Wall clock time and date at job start Tue Mar 31 2020 22:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47247 * 2 1 4 4 C 1.50700 * 109.46597 * 119.99639 * 2 1 3 5 5 O 1.21290 * 119.99480 * 120.00038 * 4 2 1 6 6 N 1.34771 * 120.00520 * 300.00271 * 4 2 1 7 7 C 1.46504 * 120.00361 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47055 * 179.97438 * 7 6 4 9 9 O 1.42898 * 109.47235 * 64.99861 * 8 7 6 10 10 C 1.42895 * 114.00069 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47009 * 180.02562 * 10 9 8 12 12 N 1.46495 * 109.47385 * 65.00185 * 11 10 9 13 13 C 1.46506 * 119.99852 * 269.99682 * 12 11 10 14 14 C 1.36929 * 120.00480 * 89.99949 * 12 11 10 15 15 H 1.08005 * 120.00324 * 22.70793 * 14 12 11 16 16 C 1.38821 * 119.99998 * 202.70610 * 14 12 11 17 17 N 1.31612 * 119.99876 * 11.51009 * 16 14 12 18 18 Si 1.86805 * 119.99687 * 191.50257 * 16 14 12 19 19 H 1.48498 * 109.46872 * 60.00831 * 18 16 14 20 20 H 1.48501 * 109.46792 * 179.97438 * 18 16 14 21 21 H 1.48489 * 109.47476 * 300.00184 * 18 16 14 22 22 C 1.50700 * 109.47168 * 239.99971 * 2 1 3 23 23 C 1.38273 * 119.98476 * 300.01958 * 22 2 1 24 24 C 1.38219 * 120.04906 * 180.02562 * 23 22 2 25 25 C 1.38221 * 120.02651 * 359.97438 * 24 23 22 26 26 C 1.38437 * 119.97267 * 359.70263 * 25 24 23 27 27 F 1.35101 * 120.02764 * 180.31874 * 26 25 24 28 28 C 1.38176 * 119.98790 * 120.00663 * 22 2 1 29 29 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47565 * 300.00194 * 1 2 3 31 31 H 1.09009 * 109.46578 * 60.00261 * 1 2 3 32 32 H 0.97002 * 119.99575 * 359.97438 * 6 4 2 33 33 H 1.08994 * 109.46978 * 299.99795 * 7 6 4 34 34 H 1.09001 * 109.46972 * 59.99792 * 7 6 4 35 35 H 1.08997 * 109.46868 * 185.00116 * 8 7 6 36 36 H 1.09005 * 109.46730 * 305.00015 * 8 7 6 37 37 H 1.09004 * 109.46916 * 300.00183 * 10 9 8 38 38 H 1.08991 * 109.47412 * 59.99970 * 10 9 8 39 39 H 1.09005 * 109.47106 * 185.00125 * 11 10 9 40 40 H 1.09003 * 109.47248 * 304.99789 * 11 10 9 41 41 H 1.09000 * 109.46863 * 93.91783 * 13 12 11 42 42 H 1.08994 * 109.47334 * 213.91958 * 13 12 11 43 43 H 1.09003 * 109.46905 * 333.92145 * 13 12 11 44 44 H 0.97005 * 120.00024 * 179.97438 * 17 16 14 45 45 H 1.08000 * 119.97614 * 0.02562 * 23 22 2 46 46 H 1.07997 * 119.98704 * 180.02562 * 24 23 22 47 47 H 1.07996 * 120.01223 * 180.02562 * 25 24 23 48 48 H 1.07993 * 120.01061 * 359.97438 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1953 -0.9402 3.6509 8 6 1.6856 -0.2186 4.9000 9 8 0.2615 -0.3194 4.9607 10 6 -0.3190 0.3247 6.0965 11 6 -1.8388 0.1531 6.0586 12 7 -2.1739 -1.2656 6.2044 13 6 -2.2943 -2.1155 5.0171 14 6 -2.3747 -1.7973 7.4501 15 1 -2.6503 -1.1550 8.2735 16 6 -2.2241 -3.1620 7.6548 17 7 -1.6738 -3.9105 6.7225 18 14 -2.8023 -3.9360 9.2536 19 1 -4.2608 -3.7080 9.4148 20 1 -2.5305 -5.3957 9.2236 21 1 -2.0760 -3.3201 10.3929 22 6 2.0324 -0.7104 -1.2305 23 6 1.6978 -2.0341 -1.4492 24 6 2.1583 -2.6871 -2.5770 25 6 2.9534 -2.0173 -3.4878 26 6 3.2834 -0.6901 -3.2733 27 9 4.0552 -0.0325 -4.1661 28 6 2.8269 -0.0387 -2.1398 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.1492 0.5390 2.5435 33 1 1.8324 -1.9679 3.6510 34 1 3.2853 -0.9398 3.6507 35 1 2.1205 -0.6779 5.7877 36 1 1.9740 0.8317 4.8559 37 1 0.0744 -0.1238 7.0088 38 1 -0.0722 1.3861 6.0778 39 1 -2.2887 0.7184 6.8749 40 1 -2.2225 0.5212 5.1071 41 1 -1.3420 -2.6104 4.8265 42 1 -3.0668 -2.8660 5.1843 43 1 -2.5636 -1.5023 4.1571 44 1 -1.5682 -4.8641 6.8657 45 1 1.0763 -2.5581 -0.7382 46 1 1.8960 -3.7209 -2.7470 47 1 3.3127 -2.5277 -4.3692 48 1 3.0875 0.9953 -1.9690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283426390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:05 Heat of formation + Delta-G solvation = -104.055633 kcal Electronic energy + Delta-G solvation = -29067.785451 eV Core-core repulsion = 24844.162175 eV Total energy + Delta-G solvation = -4223.623276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.88832 -41.33484 -39.68460 -38.94984 -37.19021 -35.68004 -35.13991 -33.38210 -31.70503 -31.12437 -30.16538 -29.17588 -27.79395 -25.83584 -24.81033 -23.91603 -23.73196 -22.67575 -22.11348 -21.04465 -18.75831 -18.57994 -18.05117 -17.56219 -17.34663 -17.17835 -17.00699 -16.84739 -16.57466 -16.21080 -16.09365 -15.42112 -15.28227 -15.13168 -15.09911 -14.62822 -14.53011 -14.20330 -14.02704 -13.81548 -13.55065 -13.16716 -13.12082 -13.03260 -12.93740 -12.69011 -12.67081 -12.52294 -12.47075 -12.36074 -12.27759 -12.01513 -11.83756 -11.78038 -11.64980 -10.83358 -10.59395 -10.35638 -10.08635 -9.93233 -9.61825 -8.71109 -7.76730 -5.24463 0.17436 0.24871 1.46822 1.49395 1.55653 1.63725 2.17461 2.53642 2.68934 2.88817 3.20745 3.36307 3.51621 3.73288 3.79643 3.92261 4.02949 4.10879 4.16724 4.19595 4.24861 4.26352 4.46075 4.47771 4.56208 4.61557 4.65238 4.71289 4.77919 4.86290 4.91661 4.95381 4.97502 5.03534 5.08947 5.13351 5.23959 5.25668 5.38395 5.40128 5.43486 5.54119 5.67708 5.85796 5.93334 6.37117 6.48494 6.57461 7.20734 7.26226 7.94873 8.39768 9.26007 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019845 B = 0.002129 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.607757 B =13151.238065 C =13652.550962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 H 0.138 0.862 4 C 0.512 3.488 5 O -0.579 6.579 6 N -0.708 5.708 7 C 0.131 3.869 8 C 0.054 3.946 9 O -0.391 6.391 10 C 0.052 3.948 11 C 0.145 3.855 12 N -0.613 5.613 13 C 0.196 3.804 14 C -0.260 4.260 15 H 0.074 0.926 16 C -0.057 4.057 17 N -0.937 5.937 18 Si 0.966 3.034 19 H -0.278 1.278 20 H -0.299 1.299 21 H -0.275 1.275 22 C -0.047 4.047 23 C -0.110 4.110 24 C -0.097 4.097 25 C -0.156 4.156 26 C 0.076 3.924 27 F -0.147 7.147 28 C -0.148 4.148 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.416 0.584 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.019 0.981 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.063 0.937 41 H -0.001 1.001 42 H 0.007 0.993 43 H 0.021 0.979 44 H 0.244 0.756 45 H 0.116 0.884 46 H 0.150 0.850 47 H 0.152 0.848 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.021 13.249 -17.338 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 H 0.155 0.845 4 C 0.299 3.701 5 O -0.459 6.459 6 N -0.360 5.360 7 C 0.007 3.993 8 C -0.023 4.023 9 O -0.311 6.311 10 C -0.027 4.027 11 C 0.019 3.981 12 N -0.336 5.336 13 C 0.051 3.949 14 C -0.391 4.391 15 H 0.092 0.908 16 C -0.252 4.252 17 N -0.584 5.584 18 Si 0.794 3.206 19 H -0.204 1.204 20 H -0.226 1.226 21 H -0.201 1.201 22 C -0.048 4.048 23 C -0.128 4.128 24 C -0.115 4.115 25 C -0.175 4.175 26 C 0.057 3.943 27 F -0.126 7.126 28 C -0.166 4.166 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.253 0.747 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.037 0.963 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.017 0.983 42 H 0.026 0.974 43 H 0.040 0.960 44 H 0.053 0.947 45 H 0.134 0.866 46 H 0.168 0.832 47 H 0.169 0.831 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.437 12.321 -17.561 23.052 hybrid contribution 0.051 -0.665 1.139 1.320 sum 8.487 11.656 -16.422 21.854 Atomic orbital electron populations 1.21826 0.90323 1.02975 1.04572 1.20338 0.98826 1.01036 0.88154 0.84453 1.20978 0.79541 0.84181 0.85358 1.90716 1.39875 1.27977 1.87295 1.45796 1.53260 1.32239 1.04691 1.21218 0.98804 0.95900 0.83374 1.22693 0.82570 1.00514 0.96529 1.87962 1.19258 1.78290 1.45564 1.23251 0.96866 0.95359 0.87247 1.21149 0.91533 0.84928 1.00516 1.44097 1.80866 1.05981 1.02694 1.20316 0.97212 0.91462 0.85956 1.19536 1.39152 0.91846 0.88517 0.90826 1.25807 1.00547 0.98174 1.00671 1.70275 1.47844 1.04835 1.35411 0.85364 0.78362 0.76749 0.80086 1.20422 1.22596 1.20051 1.19304 0.96608 0.94135 0.94737 1.21164 0.99952 0.94476 0.97209 1.21237 0.96169 1.00999 0.93055 1.21380 1.00858 0.93046 1.02170 1.17820 0.95373 0.91726 0.89375 1.91475 1.73105 1.81146 1.66890 1.21154 0.99785 1.02003 0.93700 0.93221 0.90181 0.89275 0.74743 0.94100 0.89398 0.93062 0.90017 0.96287 0.91103 0.91038 0.91838 0.98297 0.97447 0.96017 0.94726 0.86552 0.83182 0.83056 0.82818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.90 71.98 0.64 -1.45 16 2 C -0.06 -1.07 2.90 -12.28 -0.04 -1.11 16 3 H 0.14 1.47 7.87 -2.39 -0.02 1.45 16 4 C 0.51 12.79 7.02 87.66 0.62 13.40 16 5 O -0.58 -19.64 15.11 -3.06 -0.05 -19.68 16 6 N -0.71 -16.07 5.40 -463.05 -2.50 -18.57 16 7 C 0.13 3.56 6.06 86.38 0.52 4.09 16 8 C 0.05 1.42 6.07 71.98 0.44 1.86 16 9 O -0.39 -13.43 9.84 -148.98 -1.47 -14.90 16 10 C 0.05 1.72 6.28 71.98 0.45 2.17 16 11 C 0.14 5.41 6.11 86.38 0.53 5.94 16 12 N -0.61 -30.44 2.89 -726.92 -2.10 -32.54 16 13 C 0.20 10.01 8.61 127.77 1.10 11.11 16 14 C -0.26 -14.13 9.67 84.04 0.81 -13.32 16 15 H 0.07 3.80 7.85 -2.91 -0.02 3.78 16 16 C -0.06 -3.23 5.12 84.87 0.43 -2.80 16 17 N -0.94 -56.77 10.62 21.65 0.23 -56.54 16 18 Si 0.97 45.35 29.57 68.60 2.03 47.38 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.05 -0.96 4.40 -19.87 -0.09 -1.05 16 23 C -0.11 -2.46 7.93 22.27 0.18 -2.28 16 24 C -0.10 -1.85 10.04 22.26 0.22 -1.63 16 25 C -0.16 -2.87 10.03 22.31 0.22 -2.64 16 26 C 0.08 1.53 7.30 22.37 0.16 1.70 16 27 F -0.15 -3.08 17.27 44.97 0.78 -2.31 16 28 C -0.15 -2.75 9.65 22.31 0.22 -2.54 16 29 H 0.05 0.93 7.39 -2.39 -0.02 0.91 16 30 H 0.08 1.06 7.56 -2.39 -0.02 1.04 16 31 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.42 7.25 7.89 -92.71 -0.73 6.52 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 2.46 8.03 -2.38 -0.02 2.44 16 40 H 0.06 2.12 7.87 -2.39 -0.02 2.10 16 41 H 0.00 -0.08 7.43 -2.39 -0.02 -0.09 16 42 H 0.01 0.38 7.20 -2.39 -0.02 0.36 16 43 H 0.02 0.95 7.85 -2.39 -0.02 0.93 16 44 H 0.24 14.52 8.31 -92.70 -0.77 13.75 16 45 H 0.12 2.83 7.51 -2.91 -0.02 2.81 16 46 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 47 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 48 H 0.15 2.09 7.94 -2.91 -0.02 2.07 16 Total: -1.00 -74.15 401.93 3.57 -70.58 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.22 Total: 15.10 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 6.42 Total: 11.47 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -4.37 Total: -107.65 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -1.51 Total: -34.58 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -74.15 3.57 -70.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283426390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.473 kcal (2) G-P(sol) polarization free energy of solvation -74.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds