Wall clock time and date at job start Tue Mar 31 2020 20:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47403 * 2 1 4 4 C 1.42889 * 114.00201 * 184.82894 * 3 2 1 5 5 H 1.09005 * 109.47598 * 329.39594 * 4 3 2 6 6 C 1.53000 * 109.47281 * 209.39763 * 4 3 2 7 7 C 1.53001 * 109.47343 * 65.26953 * 6 4 3 8 8 C 1.50703 * 109.47269 * 89.39430 * 4 3 2 9 9 O 1.21273 * 120.00063 * 5.00141 * 8 4 3 10 10 N 1.34779 * 119.99788 * 184.99629 * 8 4 3 11 11 C 1.46501 * 119.99674 * 179.97438 * 10 8 4 12 12 C 1.50698 * 109.47261 * 180.02562 * 11 10 8 13 13 C 1.38223 * 120.01305 * 260.02558 * 12 11 10 14 14 C 1.38223 * 120.02429 * 179.72166 * 13 12 11 15 15 C 1.38271 * 120.04893 * 0.51067 * 14 13 12 16 16 C 1.50707 * 119.98473 * 179.76855 * 15 14 13 17 17 N 1.46498 * 109.46659 * 269.71955 * 16 15 14 18 18 C 1.36939 * 119.99768 * 179.72212 * 17 16 15 19 19 H 1.08003 * 120.00082 * 0.28328 * 18 17 16 20 20 C 1.38812 * 120.00495 * 180.27539 * 18 17 16 21 21 N 1.31614 * 120.00598 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99511 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47270 * 89.99895 * 22 20 18 24 24 H 1.48505 * 109.47188 * 209.99834 * 22 20 18 25 25 H 1.48504 * 109.47326 * 329.99712 * 22 20 18 26 26 C 1.38175 * 120.02823 * 359.49111 * 15 14 13 27 27 C 1.38437 * 120.01216 * 80.00085 * 12 11 10 28 28 F 1.35098 * 120.02546 * 0.02562 * 27 12 11 29 29 H 1.08995 * 109.47050 * 60.00187 * 1 2 3 30 30 H 1.09003 * 109.47362 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47399 * 300.00274 * 1 2 3 32 32 H 1.09005 * 109.46943 * 239.99856 * 2 1 3 33 33 H 1.09001 * 109.46912 * 120.00218 * 2 1 3 34 34 H 1.09003 * 109.47422 * 185.27109 * 6 4 3 35 35 H 1.09004 * 109.47150 * 305.26770 * 6 4 3 36 36 H 1.09005 * 109.46673 * 54.89728 * 7 6 4 37 37 H 1.08996 * 109.47278 * 174.89315 * 7 6 4 38 38 H 1.08997 * 109.47077 * 294.89595 * 7 6 4 39 39 H 0.96997 * 120.00588 * 0.02562 * 10 8 4 40 40 H 1.09004 * 109.47096 * 60.00755 * 11 10 8 41 41 H 1.09001 * 109.47407 * 300.00959 * 11 10 8 42 42 H 1.07996 * 119.98794 * 359.97438 * 13 12 11 43 43 H 1.08002 * 119.97797 * 180.25448 * 14 13 12 44 44 H 1.08999 * 109.46827 * 149.72051 * 16 15 14 45 45 H 1.08996 * 109.46947 * 29.72140 * 16 15 14 46 46 H 0.96998 * 120.00329 * 0.02562 * 17 16 15 47 47 H 0.96990 * 120.00385 * 180.02562 * 21 20 18 48 48 H 1.07999 * 120.01388 * 180.23607 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4265 1.4616 -0.1099 5 1 3.8978 0.5946 0.3532 6 6 3.8920 2.7347 0.5995 7 6 3.6166 2.6127 2.0995 8 6 3.8141 1.5267 -1.5647 9 8 2.9552 1.5713 -2.4197 10 7 5.1154 1.5354 -1.9156 11 6 5.4923 1.5982 -3.3299 12 6 6.9944 1.5945 -3.4502 13 6 7.6743 2.7800 -3.6577 14 6 9.0525 2.7777 -3.7623 15 6 9.7519 1.5885 -3.6701 16 6 11.2543 1.5870 -3.7896 17 7 11.6322 1.4099 -5.1938 18 6 12.9545 1.3823 -5.5487 19 1 13.7188 1.4865 -4.7928 20 6 13.3126 1.2202 -6.8800 21 7 14.5835 1.1931 -7.2211 22 14 11.9907 1.0404 -8.1875 23 1 11.6233 2.3819 -8.7077 24 1 12.5055 0.2021 -9.3000 25 1 10.7924 0.3943 -7.5944 26 6 9.0745 0.4022 -3.4627 27 6 7.6941 0.4040 -3.3524 28 9 7.0306 -0.7553 -3.1497 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.9611 2.8714 0.4364 35 1 3.3510 3.5922 0.1993 36 1 4.0833 1.7049 2.4819 37 1 4.0294 3.4789 2.6164 38 1 2.5408 2.5671 2.2688 39 1 5.8024 1.4994 -1.2318 40 1 5.0943 2.5117 -3.7718 41 1 5.0840 0.7336 -3.8534 42 1 7.1287 3.7089 -3.7340 43 1 9.5833 3.7050 -3.9203 44 1 11.6650 0.7697 -3.1968 45 1 11.6487 2.5350 -3.4239 46 1 10.9457 1.3166 -5.8728 47 1 14.8338 1.0803 -8.1513 48 1 9.6213 -0.5260 -3.3869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279703254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:40 Heat of formation + Delta-G solvation = -122.812849 kcal Electronic energy + Delta-G solvation = -28647.300195 eV Core-core repulsion = 24422.863545 eV Total energy + Delta-G solvation = -4224.436650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.00066 -41.29289 -40.37766 -38.71937 -37.06265 -35.94732 -34.90621 -33.82952 -32.31994 -31.77697 -31.55707 -29.36749 -27.75342 -25.78667 -24.08326 -23.88140 -23.72587 -22.99835 -22.08358 -21.54126 -19.95040 -18.95175 -18.26130 -17.91845 -17.72058 -17.03519 -16.79314 -16.60157 -16.44751 -16.38035 -15.93912 -15.66484 -15.34535 -15.09296 -15.05793 -14.87278 -14.76014 -14.53427 -14.11756 -13.99172 -13.59355 -13.39776 -13.32783 -13.29691 -13.04266 -12.98975 -12.87655 -12.84931 -12.55518 -12.29215 -12.20270 -12.02770 -11.93971 -11.80405 -11.73295 -11.47190 -11.03896 -10.44407 -10.25401 -9.96863 -9.69415 -9.34478 -8.04745 -5.39049 -0.06606 0.17490 1.37410 1.39072 1.46419 1.46720 1.96938 2.45986 2.51683 2.70318 3.12649 3.27216 3.39104 3.62784 3.64745 3.80149 3.85063 3.88895 3.90303 4.08552 4.13881 4.27650 4.28176 4.33468 4.43882 4.47719 4.49990 4.58745 4.71141 4.77667 4.78457 4.83935 4.94954 5.00000 5.01165 5.09532 5.10968 5.16576 5.21192 5.24015 5.28388 5.42392 5.58641 5.73415 5.82755 6.02322 6.18470 6.43923 7.04491 7.10937 7.78983 7.97735 9.16243 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023708 B = 0.002032 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.737031 B =13774.000897 C =14214.117256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.374 6.374 4 C 0.077 3.923 5 H 0.110 0.890 6 C -0.113 4.113 7 C -0.146 4.146 8 C 0.488 3.512 9 O -0.573 6.573 10 N -0.710 5.710 11 C 0.170 3.830 12 C -0.140 4.140 13 C -0.061 4.061 14 C -0.113 4.113 15 C -0.058 4.058 16 C 0.188 3.812 17 N -0.753 5.753 18 C -0.235 4.235 19 H 0.063 0.937 20 C -0.059 4.059 21 N -0.980 5.980 22 Si 0.950 3.050 23 H -0.275 1.275 24 H -0.296 1.296 25 H -0.257 1.257 26 C -0.148 4.148 27 C 0.103 3.897 28 F -0.143 7.143 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.414 0.586 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.165 0.835 43 H 0.146 0.854 44 H 0.038 0.962 45 H 0.049 0.951 46 H 0.365 0.635 47 H 0.258 0.742 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.700 1.646 20.107 33.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 O -0.292 6.292 4 C 0.015 3.985 5 H 0.128 0.872 6 C -0.150 4.150 7 C -0.203 4.203 8 C 0.274 3.726 9 O -0.451 6.451 10 N -0.365 5.365 11 C 0.047 3.953 12 C -0.142 4.142 13 C -0.079 4.079 14 C -0.131 4.131 15 C -0.059 4.059 16 C 0.062 3.938 17 N -0.399 5.399 18 C -0.366 4.366 19 H 0.081 0.919 20 C -0.251 4.251 21 N -0.630 5.630 22 Si 0.778 3.222 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.182 1.182 26 C -0.167 4.167 27 C 0.084 3.916 28 F -0.122 7.122 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.251 0.749 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.182 0.818 43 H 0.164 0.836 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.198 0.802 47 H 0.067 0.933 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -27.263 1.785 19.581 33.614 hybrid contribution 0.325 -0.913 -1.155 1.507 sum -26.938 0.873 18.427 32.649 Atomic orbital electron populations 1.21726 0.92805 1.03308 1.02604 1.22726 0.96721 0.82902 1.00334 1.87982 1.19823 1.27948 1.93451 1.22274 0.83673 1.02687 0.89837 0.87208 1.21628 1.02240 0.94438 0.96723 1.21700 1.02110 1.02919 0.93572 1.22023 0.82213 0.75273 0.93052 1.90701 1.50639 1.50448 1.53339 1.46027 1.07397 1.74674 1.08358 1.19960 0.89122 1.03209 0.83051 1.19827 0.95258 0.92438 1.06657 1.21212 0.93450 0.97605 0.95652 1.21402 0.94438 0.98228 0.99077 1.19974 0.95682 0.93170 0.97024 1.19771 0.88806 0.99913 0.85269 1.42681 1.03291 1.89653 1.04288 1.19040 0.83792 1.40765 0.92991 0.91897 1.25443 0.97834 1.02515 0.99292 1.69861 1.16773 1.58858 1.17546 0.85483 0.79498 0.78111 0.79140 1.20107 1.22312 1.18211 1.21125 0.92441 0.99801 1.03320 1.17578 0.89867 0.81442 1.02741 1.91482 1.80829 1.47389 1.92469 0.93385 0.89267 0.91259 0.94676 0.90959 0.88095 0.91694 0.91545 0.91146 0.92909 0.74899 0.89285 0.91971 0.81756 0.83642 0.94419 0.93278 0.80151 0.93262 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.28 71.98 0.74 -1.20 16 2 C 0.05 0.76 6.44 71.98 0.46 1.22 16 3 O -0.37 -7.13 9.17 -129.99 -1.19 -8.32 16 4 C 0.08 1.12 2.51 29.85 0.07 1.19 16 5 H 0.11 1.05 7.83 -2.38 -0.02 1.04 16 6 C -0.11 -1.17 5.61 30.59 0.17 -1.00 16 7 C -0.15 -1.20 9.76 71.98 0.70 -0.50 16 8 C 0.49 9.88 7.10 87.66 0.62 10.50 16 9 O -0.57 -17.08 16.51 15.98 0.26 -16.82 16 10 N -0.71 -11.37 5.45 -466.78 -2.54 -13.91 16 11 C 0.17 3.19 5.52 85.63 0.47 3.66 16 12 C -0.14 -2.71 5.25 -19.82 -0.10 -2.81 16 13 C -0.06 -1.06 9.67 22.26 0.22 -0.84 16 14 C -0.11 -2.47 9.70 22.27 0.22 -2.25 16 15 C -0.06 -1.58 5.25 -19.87 -0.10 -1.68 16 16 C 0.19 6.53 6.39 85.64 0.55 7.08 16 17 N -0.75 -33.78 5.40 -347.17 -1.87 -35.65 16 18 C -0.24 -13.04 10.47 84.03 0.88 -12.16 16 19 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 20 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 21 N -0.98 -61.86 13.97 21.65 0.30 -61.56 16 22 Si 0.95 45.02 27.74 68.60 1.90 46.92 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 25 H -0.26 -11.20 6.52 99.48 0.65 -10.55 16 26 C -0.15 -3.87 9.68 22.31 0.22 -3.66 16 27 C 0.10 2.43 7.25 22.38 0.16 2.59 16 28 F -0.14 -3.56 16.66 44.97 0.75 -2.82 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.03 0.63 8.11 -2.38 -0.02 0.61 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 0.64 7.76 -2.39 -0.02 0.62 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.05 0.56 7.97 -2.39 -0.02 0.54 16 39 H 0.41 4.55 8.17 -92.71 -0.76 3.80 16 40 H 0.09 1.59 8.01 -2.39 -0.02 1.57 16 41 H 0.06 1.40 7.94 -2.39 -0.02 1.38 16 42 H 0.16 1.87 8.04 -2.91 -0.02 1.85 16 43 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 44 H 0.04 1.33 8.08 -2.39 -0.02 1.31 16 45 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 46 H 0.37 15.98 5.52 -92.71 -0.51 15.47 16 47 H 0.26 15.57 8.31 -92.72 -0.77 14.80 16 48 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -74.43 406.98 2.99 -71.44 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -0.36 Total: 23.53 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 5.74 Total: -2.82 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -4.11 Total: -111.12 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.93 Total: -25.13 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.75 Total: -2.82 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.92 kcal Total: -74.43 2.99 -71.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279703254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.375 kcal (2) G-P(sol) polarization free energy of solvation -74.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds