Wall clock time and date at job start Tue Mar 31 2020 22:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47098 * 2 1 4 4 C 1.50703 * 109.46852 * 239.99972 * 2 1 3 5 5 O 1.21279 * 120.00268 * 253.81245 * 4 2 1 6 6 N 1.34784 * 119.99666 * 73.81060 * 4 2 1 7 7 C 1.46493 * 120.00144 * 3.74350 * 6 4 2 8 8 C 1.46498 * 119.99553 * 183.74051 * 6 4 2 9 9 C 1.52995 * 109.47450 * 90.00360 * 8 6 4 10 10 O 1.42905 * 109.47058 * 64.99181 * 9 8 6 11 11 C 1.42904 * 113.99722 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.46581 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47373 * 65.00592 * 12 11 10 14 14 C 1.36938 * 120.00205 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00028 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00219 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99822 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00149 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47051 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46970 * 119.99930 * 18 16 14 21 21 H 1.48501 * 109.47206 * 239.99692 * 18 16 14 22 22 C 1.50696 * 109.47165 * 120.00184 * 2 1 3 23 23 C 1.38270 * 119.98806 * 59.72423 * 22 2 1 24 24 C 1.38221 * 120.05480 * 179.72610 * 23 22 2 25 25 C 1.38220 * 120.02005 * 0.54943 * 24 23 22 26 26 C 1.38434 * 119.97997 * 359.72485 * 25 24 23 27 27 F 1.35096 * 120.03011 * 180.02562 * 26 25 24 28 28 C 1.38171 * 119.98782 * 239.99842 * 22 2 1 29 29 H 1.08990 * 109.47090 * 175.86951 * 1 2 3 30 30 H 1.08998 * 109.46582 * 295.87008 * 1 2 3 31 31 H 1.09001 * 109.47033 * 55.86822 * 1 2 3 32 32 H 1.09000 * 109.47630 * 84.67725 * 7 6 4 33 33 H 1.09001 * 109.47308 * 204.68035 * 7 6 4 34 34 H 1.09003 * 109.47524 * 324.67711 * 7 6 4 35 35 H 1.09001 * 109.46686 * 210.00474 * 8 6 4 36 36 H 1.09002 * 109.47445 * 330.00217 * 8 6 4 37 37 H 1.08993 * 109.47533 * 185.00225 * 9 8 6 38 38 H 1.09010 * 109.46865 * 305.00288 * 9 8 6 39 39 H 1.08996 * 109.47325 * 300.00329 * 11 10 9 40 40 H 1.08996 * 109.46797 * 60.00853 * 11 10 9 41 41 H 1.09007 * 109.46747 * 185.00072 * 12 11 10 42 42 H 1.08996 * 109.47518 * 305.00012 * 12 11 10 43 43 H 0.97006 * 119.99920 * 359.97438 * 13 12 11 44 44 H 0.97006 * 119.99831 * 180.02562 * 17 16 14 45 45 H 1.08002 * 119.97398 * 359.97438 * 23 22 2 46 46 H 1.07999 * 119.99037 * 180.27451 * 24 23 22 47 47 H 1.07997 * 120.01156 * 179.70435 * 25 24 23 48 48 H 1.07998 * 120.01504 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.5105 -1.8210 -1.1368 6 7 1.9501 -0.1115 -2.4352 7 6 1.4486 1.2610 -2.5381 8 6 2.3623 -0.8332 -3.6416 9 6 1.1630 -1.5870 -4.2198 10 8 0.1775 -0.6495 -4.6581 11 6 -0.9907 -1.2532 -5.2176 12 6 -1.9712 -0.1615 -5.6507 13 7 -1.3807 0.6216 -6.7389 14 6 -2.0797 1.6613 -7.2917 15 1 -3.0664 1.9038 -6.9257 16 6 -1.5200 2.4037 -8.3224 17 7 -0.3172 2.1085 -8.7681 18 14 -2.4737 3.8216 -9.0770 19 1 -3.7913 3.9459 -8.4034 20 1 -1.7074 5.0817 -8.9031 21 1 -2.6807 3.5640 -10.5248 22 6 2.0324 -0.7104 1.2304 23 6 1.6935 -2.0325 1.4518 24 6 2.1582 -2.6872 2.5770 25 6 2.9529 -2.0172 3.4881 26 6 3.2883 -0.6919 3.2704 27 9 4.0654 -0.0362 4.1599 28 6 2.8268 -0.0387 2.1397 29 1 -0.3633 -1.0249 -0.0740 30 1 -0.3632 0.4484 0.9247 31 1 -0.3633 0.5766 -0.8507 32 1 2.2646 1.9606 -2.3569 33 1 1.0435 1.4260 -3.5365 34 1 0.6644 1.4179 -1.7974 35 1 2.7356 -0.1234 -4.3797 36 1 3.1501 -1.5430 -3.3891 37 1 1.4883 -2.1940 -5.0646 38 1 0.7349 -2.2320 -3.4524 39 1 -0.7104 -1.8536 -6.0831 40 1 -1.4633 -1.8910 -4.4706 41 1 -2.8977 -0.6211 -5.9951 42 1 -2.1828 0.4931 -4.8052 43 1 -0.4943 0.4040 -7.0673 44 1 0.0741 2.6275 -9.4882 45 1 1.0686 -2.5554 0.7429 46 1 1.8965 -3.7212 2.7467 47 1 3.3120 -2.5275 4.3696 48 1 3.0874 0.9954 1.9691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279457019.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:35 Heat of formation + Delta-G solvation = -86.616082 kcal Electronic energy + Delta-G solvation = -29198.701525 eV Core-core repulsion = 24975.834485 eV Total energy + Delta-G solvation = -4222.867040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.12388 -40.67097 -38.98034 -37.72035 -35.62015 -34.62293 -34.23440 -31.54727 -30.99115 -30.24736 -29.27802 -27.63101 -26.62818 -24.94326 -23.54384 -23.32049 -23.01208 -21.54434 -21.14614 -19.22181 -17.51338 -17.47286 -17.16928 -16.52654 -16.45702 -16.28959 -15.98162 -15.80338 -15.71662 -15.20295 -14.71621 -14.46455 -14.10469 -14.01207 -13.82562 -13.40183 -13.32317 -13.11656 -12.95542 -12.79230 -12.68295 -12.47192 -12.26902 -12.17043 -11.90401 -11.78361 -11.64494 -11.61542 -11.33097 -11.13236 -10.92264 -10.82256 -10.50577 -10.00351 -9.85513 -9.71298 -9.27700 -9.20911 -8.88701 -8.88080 -8.68450 -6.89457 -5.74674 -3.02774 0.88485 0.95880 2.49161 2.88513 3.37881 3.43202 3.48813 3.51104 3.91437 3.98871 4.22669 4.33864 4.56357 4.60403 4.73773 4.81759 4.86001 4.97588 5.08084 5.14033 5.15705 5.22079 5.38409 5.44031 5.48139 5.49245 5.55723 5.57065 5.57795 5.64127 5.70859 5.78689 5.82107 5.82598 5.85513 5.93832 6.03984 6.10380 6.24292 6.33390 6.45208 6.59242 6.62902 6.72981 7.29788 7.57105 7.70793 8.05315 8.43934 9.55607 10.14174 10.50049 11.48134 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021585 B = 0.002074 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.859605 B =13495.416487 C =13885.635785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 H 0.104 0.896 4 C 0.519 3.481 5 O -0.539 6.539 6 N -0.601 5.601 7 C 0.068 3.932 8 C 0.118 3.882 9 C 0.046 3.954 10 O -0.370 6.370 11 C 0.059 3.941 12 C 0.155 3.845 13 N -0.727 5.727 14 C -0.237 4.237 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.932 5.932 18 Si 0.906 3.094 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.041 4.041 23 C -0.088 4.088 24 C -0.094 4.094 25 C -0.154 4.154 26 C 0.091 3.909 27 F -0.143 7.143 28 C -0.147 4.147 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.031 0.969 42 H 0.025 0.975 43 H 0.387 0.613 44 H 0.254 0.746 45 H 0.130 0.870 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.742 -7.977 23.305 25.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 H 0.122 0.878 4 C 0.306 3.694 5 O -0.417 6.417 6 N -0.333 5.333 7 C -0.074 4.074 8 C -0.004 4.004 9 C -0.032 4.032 10 O -0.289 6.289 11 C -0.018 4.018 12 C 0.027 3.973 13 N -0.372 5.372 14 C -0.369 4.369 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.581 5.581 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.220 1.220 22 C -0.041 4.041 23 C -0.106 4.106 24 C -0.112 4.112 25 C -0.173 4.173 26 C 0.072 3.928 27 F -0.121 7.121 28 C -0.165 4.165 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.043 0.957 43 H 0.221 0.779 44 H 0.063 0.937 45 H 0.148 0.852 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.914 -8.211 23.353 25.451 hybrid contribution -0.052 0.644 -0.540 0.842 sum 5.862 -7.567 22.813 24.740 Atomic orbital electron populations 1.21883 0.91216 1.03512 1.03542 1.20287 0.98288 1.00252 0.90478 0.87818 1.20374 0.78417 0.86264 0.84311 1.90690 1.45094 1.19901 1.85972 1.47713 1.63989 1.15563 1.06033 1.22102 0.98898 0.80886 1.05534 1.21570 0.95743 0.97172 0.85946 1.22847 0.90283 0.92338 0.97759 1.87999 1.28184 1.32274 1.80454 1.22772 0.86570 0.96396 0.96057 1.20680 0.93171 0.91699 0.91701 1.42294 1.19660 1.36124 1.39096 1.19274 0.98787 1.06258 1.12552 0.91233 1.24734 0.96837 0.99967 0.99547 1.69684 1.15442 1.42395 1.30538 0.86132 0.78904 0.82338 0.78907 1.20606 1.21896 1.21951 1.19190 0.96470 0.94246 0.94213 1.21061 0.99326 0.93723 0.96535 1.21003 0.96632 1.00036 0.93571 1.21141 1.01344 0.93216 1.01612 1.17596 0.94814 0.91240 0.89118 1.91492 1.72580 1.81128 1.66916 1.20987 1.00329 1.01058 0.94174 0.91686 0.91011 0.90424 0.92859 0.88553 0.90861 0.89136 0.88678 0.92626 0.93692 0.93439 0.94059 0.95144 0.95695 0.77941 0.93651 0.85237 0.85007 0.84951 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.68 37.16 0.32 -0.85 16 2 C -0.07 -0.67 2.07 -92.92 -0.19 -0.86 16 3 H 0.10 0.79 7.22 -51.93 -0.37 0.42 16 4 C 0.52 6.29 6.84 -10.98 -0.08 6.21 16 5 O -0.54 -8.00 14.27 5.56 0.08 -7.92 16 6 N -0.60 -7.13 2.84 -181.58 -0.52 -7.65 16 7 C 0.07 0.73 9.63 59.84 0.58 1.30 16 8 C 0.12 1.46 5.82 -4.04 -0.02 1.44 16 9 C 0.05 0.62 6.28 37.16 0.23 0.85 16 10 O -0.37 -6.10 9.21 -35.23 -0.32 -6.42 16 11 C 0.06 0.96 6.07 37.16 0.23 1.19 16 12 C 0.16 3.10 6.64 -4.04 -0.03 3.07 16 13 N -0.73 -18.42 5.55 -59.91 -0.33 -18.76 16 14 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 18 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 C -0.04 -0.41 4.53 -104.64 -0.47 -0.88 16 23 C -0.09 -0.88 7.88 -39.58 -0.31 -1.19 16 24 C -0.09 -0.82 10.04 -39.59 -0.40 -1.21 16 25 C -0.15 -1.37 10.03 -39.52 -0.40 -1.76 16 26 C 0.09 0.92 7.30 -39.42 -0.29 0.63 16 27 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 28 C -0.15 -1.42 9.65 -39.51 -0.38 -1.80 16 29 H 0.06 0.56 7.52 -51.93 -0.39 0.17 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.64 5.80 -51.93 -0.30 0.34 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.10 1.29 7.23 -51.93 -0.38 0.91 16 34 H 0.07 0.66 4.55 -51.93 -0.24 0.42 16 35 H 0.09 1.12 8.07 -51.93 -0.42 0.70 16 36 H 0.10 1.14 7.37 -51.93 -0.38 0.76 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.39 10.42 7.67 -40.82 -0.31 10.11 16 44 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.13 1.30 7.23 -52.49 -0.38 0.92 16 46 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 48 H 0.13 1.07 7.94 -52.49 -0.42 0.65 16 LS Contribution 398.02 15.07 6.00 6.00 Total: -1.00 -33.06 398.02 -8.17 -41.23 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.36 Total: 6.28 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.46 Total: -1.15 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.12 Total: -53.77 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.25 Total: -14.34 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.06 -8.17 -41.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279457019.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.382 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds