878 6.39057 7.05312 7.08950 8.73772 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028267 B = 0.001892 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.303447 B =14793.804473 C =15136.611215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.083 4.083 4 C -0.097 4.097 5 C 0.070 3.930 6 H 0.086 0.914 7 C -0.188 4.188 8 N -0.502 5.502 9 C 0.036 3.964 10 C -0.094 4.094 11 H 0.090 0.910 12 C 0.109 3.891 13 N -0.627 5.627 14 C 0.552 3.448 15 O -0.570 6.570 16 C -0.119 4.119 17 S -0.152 6.152 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.101 3.899 27 C -0.095 4.095 28 H 0.098 0.902 29 C 0.038 3.962 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.271 0.729 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.062 0.938 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.673 -7.885 10.825 33.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.178 4.178 3 C -0.120 4.120 4 C -0.134 4.134 5 C -0.039 4.039 6 H 0.104 0.896 7 C -0.246 4.246 8 N -0.225 5.225 9 C -0.092 4.092 10 C -0.114 4.114 11 H 0.109 0.891 12 C -0.014 4.014 13 N -0.362 5.362 14 C 0.341 3.659 15 O -0.449 6.449 16 C -0.270 4.270 17 S 0.076 5.924 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.021 4.021 27 C -0.115 4.115 28 H 0.116 0.884 29 C -0.090 4.090 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.107 0.893 48 H 0.113 0.887 49 H 0.080 0.920 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -29.581 -9.347 10.171 32.648 hybrid contribution 0.296 1.826 0.402 1.893 sum -29.285 -7.521 10.573 32.031 Atomic orbital electron populations 1.23968 0.96111 1.02170 1.01981 1.23157 0.96251 0.99083 0.99261 1.20625 0.97561 0.94378 0.99475 1.21472 0.97447 0.96336 0.98183 1.21869 0.95140 0.99042 0.87841 0.89577 1.22474 1.00943 1.02135 0.99033 1.65945 1.15944 1.04353 1.36286 1.23335 0.90206 0.98026 0.97611 1.22853 0.92488 0.96486 0.99553 0.89136 1.22619 0.93571 0.85597 0.99575 1.49525 1.10082 1.11902 1.64695 1.19733 0.80561 0.89704 0.75940 1.90687 1.50845 1.48162 1.55203 1.23287 1.01937 0.96590 1.05160 1.85605 1.08120 1.13561 1.85164 1.23225 1.01508 0.93313 1.51292 0.89862 1.26145 0.94222 1.04438 0.94309 1.70195 1.03132 1.37483 1.43979 0.84888 0.78876 0.76037 0.78031 1.17937 1.19884 1.19887 1.23257 0.83627 0.92857 1.02344 1.22900 0.93733 0.94121 1.00770 0.88408 1.23317 0.95217 0.92261 0.98197 0.88408 0.88190 0.87501 0.91966 0.90732 0.92038 0.91292 0.91322 0.92049 0.92307 0.91738 0.89628 0.89635 0.91867 0.87598 0.87575 0.91957 0.89261 0.88727 0.92027 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.23 14.32 67.78 0.97 -1.26 16 2 C -0.16 -1.83 9.52 25.65 0.24 -1.59 16 3 C -0.08 -0.92 5.54 29.85 0.17 -0.75 16 4 C -0.10 -0.92 4.70 30.59 0.14 -0.78 16 5 C 0.07 0.66 2.34 44.91 0.11 0.77 16 6 H 0.09 0.80 8.11 -2.39 -0.02 0.78 16 7 C -0.19 -1.67 8.10 71.98 0.58 -1.09 16 8 N -0.50 -5.82 4.82 -855.29 -4.13 -9.95 16 9 C 0.04 0.45 5.07 86.43 0.44 0.89 16 10 C -0.09 -1.55 4.13 -8.94 -0.04 -1.59 16 11 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 12 C 0.11 2.43 6.61 86.51 0.57 3.00 16 13 N -0.63 -17.47 3.34 -802.24 -2.68 -20.15 16 14 C 0.55 21.80 7.95 87.66 0.70 22.49 16 15 O -0.57 -27.97 16.14 -3.03 -0.05 -28.02 16 16 C -0.12 -4.90 5.17 71.24 0.37 -4.53 16 17 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 18 C -0.55 -31.40 9.50 67.95 0.65 -30.75 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.78 5.49 84.86 0.47 1.24 16 21 N -0.91 -56.31 13.22 21.65 0.29 -56.03 16 22 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 C 0.10 1.84 6.56 86.16 0.57 2.41 16 27 C -0.10 -1.42 4.12 -8.94 -0.04 -1.46 16 28 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 29 C 0.04 0.42 5.84 86.42 0.50 0.93 16 30 H 0.10 0.97 7.84 -2.91 -0.02 0.95 16 31 H 0.10 0.92 8.06 -2.91 -0.02 0.90 16 32 H 0.11 1.16 8.06 -2.91 -0.02 1.13 16 33 H 0.06 0.67 7.79 -2.39 -0.02 0.66 16 34 H 0.07 1.01 7.75 -2.39 -0.02 0.99 16 35 H 0.06 0.63 7.15 -2.39 -0.02 0.62 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.06 0.59 6.43 -2.39 -0.02 0.57 16 39 H 0.06 0.56 6.14 -2.39 -0.01 0.54 16 40 H 0.06 0.76 4.52 -2.39 -0.01 0.75 16 41 H 0.09 1.04 7.61 -2.39 -0.02 1.03 16 42 H 0.09 1.62 7.22 -2.39 -0.02 1.60 16 43 H 0.06 1.69 7.88 -2.39 -0.02 1.67 16 44 H 0.11 3.97 8.02 -2.40 -0.02 3.95 16 45 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 46 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 47 H 0.09 1.60 7.41 -2.38 -0.02 1.59 16 48 H 0.09 1.39 7.18 -2.38 -0.02 1.37 16 49 H 0.06 0.61 5.07 -2.39 -0.01 0.60 16 50 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -75.41 401.15 1.60 -73.81 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.91 Total: 16.50 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 6.40 Total: -12.07 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -6.52 Total: -86.13 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.05 Total: -28.02 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -75.41 1.60 -73.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279340196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.774 kcal (2) G-P(sol) polarization free energy of solvation -75.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds