Wall clock time and date at job start Tue Mar 31 2020 22:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47764 * 2 1 4 4 N 1.46504 * 109.47612 * 239.99476 * 2 1 3 5 5 C 1.34778 * 119.99632 * 84.99754 * 4 2 1 6 6 O 1.21285 * 119.99772 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99843 * 180.02562 * 5 4 2 8 8 S 1.81007 * 109.46981 * 180.02562 * 7 5 4 9 9 C 1.76198 * 99.99939 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99882 * 0.02562 * 9 8 7 11 11 C 1.38803 * 120.00156 * 180.02562 * 9 8 7 12 12 N 1.31622 * 119.99987 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99730 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46755 * 90.00046 * 13 11 9 15 15 H 1.48496 * 109.47073 * 210.00108 * 13 11 9 16 16 H 1.48493 * 109.47235 * 330.00193 * 13 11 9 17 17 C 1.53010 * 109.47158 * 119.99884 * 2 1 3 18 18 C 1.53935 * 113.72848 * 300.00172 * 17 2 1 19 19 N 1.47962 * 86.30001 * 221.86345 * 18 17 2 20 20 C 1.46903 * 111.00056 * 137.63674 * 19 18 17 21 21 C 1.50700 * 109.47048 * 169.99964 * 20 19 18 22 22 C 1.29441 * 117.95692 * 95.00469 * 21 20 19 23 23 C 1.50070 * 124.07250 * 180.44596 * 22 21 20 24 24 C 1.53032 * 110.14690 * 342.86757 * 23 22 21 25 25 C 1.53390 * 108.43610 * 49.43845 * 24 23 22 26 26 C 1.50065 * 117.96211 * 274.73887 * 21 20 19 27 27 C 1.48308 * 90.62534 * 24.68684 * 19 18 17 28 28 H 1.09001 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47529 * 300.00148 * 1 2 3 30 30 H 1.09002 * 109.46903 * 60.00721 * 1 2 3 31 31 H 0.96998 * 120.00343 * 265.00206 * 4 2 1 32 32 H 1.09004 * 109.47290 * 300.00213 * 7 5 4 33 33 H 1.09000 * 109.47187 * 60.00802 * 7 5 4 34 34 H 0.97007 * 120.00491 * 179.97438 * 12 11 9 35 35 H 1.08999 * 112.93383 * 71.56619 * 17 2 1 36 36 H 1.09002 * 113.76229 * 336.23742 * 18 17 2 37 37 H 1.09005 * 113.75703 * 107.49267 * 18 17 2 38 38 H 1.08997 * 109.47397 * 290.00293 * 20 19 18 39 39 H 1.09006 * 109.46564 * 49.99948 * 20 19 18 40 40 H 1.07999 * 117.96831 * 0.41840 * 22 21 20 41 41 H 1.09003 * 109.35984 * 103.07092 * 23 22 21 42 42 H 1.09001 * 109.36309 * 222.66138 * 23 22 21 43 43 H 1.09002 * 109.63912 * 169.12095 * 24 23 22 44 44 H 1.08994 * 109.64124 * 289.75510 * 24 23 22 45 45 H 1.08993 * 109.64657 * 52.24961 * 25 24 23 46 46 H 1.09002 * 109.64209 * 172.88520 * 25 24 23 47 47 H 1.09002 * 109.35750 * 283.09809 * 26 21 20 48 48 H 1.08997 * 109.36066 * 42.68275 * 26 21 20 49 49 H 1.09003 * 113.75437 * 220.98675 * 27 19 18 50 50 H 1.08998 * 113.85723 * 89.64375 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8590 1.1585 -2.4115 7 6 2.6490 -0.7290 -3.5876 8 16 2.7107 0.4343 -4.9730 9 6 3.3125 -0.6314 -6.2407 10 1 3.5204 -1.6682 -6.0210 11 6 3.5192 -0.1384 -7.5217 12 7 3.9683 -0.9346 -8.4687 13 14 3.1588 1.6547 -7.9018 14 1 4.3786 2.4666 -7.6606 15 1 2.7493 1.7867 -9.3230 16 1 2.0622 2.1360 -7.0239 17 6 2.0400 -0.7213 1.2493 18 6 1.5822 -0.0738 2.5687 19 7 2.9593 -0.3146 3.0533 20 6 3.4649 0.8452 3.7999 21 6 4.7577 0.4786 4.4821 22 6 5.8655 0.7615 3.8753 23 6 7.2275 0.4501 4.4232 24 6 7.1390 0.1628 5.9237 25 6 6.0172 -0.8570 6.1570 26 6 4.6806 -0.1861 5.8253 27 6 3.4669 -0.3154 1.6599 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 2.2491 -1.6318 -1.1525 32 1 3.6482 -1.1215 -3.3984 33 1 1.9761 -1.5507 -3.8325 34 1 4.1124 -0.5902 -9.3641 35 1 1.8823 -1.7991 1.2116 36 1 1.3279 0.9820 2.4748 37 1 0.8230 -0.6483 3.0996 38 1 3.6390 1.6724 3.1119 39 1 2.7309 1.1435 4.5485 40 1 5.8061 1.2517 2.9149 41 1 7.6319 -0.4232 3.9114 42 1 7.8874 1.3016 4.2567 43 1 8.0859 -0.2473 6.2747 44 1 6.9139 1.0843 6.4605 45 1 6.1677 -1.7215 5.5105 46 1 6.0191 -1.1713 7.2007 47 1 4.4489 0.5603 6.5851 48 1 3.8937 -0.9401 5.8107 49 1 4.2152 -1.0838 1.4656 50 1 3.7647 0.6690 1.2986 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282687521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:44 Heat of formation + Delta-G solvation = -9.996254 kcal Electronic energy + Delta-G solvation = -26439.054060 eV Core-core repulsion = 22785.722680 eV Total energy + Delta-G solvation = -3653.331379 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.75796 -39.25472 -38.53477 -35.32593 -33.01783 -32.44249 -31.31855 -31.03955 -28.84727 -28.38245 -26.31444 -25.61425 -24.88490 -23.53349 -22.40770 -21.35730 -20.50155 -19.82157 -17.96878 -17.76223 -16.74048 -16.56365 -16.16503 -15.86620 -15.23174 -15.06437 -14.90634 -14.84167 -14.36046 -14.06937 -14.00565 -13.72915 -13.46310 -13.30853 -13.08003 -12.90715 -12.79902 -12.67663 -12.63624 -12.53264 -12.06491 -11.87319 -11.77496 -11.28069 -11.20367 -11.10147 -11.04164 -11.00411 -10.94072 -10.73408 -10.58881 -10.43145 -9.86145 -9.52664 -9.30236 -9.01953 -8.99562 -8.89380 -8.50430 -6.92115 -6.29223 -4.00880 1.93148 2.75687 2.97250 3.28447 3.33151 3.49909 3.61827 3.65336 4.11820 4.32647 4.33559 4.35311 4.39881 4.59302 4.70216 4.73323 4.89014 4.92888 4.94256 5.03963 5.08410 5.09789 5.11954 5.18981 5.23852 5.26596 5.27365 5.30491 5.34531 5.41147 5.52120 5.52436 5.57699 5.59499 5.66190 5.73499 5.76572 5.76877 5.87632 5.91553 5.98623 6.00165 6.01992 6.14998 6.37390 6.58109 6.66455 6.77640 7.62628 7.93821 8.41463 8.49962 9.16940 10.79987 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015930 B = 0.002026 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.232402 B =13816.379248 C =14893.474396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.152 3.848 3 H 0.086 0.914 4 N -0.731 5.731 5 C 0.532 3.468 6 O -0.521 6.521 7 C -0.124 4.124 8 S -0.142 6.142 9 C -0.521 4.521 10 H 0.088 0.912 11 C 0.095 3.905 12 N -0.880 5.880 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C -0.121 4.121 18 C 0.012 3.988 19 N -0.473 5.473 20 C 0.050 3.950 21 C -0.107 4.107 22 C -0.152 4.152 23 C -0.089 4.089 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.078 4.078 27 C 0.010 3.990 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.399 0.601 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.271 0.729 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.089 0.911 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.244 -0.232 31.173 31.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.104 0.896 4 N -0.385 5.385 5 C 0.318 3.682 6 O -0.396 6.396 7 C -0.275 4.275 8 S 0.084 5.916 9 C -0.669 4.669 10 H 0.106 0.894 11 C -0.114 4.114 12 N -0.517 5.517 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.159 1.159 17 C -0.141 4.141 18 C -0.117 4.117 19 N -0.195 5.195 20 C -0.078 4.078 21 C -0.107 4.107 22 C -0.171 4.171 23 C -0.126 4.126 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.114 4.114 27 C -0.118 4.118 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.233 0.767 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.107 0.893 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.538 1.182 31.340 31.367 hybrid contribution 0.297 -0.405 -0.925 1.053 sum -0.241 0.778 30.415 30.426 Atomic orbital electron populations 1.22157 0.95152 1.02236 1.02572 1.20918 0.94190 0.97041 0.83157 0.89640 1.46026 1.69086 1.14002 1.09351 1.20277 0.76843 0.87214 0.83860 1.90692 1.48603 1.15785 1.84480 1.23285 1.04460 1.03458 0.96293 1.84777 1.87240 1.16819 1.02789 1.22319 1.50419 0.98750 0.95385 0.89390 1.24718 0.93383 0.98291 0.94964 1.69936 1.43401 1.35785 1.02548 0.86731 0.81092 0.84866 0.79136 1.19228 1.19947 1.15947 1.23264 0.96034 1.01377 0.93411 1.23923 0.93169 1.00324 0.94290 1.68621 1.03325 1.36154 1.11374 1.21791 0.95735 0.92459 0.97800 1.20607 0.93787 0.99796 0.96513 1.21929 0.94054 1.01562 0.99579 1.20417 0.94986 1.01557 0.95619 1.21610 0.98704 0.99419 0.96090 1.21619 0.94578 0.98321 1.01137 1.20349 0.98027 0.99216 0.93856 1.24119 0.97127 1.01785 0.88776 0.92364 0.91894 0.91694 0.76687 0.88546 0.88488 0.91946 0.87730 0.90956 0.89032 0.93269 0.90515 0.88288 0.90920 0.91256 0.91863 0.91906 0.91642 0.91891 0.91405 0.90630 0.89287 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.29 37.16 0.35 -1.28 16 2 C 0.15 1.60 2.41 -67.92 -0.16 1.44 16 3 H 0.09 1.08 7.37 -51.93 -0.38 0.70 16 4 N -0.73 -8.88 5.08 -53.80 -0.27 -9.15 16 5 C 0.53 9.19 7.81 -10.99 -0.09 9.10 16 6 O -0.52 -10.98 15.52 5.55 0.09 -10.89 16 7 C -0.12 -2.37 6.16 36.00 0.22 -2.15 16 8 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 9 C -0.52 -15.01 10.04 30.94 0.31 -14.69 16 10 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 11 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 12 N -0.88 -26.56 13.97 55.49 0.78 -25.79 16 13 Si 0.86 21.81 27.74 -169.99 -4.72 17.09 16 14 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 16 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 17 C -0.12 -0.98 3.49 -89.68 -0.31 -1.29 16 18 C 0.01 0.09 6.56 -2.77 -0.02 0.07 16 19 N -0.47 -4.01 6.15 -238.67 -1.47 -5.48 16 20 C 0.05 0.41 4.81 -4.97 -0.02 0.38 16 21 C -0.11 -0.88 5.40 -100.94 -0.54 -1.42 16 22 C -0.15 -1.28 9.37 -35.90 -0.34 -1.62 16 23 C -0.09 -0.65 6.12 -28.17 -0.17 -0.82 16 24 C -0.12 -0.78 6.01 -26.51 -0.16 -0.94 16 25 C -0.12 -0.79 6.02 -26.43 -0.16 -0.95 16 26 C -0.08 -0.56 5.80 -28.09 -0.16 -0.72 16 27 C 0.01 0.09 7.52 -2.58 -0.02 0.07 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.51 7.43 -51.93 -0.39 0.13 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.40 3.80 8.60 -40.82 -0.35 3.45 16 32 H 0.10 1.72 8.14 -51.91 -0.42 1.29 16 33 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 34 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.52 7.85 -51.93 -0.41 0.11 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.42 7.04 -51.93 -0.37 0.05 16 39 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 40 H 0.10 0.88 7.74 -52.49 -0.41 0.47 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.41 8.12 -51.93 -0.42 -0.02 16 45 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.07 0.70 7.31 -51.93 -0.38 0.32 16 LS Contribution 410.10 15.07 6.18 6.18 Total: -1.00 -33.11 410.10 -11.80 -44.91 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -9.01 Total: 0.87 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -1.38 Total: -12.14 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: -0.97 Total: -40.42 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.09 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.11 -11.80 -44.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282687521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.912 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds