Wall clock time and date at job start Tue Mar 31 2020 20:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47403 * 2 1 4 4 C 1.42889 * 114.00201 * 184.82894 * 3 2 1 5 5 H 1.09005 * 109.47598 * 329.39594 * 4 3 2 6 6 C 1.53000 * 109.47281 * 209.39763 * 4 3 2 7 7 C 1.53001 * 109.47343 * 65.26953 * 6 4 3 8 8 C 1.50703 * 109.47269 * 89.39430 * 4 3 2 9 9 O 1.21273 * 120.00063 * 5.00141 * 8 4 3 10 10 N 1.34779 * 119.99788 * 184.99629 * 8 4 3 11 11 C 1.46501 * 119.99674 * 179.97438 * 10 8 4 12 12 C 1.50698 * 109.47261 * 180.02562 * 11 10 8 13 13 C 1.38223 * 120.01305 * 260.02558 * 12 11 10 14 14 C 1.38223 * 120.02429 * 179.72166 * 13 12 11 15 15 C 1.38271 * 120.04893 * 0.51067 * 14 13 12 16 16 C 1.50707 * 119.98473 * 179.76855 * 15 14 13 17 17 N 1.46498 * 109.46659 * 269.71955 * 16 15 14 18 18 C 1.36939 * 119.99768 * 179.72212 * 17 16 15 19 19 H 1.08003 * 120.00082 * 0.28328 * 18 17 16 20 20 C 1.38812 * 120.00495 * 180.27539 * 18 17 16 21 21 N 1.31614 * 120.00598 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99511 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47270 * 89.99895 * 22 20 18 24 24 H 1.48505 * 109.47188 * 209.99834 * 22 20 18 25 25 H 1.48504 * 109.47326 * 329.99712 * 22 20 18 26 26 C 1.38175 * 120.02823 * 359.49111 * 15 14 13 27 27 C 1.38437 * 120.01216 * 80.00085 * 12 11 10 28 28 F 1.35098 * 120.02546 * 0.02562 * 27 12 11 29 29 H 1.08995 * 109.47050 * 60.00187 * 1 2 3 30 30 H 1.09003 * 109.47362 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47399 * 300.00274 * 1 2 3 32 32 H 1.09005 * 109.46943 * 239.99856 * 2 1 3 33 33 H 1.09001 * 109.46912 * 120.00218 * 2 1 3 34 34 H 1.09003 * 109.47422 * 185.27109 * 6 4 3 35 35 H 1.09004 * 109.47150 * 305.26770 * 6 4 3 36 36 H 1.09005 * 109.46673 * 54.89728 * 7 6 4 37 37 H 1.08996 * 109.47278 * 174.89315 * 7 6 4 38 38 H 1.08997 * 109.47077 * 294.89595 * 7 6 4 39 39 H 0.96997 * 120.00588 * 0.02562 * 10 8 4 40 40 H 1.09004 * 109.47096 * 60.00755 * 11 10 8 41 41 H 1.09001 * 109.47407 * 300.00959 * 11 10 8 42 42 H 1.07996 * 119.98794 * 359.97438 * 13 12 11 43 43 H 1.08002 * 119.97797 * 180.25448 * 14 13 12 44 44 H 1.08999 * 109.46827 * 149.72051 * 16 15 14 45 45 H 1.08996 * 109.46947 * 29.72140 * 16 15 14 46 46 H 0.96998 * 120.00329 * 0.02562 * 17 16 15 47 47 H 0.96990 * 120.00385 * 180.02562 * 21 20 18 48 48 H 1.07999 * 120.01388 * 180.23607 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4265 1.4616 -0.1099 5 1 3.8978 0.5946 0.3532 6 6 3.8920 2.7347 0.5995 7 6 3.6166 2.6127 2.0995 8 6 3.8141 1.5267 -1.5647 9 8 2.9552 1.5713 -2.4197 10 7 5.1154 1.5354 -1.9156 11 6 5.4923 1.5982 -3.3299 12 6 6.9944 1.5945 -3.4502 13 6 7.6743 2.7800 -3.6577 14 6 9.0525 2.7777 -3.7623 15 6 9.7519 1.5885 -3.6701 16 6 11.2543 1.5870 -3.7896 17 7 11.6322 1.4099 -5.1938 18 6 12.9545 1.3823 -5.5487 19 1 13.7188 1.4865 -4.7928 20 6 13.3126 1.2202 -6.8800 21 7 14.5835 1.1931 -7.2211 22 14 11.9907 1.0404 -8.1875 23 1 11.6233 2.3819 -8.7077 24 1 12.5055 0.2021 -9.3000 25 1 10.7924 0.3943 -7.5944 26 6 9.0745 0.4022 -3.4627 27 6 7.6941 0.4040 -3.3524 28 9 7.0306 -0.7553 -3.1497 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.9611 2.8714 0.4364 35 1 3.3510 3.5922 0.1993 36 1 4.0833 1.7049 2.4819 37 1 4.0294 3.4789 2.6164 38 1 2.5408 2.5671 2.2688 39 1 5.8024 1.4994 -1.2318 40 1 5.0943 2.5117 -3.7718 41 1 5.0840 0.7336 -3.8534 42 1 7.1287 3.7089 -3.7340 43 1 9.5833 3.7050 -3.9203 44 1 11.6650 0.7697 -3.1968 45 1 11.6487 2.5350 -3.4239 46 1 10.9457 1.3166 -5.8728 47 1 14.8338 1.0803 -8.1513 48 1 9.6213 -0.5260 -3.3869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279703254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:41 Heat of formation + Delta-G solvation = -101.790691 kcal Electronic energy + Delta-G solvation = -28646.388606 eV Core-core repulsion = 24422.863545 eV Total energy + Delta-G solvation = -4223.525061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.98114 -40.47638 -39.38141 -37.96969 -35.73744 -34.72669 -34.20191 -32.23189 -31.21555 -30.84498 -30.52900 -28.34814 -26.73418 -24.51913 -23.23724 -22.94882 -22.50541 -22.15125 -20.94210 -20.76837 -18.22278 -17.99306 -17.55979 -16.77358 -16.69726 -16.17548 -15.86621 -15.57847 -15.52142 -15.06282 -14.67260 -14.66008 -14.51191 -14.26500 -14.09608 -13.80741 -13.48115 -13.18058 -13.02738 -12.88406 -12.80547 -12.48414 -12.42867 -12.24514 -12.21325 -12.06863 -11.75206 -11.66004 -11.55720 -11.42824 -11.20883 -10.92738 -10.77450 -10.73765 -10.22698 -9.68253 -9.64564 -9.40632 -9.01070 -8.97772 -8.68639 -7.35138 -5.84740 -3.22151 0.94100 1.15265 2.28101 2.75029 3.26901 3.33257 3.36959 3.41366 3.55414 4.12606 4.24804 4.33112 4.40655 4.46477 4.52661 4.62147 4.70620 4.77477 4.85295 4.91772 5.01343 5.01575 5.02943 5.24950 5.29446 5.31728 5.39687 5.43067 5.45161 5.49487 5.57132 5.59612 5.61728 5.77093 5.78005 5.82188 5.91573 5.98324 6.03080 6.19601 6.22736 6.36870 6.65095 6.73323 6.82923 7.16387 7.88712 7.89388 8.33315 9.10948 9.83085 10.01673 11.33039 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023708 B = 0.002032 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.737031 B =13774.000897 C =14214.117256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.354 6.354 4 C 0.077 3.923 5 H 0.086 0.914 6 C -0.116 4.116 7 C -0.149 4.149 8 C 0.488 3.512 9 O -0.525 6.525 10 N -0.723 5.723 11 C 0.167 3.833 12 C -0.157 4.157 13 C -0.075 4.075 14 C -0.116 4.116 15 C -0.043 4.043 16 C 0.189 3.811 17 N -0.750 5.750 18 C -0.250 4.250 19 H 0.092 0.908 20 C 0.009 3.991 21 N -0.930 5.930 22 Si 0.883 3.117 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.277 1.277 26 C -0.141 4.141 27 C 0.110 3.890 28 F -0.139 7.139 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.401 0.599 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.040 0.960 45 H 0.043 0.957 46 H 0.363 0.637 47 H 0.261 0.739 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.628 1.035 18.908 31.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.271 6.271 4 C 0.015 3.985 5 H 0.104 0.896 6 C -0.154 4.154 7 C -0.206 4.206 8 C 0.274 3.726 9 O -0.400 6.400 10 N -0.377 5.377 11 C 0.044 3.956 12 C -0.158 4.158 13 C -0.094 4.094 14 C -0.135 4.135 15 C -0.044 4.044 16 C 0.062 3.938 17 N -0.396 5.396 18 C -0.380 4.380 19 H 0.110 0.890 20 C -0.187 4.187 21 N -0.578 5.578 22 Si 0.713 3.287 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.203 1.203 26 C -0.160 4.160 27 C 0.090 3.910 28 F -0.117 7.117 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.236 0.764 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.196 0.804 47 H 0.071 0.929 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -25.176 1.173 18.314 31.155 hybrid contribution -0.312 -0.726 -0.914 1.208 sum -25.488 0.446 17.401 30.865 Atomic orbital electron populations 1.21709 0.93378 1.02288 1.03236 1.22583 0.96084 0.83449 1.00048 1.87996 1.18692 1.26887 1.93553 1.22074 0.84163 1.00768 0.91507 0.89608 1.21594 1.01387 0.96054 0.96357 1.21722 1.02668 1.01898 0.94336 1.21473 0.82442 0.76488 0.92236 1.90721 1.49317 1.48070 1.51855 1.46147 1.07401 1.75611 1.08517 1.20040 0.89734 1.03434 0.82350 1.19762 0.95152 0.92830 1.08080 1.20944 0.94218 0.96678 0.97520 1.21262 0.93630 0.98722 0.99882 1.20315 0.97753 0.91911 0.94392 1.19700 0.86028 0.99908 0.88121 1.42662 1.05142 1.89817 1.01970 1.19031 0.82198 1.43060 0.93672 0.88994 1.24656 0.95705 1.01570 0.96817 1.69689 1.14386 1.56425 1.17260 0.86580 0.81794 0.77961 0.82409 1.20913 1.21564 1.20286 1.21178 0.91850 1.00137 1.02832 1.17544 0.90214 0.81043 1.02172 1.91490 1.80876 1.46978 1.92367 0.91567 0.91072 0.91890 0.93111 0.93275 0.90033 0.90259 0.92667 0.92078 0.91780 0.76420 0.90056 0.90471 0.84948 0.84697 0.94222 0.93956 0.80391 0.92905 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.45 6.44 37.16 0.24 0.69 16 3 O -0.35 -3.54 9.17 -55.09 -0.51 -4.05 16 4 C 0.08 0.63 2.51 -27.88 -0.07 0.56 16 5 H 0.09 0.53 7.83 -51.93 -0.41 0.13 16 6 C -0.12 -0.74 5.61 -26.73 -0.15 -0.89 16 7 C -0.15 -0.79 9.76 37.16 0.36 -0.43 16 8 C 0.49 5.29 7.10 -10.98 -0.08 5.22 16 9 O -0.52 -7.90 16.51 -14.30 -0.24 -8.14 16 10 N -0.72 -6.63 5.45 -61.47 -0.33 -6.96 16 11 C 0.17 1.76 5.52 -5.19 -0.03 1.74 16 12 C -0.16 -1.74 5.25 -104.56 -0.55 -2.29 16 13 C -0.08 -0.80 9.67 -39.59 -0.38 -1.18 16 14 C -0.12 -1.46 9.70 -39.57 -0.38 -1.84 16 15 C -0.04 -0.63 5.25 -104.63 -0.55 -1.18 16 16 C 0.19 3.38 6.39 -5.19 -0.03 3.35 16 17 N -0.75 -17.16 5.40 -61.08 -0.33 -17.49 16 18 C -0.25 -6.88 10.47 -15.06 -0.16 -7.04 16 19 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 20 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 21 N -0.93 -28.70 13.97 55.49 0.78 -27.93 16 22 Si 0.88 21.86 27.74 -169.99 -4.71 17.15 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 26 C -0.14 -1.96 9.68 -39.51 -0.38 -2.34 16 27 C 0.11 1.41 7.25 -39.42 -0.29 1.12 16 28 F -0.14 -1.83 16.66 2.25 0.04 -1.80 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.47 8.11 -51.93 -0.42 0.05 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.39 7.76 -51.93 -0.40 -0.01 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.06 0.39 7.97 -51.93 -0.41 -0.02 16 39 H 0.40 2.83 8.17 -40.82 -0.33 2.50 16 40 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 41 H 0.08 0.92 7.94 -51.93 -0.41 0.51 16 42 H 0.13 1.09 8.04 -52.49 -0.42 0.67 16 43 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 45 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 46 H 0.36 8.29 5.52 -40.82 -0.23 8.06 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 406.98 15.07 6.13 6.13 Total: -1.00 -33.71 406.98 -9.03 -42.74 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.69 Total: 5.37 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -2.16 Total: -5.02 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.11 Total: -52.38 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.74 Total: -12.19 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.71 -9.03 -42.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279703254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.055 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds