Wall clock time and date at job start Tue Mar 31 2020 22:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47247 * 2 1 4 4 C 1.50700 * 109.46597 * 119.99639 * 2 1 3 5 5 O 1.21290 * 119.99480 * 120.00038 * 4 2 1 6 6 N 1.34771 * 120.00520 * 300.00271 * 4 2 1 7 7 C 1.46504 * 120.00361 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47055 * 179.97438 * 7 6 4 9 9 O 1.42898 * 109.47235 * 64.99861 * 8 7 6 10 10 C 1.42895 * 114.00069 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47009 * 180.02562 * 10 9 8 12 12 N 1.46495 * 109.47385 * 65.00185 * 11 10 9 13 13 C 1.46506 * 119.99852 * 269.99682 * 12 11 10 14 14 C 1.36929 * 120.00480 * 89.99949 * 12 11 10 15 15 H 1.08005 * 120.00324 * 22.70793 * 14 12 11 16 16 C 1.38821 * 119.99998 * 202.70610 * 14 12 11 17 17 N 1.31612 * 119.99876 * 11.51009 * 16 14 12 18 18 Si 1.86805 * 119.99687 * 191.50257 * 16 14 12 19 19 H 1.48498 * 109.46872 * 60.00831 * 18 16 14 20 20 H 1.48501 * 109.46792 * 179.97438 * 18 16 14 21 21 H 1.48489 * 109.47476 * 300.00184 * 18 16 14 22 22 C 1.50700 * 109.47168 * 239.99971 * 2 1 3 23 23 C 1.38273 * 119.98476 * 300.01958 * 22 2 1 24 24 C 1.38219 * 120.04906 * 180.02562 * 23 22 2 25 25 C 1.38221 * 120.02651 * 359.97438 * 24 23 22 26 26 C 1.38437 * 119.97267 * 359.70263 * 25 24 23 27 27 F 1.35101 * 120.02764 * 180.31874 * 26 25 24 28 28 C 1.38176 * 119.98790 * 120.00663 * 22 2 1 29 29 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47565 * 300.00194 * 1 2 3 31 31 H 1.09009 * 109.46578 * 60.00261 * 1 2 3 32 32 H 0.97002 * 119.99575 * 359.97438 * 6 4 2 33 33 H 1.08994 * 109.46978 * 299.99795 * 7 6 4 34 34 H 1.09001 * 109.46972 * 59.99792 * 7 6 4 35 35 H 1.08997 * 109.46868 * 185.00116 * 8 7 6 36 36 H 1.09005 * 109.46730 * 305.00015 * 8 7 6 37 37 H 1.09004 * 109.46916 * 300.00183 * 10 9 8 38 38 H 1.08991 * 109.47412 * 59.99970 * 10 9 8 39 39 H 1.09005 * 109.47106 * 185.00125 * 11 10 9 40 40 H 1.09003 * 109.47248 * 304.99789 * 11 10 9 41 41 H 1.09000 * 109.46863 * 93.91783 * 13 12 11 42 42 H 1.08994 * 109.47334 * 213.91958 * 13 12 11 43 43 H 1.09003 * 109.46905 * 333.92145 * 13 12 11 44 44 H 0.97005 * 120.00024 * 179.97438 * 17 16 14 45 45 H 1.08000 * 119.97614 * 0.02562 * 23 22 2 46 46 H 1.07997 * 119.98704 * 180.02562 * 24 23 22 47 47 H 1.07996 * 120.01223 * 180.02562 * 25 24 23 48 48 H 1.07993 * 120.01061 * 359.97438 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1953 -0.9402 3.6509 8 6 1.6856 -0.2186 4.9000 9 8 0.2615 -0.3194 4.9607 10 6 -0.3190 0.3247 6.0965 11 6 -1.8388 0.1531 6.0586 12 7 -2.1739 -1.2656 6.2044 13 6 -2.2943 -2.1155 5.0171 14 6 -2.3747 -1.7973 7.4501 15 1 -2.6503 -1.1550 8.2735 16 6 -2.2241 -3.1620 7.6548 17 7 -1.6738 -3.9105 6.7225 18 14 -2.8023 -3.9360 9.2536 19 1 -4.2608 -3.7080 9.4148 20 1 -2.5305 -5.3957 9.2236 21 1 -2.0760 -3.3201 10.3929 22 6 2.0324 -0.7104 -1.2305 23 6 1.6978 -2.0341 -1.4492 24 6 2.1583 -2.6871 -2.5770 25 6 2.9534 -2.0173 -3.4878 26 6 3.2834 -0.6901 -3.2733 27 9 4.0552 -0.0325 -4.1661 28 6 2.8269 -0.0387 -2.1398 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.1492 0.5390 2.5435 33 1 1.8324 -1.9679 3.6510 34 1 3.2853 -0.9398 3.6507 35 1 2.1205 -0.6779 5.7877 36 1 1.9740 0.8317 4.8559 37 1 0.0744 -0.1238 7.0088 38 1 -0.0722 1.3861 6.0778 39 1 -2.2887 0.7184 6.8749 40 1 -2.2225 0.5212 5.1071 41 1 -1.3420 -2.6104 4.8265 42 1 -3.0668 -2.8660 5.1843 43 1 -2.5636 -1.5023 4.1571 44 1 -1.5682 -4.8641 6.8657 45 1 1.0763 -2.5581 -0.7382 46 1 1.8960 -3.7209 -2.7470 47 1 3.3127 -2.5277 -4.3692 48 1 3.0875 0.9953 -1.9690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283426390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:06 Heat of formation + Delta-G solvation = -83.611914 kcal Electronic energy + Delta-G solvation = -29066.898945 eV Core-core repulsion = 24844.162175 eV Total energy + Delta-G solvation = -4222.736770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.07380 -40.41108 -38.77564 -37.62018 -35.44980 -34.47771 -34.28348 -31.48629 -30.92211 -30.02375 -29.05790 -27.76024 -25.71634 -25.04437 -23.09442 -22.96803 -22.86214 -21.69085 -20.36740 -20.09388 -17.71799 -17.19885 -16.86581 -16.42992 -16.28302 -16.15764 -16.05526 -15.75642 -15.22166 -15.08703 -14.66205 -14.33521 -14.03970 -13.83625 -13.78859 -13.36338 -13.32564 -13.18234 -12.92227 -12.54633 -12.43904 -12.17070 -12.14420 -11.94846 -11.60042 -11.52264 -11.38935 -11.11505 -10.91777 -10.85691 -10.76387 -10.53864 -10.08330 -9.94238 -9.83779 -9.77542 -9.17646 -9.04099 -9.00486 -8.81365 -8.48975 -6.67942 -5.66175 -3.12546 0.95626 1.02555 2.62788 3.10005 3.39571 3.45482 3.46093 3.50327 3.97634 4.13581 4.29180 4.48044 4.53497 4.72035 4.82019 4.88584 4.93478 5.04194 5.14772 5.19170 5.27236 5.43973 5.44506 5.54214 5.55659 5.63784 5.65832 5.71835 5.85677 5.88760 5.92862 5.98952 6.08879 6.15194 6.18166 6.21348 6.30768 6.45694 6.53381 6.69658 6.75028 6.93649 7.50485 7.51311 7.76132 7.82089 7.96698 8.22654 8.45565 9.30005 9.93674 10.44026 11.37852 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019845 B = 0.002129 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.607757 B =13151.238065 C =13652.550962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 H 0.105 0.895 4 C 0.516 3.484 5 O -0.535 6.535 6 N -0.717 5.717 7 C 0.125 3.875 8 C 0.050 3.950 9 O -0.366 6.366 10 C 0.042 3.958 11 C 0.153 3.847 12 N -0.596 5.596 13 C 0.175 3.825 14 C -0.258 4.258 15 H 0.066 0.934 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.902 3.098 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.284 1.284 22 C -0.037 4.037 23 C -0.092 4.092 24 C -0.092 4.092 25 C -0.155 4.155 26 C 0.091 3.909 27 F -0.143 7.143 28 C -0.147 4.147 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.403 0.597 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.024 0.976 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.032 0.968 42 H 0.037 0.963 43 H -0.007 1.007 44 H 0.252 0.748 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.092 10.546 -17.153 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 H 0.123 0.877 4 C 0.301 3.699 5 O -0.411 6.411 6 N -0.369 5.369 7 C 0.001 3.999 8 C -0.027 4.027 9 O -0.285 6.285 10 C -0.037 4.037 11 C 0.025 3.975 12 N -0.318 5.318 13 C 0.031 3.969 14 C -0.388 4.388 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.732 3.268 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.211 1.211 22 C -0.037 4.037 23 C -0.110 4.110 24 C -0.110 4.110 25 C -0.173 4.173 26 C 0.072 3.928 27 F -0.122 7.122 28 C -0.166 4.166 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.238 0.762 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.011 0.989 44 H 0.062 0.938 45 H 0.147 0.853 46 H 0.151 0.849 47 H 0.151 0.849 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.525 9.541 -17.389 21.589 hybrid contribution 0.018 0.110 1.130 1.135 sum 8.543 9.651 -16.259 20.748 Atomic orbital electron populations 1.21826 0.91221 1.03748 1.03231 1.20313 0.98287 1.00144 0.90600 0.87681 1.20336 0.80427 0.84721 0.84399 1.90736 1.37772 1.25953 1.86659 1.45880 1.53448 1.32183 1.05349 1.21401 0.98238 0.97799 0.82424 1.22603 0.84609 0.98422 0.97093 1.88006 1.17098 1.77596 1.45818 1.23519 0.98707 0.93062 0.88424 1.20889 0.89854 0.87921 0.98863 1.43869 1.80311 1.04038 1.03619 1.20686 0.99986 0.91649 0.84621 1.19146 1.40606 0.91558 0.87487 0.91658 1.25035 0.99618 0.97410 0.97534 1.70079 1.45914 1.05240 1.33464 0.86382 0.78633 0.78300 0.83445 1.21142 1.21680 1.21083 1.19148 0.96275 0.94172 0.94123 1.21069 0.99384 0.93767 0.96783 1.21007 0.96392 1.00098 0.93470 1.21137 1.01376 0.93164 1.01668 1.17592 0.94966 0.91207 0.89023 1.91487 1.72943 1.81040 1.66732 1.20944 1.00445 1.01015 0.94182 0.91354 0.91036 0.91168 0.76231 0.90071 0.90610 0.92091 0.93858 0.93328 0.95748 0.92408 0.93863 0.94984 0.94448 0.98896 0.93820 0.85251 0.84912 0.84949 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.90 37.16 0.33 -0.86 16 2 C -0.07 -0.68 2.90 -92.92 -0.27 -0.95 16 3 H 0.11 0.74 7.87 -51.93 -0.41 0.33 16 4 C 0.52 6.58 7.02 -10.99 -0.08 6.50 16 5 O -0.53 -8.86 15.11 5.55 0.08 -8.78 16 6 N -0.72 -8.56 5.40 -60.29 -0.33 -8.89 16 7 C 0.12 1.70 6.06 -4.04 -0.02 1.68 16 8 C 0.05 0.70 6.07 37.16 0.23 0.93 16 9 O -0.37 -6.54 9.84 -35.23 -0.35 -6.89 16 10 C 0.04 0.76 6.28 37.16 0.23 0.99 16 11 C 0.15 3.03 6.11 -4.04 -0.02 3.01 16 12 N -0.60 -14.94 2.89 -181.11 -0.52 -15.46 16 13 C 0.18 4.42 8.61 59.85 0.52 4.94 16 14 C -0.26 -7.05 9.67 -15.06 -0.15 -7.19 16 15 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 16 C 0.00 0.07 5.12 -17.43 -0.09 -0.02 16 17 N -0.90 -26.51 10.62 55.49 0.59 -25.92 16 18 Si 0.90 21.84 29.57 -169.99 -5.03 16.81 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 C -0.04 -0.39 4.40 -104.63 -0.46 -0.85 16 23 C -0.09 -1.02 7.93 -39.58 -0.31 -1.33 16 24 C -0.09 -0.89 10.04 -39.59 -0.40 -1.29 16 25 C -0.15 -1.49 10.03 -39.51 -0.40 -1.89 16 26 C 0.09 0.97 7.30 -39.42 -0.29 0.68 16 27 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 28 C -0.15 -1.48 9.65 -39.52 -0.38 -1.86 16 29 H 0.07 0.65 7.39 -51.93 -0.38 0.26 16 30 H 0.07 0.56 7.56 -51.93 -0.39 0.16 16 31 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.40 4.02 7.89 -40.82 -0.32 3.70 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 40 H 0.04 0.79 7.87 -51.93 -0.41 0.38 16 41 H 0.03 0.89 7.43 -51.93 -0.39 0.50 16 42 H 0.04 1.01 7.20 -51.93 -0.37 0.64 16 43 H -0.01 -0.17 7.85 -51.93 -0.41 -0.58 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.13 1.48 7.51 -52.49 -0.39 1.08 16 46 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 47 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 48 H 0.13 1.07 7.94 -52.49 -0.42 0.66 16 LS Contribution 401.93 15.07 6.06 6.06 Total: -1.00 -33.25 401.93 -8.68 -41.93 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.66 Total: 0.18 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -1.56 Total: 2.49 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.26 Total: -50.26 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.26 Total: -15.67 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.25 -8.68 -41.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283426390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.681 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds