Wall clock time and date at job start Tue Mar 31 2020 22:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47098 * 2 1 4 4 C 1.50703 * 109.46852 * 239.99972 * 2 1 3 5 5 O 1.21279 * 120.00268 * 253.81245 * 4 2 1 6 6 N 1.34784 * 119.99666 * 73.81060 * 4 2 1 7 7 C 1.46493 * 120.00144 * 3.74350 * 6 4 2 8 8 C 1.46498 * 119.99553 * 183.74051 * 6 4 2 9 9 C 1.52995 * 109.47450 * 90.00360 * 8 6 4 10 10 O 1.42905 * 109.47058 * 64.99181 * 9 8 6 11 11 C 1.42904 * 113.99722 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.46581 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47373 * 65.00592 * 12 11 10 14 14 C 1.36938 * 120.00205 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00028 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00219 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99822 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00149 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47051 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46970 * 119.99930 * 18 16 14 21 21 H 1.48501 * 109.47206 * 239.99692 * 18 16 14 22 22 C 1.50696 * 109.47165 * 120.00184 * 2 1 3 23 23 C 1.38270 * 119.98806 * 59.72423 * 22 2 1 24 24 C 1.38221 * 120.05480 * 179.72610 * 23 22 2 25 25 C 1.38220 * 120.02005 * 0.54943 * 24 23 22 26 26 C 1.38434 * 119.97997 * 359.72485 * 25 24 23 27 27 F 1.35096 * 120.03011 * 180.02562 * 26 25 24 28 28 C 1.38171 * 119.98782 * 239.99842 * 22 2 1 29 29 H 1.08990 * 109.47090 * 175.86951 * 1 2 3 30 30 H 1.08998 * 109.46582 * 295.87008 * 1 2 3 31 31 H 1.09001 * 109.47033 * 55.86822 * 1 2 3 32 32 H 1.09000 * 109.47630 * 84.67725 * 7 6 4 33 33 H 1.09001 * 109.47308 * 204.68035 * 7 6 4 34 34 H 1.09003 * 109.47524 * 324.67711 * 7 6 4 35 35 H 1.09001 * 109.46686 * 210.00474 * 8 6 4 36 36 H 1.09002 * 109.47445 * 330.00217 * 8 6 4 37 37 H 1.08993 * 109.47533 * 185.00225 * 9 8 6 38 38 H 1.09010 * 109.46865 * 305.00288 * 9 8 6 39 39 H 1.08996 * 109.47325 * 300.00329 * 11 10 9 40 40 H 1.08996 * 109.46797 * 60.00853 * 11 10 9 41 41 H 1.09007 * 109.46747 * 185.00072 * 12 11 10 42 42 H 1.08996 * 109.47518 * 305.00012 * 12 11 10 43 43 H 0.97006 * 119.99920 * 359.97438 * 13 12 11 44 44 H 0.97006 * 119.99831 * 180.02562 * 17 16 14 45 45 H 1.08002 * 119.97398 * 359.97438 * 23 22 2 46 46 H 1.07999 * 119.99037 * 180.27451 * 24 23 22 47 47 H 1.07997 * 120.01156 * 179.70435 * 25 24 23 48 48 H 1.07998 * 120.01504 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.5105 -1.8210 -1.1368 6 7 1.9501 -0.1115 -2.4352 7 6 1.4486 1.2610 -2.5381 8 6 2.3623 -0.8332 -3.6416 9 6 1.1630 -1.5870 -4.2198 10 8 0.1775 -0.6495 -4.6581 11 6 -0.9907 -1.2532 -5.2176 12 6 -1.9712 -0.1615 -5.6507 13 7 -1.3807 0.6216 -6.7389 14 6 -2.0797 1.6613 -7.2917 15 1 -3.0664 1.9038 -6.9257 16 6 -1.5200 2.4037 -8.3224 17 7 -0.3172 2.1085 -8.7681 18 14 -2.4737 3.8216 -9.0770 19 1 -3.7913 3.9459 -8.4034 20 1 -1.7074 5.0817 -8.9031 21 1 -2.6807 3.5640 -10.5248 22 6 2.0324 -0.7104 1.2304 23 6 1.6935 -2.0325 1.4518 24 6 2.1582 -2.6872 2.5770 25 6 2.9529 -2.0172 3.4881 26 6 3.2883 -0.6919 3.2704 27 9 4.0654 -0.0362 4.1599 28 6 2.8268 -0.0387 2.1397 29 1 -0.3633 -1.0249 -0.0740 30 1 -0.3632 0.4484 0.9247 31 1 -0.3633 0.5766 -0.8507 32 1 2.2646 1.9606 -2.3569 33 1 1.0435 1.4260 -3.5365 34 1 0.6644 1.4179 -1.7974 35 1 2.7356 -0.1234 -4.3797 36 1 3.1501 -1.5430 -3.3891 37 1 1.4883 -2.1940 -5.0646 38 1 0.7349 -2.2320 -3.4524 39 1 -0.7104 -1.8536 -6.0831 40 1 -1.4633 -1.8910 -4.4706 41 1 -2.8977 -0.6211 -5.9951 42 1 -2.1828 0.4931 -4.8052 43 1 -0.4943 0.4040 -7.0673 44 1 0.0741 2.6275 -9.4882 45 1 1.0686 -2.5554 0.7429 46 1 1.8965 -3.7212 2.7467 47 1 3.3120 -2.5275 4.3696 48 1 3.0874 0.9954 1.9691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279457019.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:34 Heat of formation + Delta-G solvation = -106.085267 kcal Electronic energy + Delta-G solvation = -29199.545772 eV Core-core repulsion = 24975.834485 eV Total energy + Delta-G solvation = -4223.711288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.89344 -41.53926 -39.79533 -38.94050 -36.78127 -36.13458 -35.20376 -33.38039 -31.73608 -31.31293 -30.15680 -29.20179 -27.55405 -25.76477 -25.45499 -24.25812 -23.71804 -22.77355 -22.35558 -20.10950 -19.22023 -18.39641 -18.25757 -17.53335 -17.41161 -17.16164 -16.93977 -16.76955 -16.57680 -16.54282 -16.11290 -15.58017 -15.39349 -15.08316 -14.74442 -14.61762 -14.58217 -14.20920 -14.09595 -13.98947 -13.55683 -13.36965 -13.21049 -13.09144 -13.05128 -12.87842 -12.78005 -12.73627 -12.56196 -12.37605 -12.34556 -12.06640 -11.88510 -11.82415 -11.66291 -10.95437 -10.79000 -10.47701 -9.93519 -9.65569 -9.61007 -8.95365 -7.90940 -5.19141 0.17592 0.24804 1.49785 1.50269 1.56902 1.60422 1.99526 2.58858 2.65265 2.78885 3.19699 3.43080 3.46080 3.61800 3.86352 3.98082 4.06541 4.09526 4.12907 4.16153 4.21367 4.26048 4.31204 4.34500 4.46367 4.48775 4.48946 4.53970 4.66656 4.69261 4.75825 4.79835 4.86567 4.91346 5.01050 5.05975 5.10028 5.13967 5.16870 5.28715 5.39271 5.48319 5.52366 5.55515 5.93370 6.28279 6.32109 6.43557 7.11918 7.37513 8.13804 8.37733 9.32757 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021585 B = 0.002074 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.859605 B =13495.416487 C =13885.635785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 H 0.123 0.877 4 C 0.516 3.484 5 O -0.570 6.570 6 N -0.602 5.602 7 C 0.071 3.929 8 C 0.119 3.881 9 C 0.049 3.951 10 O -0.389 6.389 11 C 0.067 3.933 12 C 0.152 3.848 13 N -0.740 5.740 14 C -0.241 4.241 15 H 0.076 0.924 16 C -0.077 4.077 17 N -0.969 5.969 18 Si 0.972 3.028 19 H -0.265 1.265 20 H -0.294 1.294 21 H -0.295 1.295 22 C -0.051 4.051 23 C -0.100 4.100 24 C -0.096 4.096 25 C -0.155 4.155 26 C 0.074 3.926 27 F -0.149 7.149 28 C -0.152 4.152 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.026 0.974 43 H 0.375 0.625 44 H 0.250 0.750 45 H 0.124 0.876 46 H 0.155 0.845 47 H 0.152 0.848 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.887 -7.863 24.656 26.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 H 0.141 0.859 4 C 0.305 3.695 5 O -0.450 6.450 6 N -0.334 5.334 7 C -0.071 4.071 8 C -0.004 4.004 9 C -0.029 4.029 10 O -0.308 6.308 11 C -0.010 4.010 12 C 0.025 3.975 13 N -0.383 5.383 14 C -0.373 4.373 15 H 0.094 0.906 16 C -0.269 4.269 17 N -0.620 5.620 18 Si 0.802 3.198 19 H -0.190 1.190 20 H -0.221 1.221 21 H -0.223 1.223 22 C -0.051 4.051 23 C -0.118 4.118 24 C -0.113 4.113 25 C -0.174 4.174 26 C 0.055 3.945 27 F -0.128 7.128 28 C -0.170 4.170 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.207 0.793 44 H 0.058 0.942 45 H 0.142 0.858 46 H 0.172 0.828 47 H 0.169 0.831 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.020 -8.100 24.737 26.509 hybrid contribution 0.212 0.529 -0.893 1.060 sum 5.231 -7.571 23.844 25.558 Atomic orbital electron populations 1.21860 0.90265 1.03218 1.04327 1.20307 0.98927 1.00712 0.88752 0.85928 1.20856 0.77745 0.85965 0.84912 1.90670 1.46539 1.21309 1.86444 1.47798 1.63742 1.15937 1.05906 1.22123 1.00024 0.80591 1.04390 1.21522 0.95409 0.97223 0.86262 1.22915 0.89879 0.92064 0.98010 1.87975 1.28718 1.33535 1.80575 1.22634 0.86280 0.95157 0.96901 1.20858 0.94325 0.92168 0.90112 1.42493 1.19202 1.36298 1.40292 1.19680 0.99016 1.06465 1.12144 0.90579 1.25555 0.97922 1.02866 1.00590 1.69840 1.17122 1.43739 1.31261 0.85083 0.78143 0.78936 0.77651 1.18972 1.22075 1.22265 1.19289 0.96878 0.94459 0.94524 1.21182 0.99650 0.94015 0.96998 1.21276 0.96059 1.01072 0.92931 1.21404 1.00850 0.92885 1.02215 1.17840 0.95352 0.91913 0.89423 1.91473 1.72841 1.81330 1.67147 1.21153 1.00064 1.01810 0.93991 0.92417 0.89400 0.90478 0.91140 0.91384 0.89033 0.89450 0.88388 0.91954 0.93466 0.93744 0.90934 0.94119 0.95581 0.79317 0.94150 0.85765 0.82770 0.83065 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.68 71.98 0.62 -1.40 16 2 C -0.07 -1.12 2.07 -12.28 -0.03 -1.15 16 3 H 0.12 1.60 7.22 -2.39 -0.02 1.58 16 4 C 0.52 12.04 6.84 87.66 0.60 12.64 16 5 O -0.57 -16.67 14.27 -3.03 -0.04 -16.71 16 6 N -0.60 -13.83 2.84 -846.77 -2.40 -16.24 16 7 C 0.07 1.44 9.63 127.77 1.23 2.67 16 8 C 0.12 2.91 5.82 86.38 0.50 3.41 16 9 C 0.05 1.28 6.28 71.98 0.45 1.74 16 10 O -0.39 -12.56 9.21 -148.98 -1.37 -13.93 16 11 C 0.07 2.11 6.07 71.98 0.44 2.54 16 12 C 0.15 5.90 6.64 86.38 0.57 6.47 16 13 N -0.74 -37.44 5.55 -343.46 -1.91 -39.35 16 14 C -0.24 -13.35 9.99 84.03 0.84 -12.52 16 15 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 16 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 17 N -0.97 -59.14 13.06 21.65 0.28 -58.86 16 18 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 21 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 22 C -0.05 -0.95 4.53 -19.87 -0.09 -1.04 16 23 C -0.10 -1.90 7.88 22.27 0.18 -1.72 16 24 C -0.10 -1.51 10.04 22.26 0.22 -1.29 16 25 C -0.15 -2.52 10.03 22.31 0.22 -2.29 16 26 C 0.07 1.41 7.30 22.38 0.16 1.57 16 27 F -0.15 -3.06 17.27 44.97 0.78 -2.28 16 28 C -0.15 -2.74 9.65 22.31 0.22 -2.52 16 29 H 0.06 0.93 7.52 -2.39 -0.02 0.91 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.13 5.80 -2.39 -0.01 1.11 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.81 7.23 -2.39 -0.02 1.79 16 34 H 0.09 1.49 4.55 -2.39 -0.01 1.48 16 35 H 0.09 2.18 8.07 -2.39 -0.02 2.16 16 36 H 0.10 2.34 7.37 -2.39 -0.02 2.33 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.37 20.49 7.67 -92.70 -0.71 19.78 16 44 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 45 H 0.12 2.44 7.23 -2.91 -0.02 2.42 16 46 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 47 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 48 H 0.15 2.12 7.94 -2.91 -0.02 2.09 16 Total: -1.00 -70.33 398.02 4.23 -66.10 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.26 Total: 30.37 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 6.61 Total: 3.15 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -4.03 Total: -114.44 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.42 Total: -30.65 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -70.33 4.23 -66.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279457019.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.986 kcal (2) G-P(sol) polarization free energy of solvation -70.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds