Wall clock time and date at job start Tue Mar 31 2020 22:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47028 * 2 1 4 4 C 1.50695 * 109.47279 * 239.99481 * 2 1 3 5 5 O 1.21279 * 120.00371 * 240.00175 * 4 2 1 6 6 N 1.34780 * 119.99507 * 59.99994 * 4 2 1 7 7 C 1.46502 * 119.99465 * 180.02562 * 6 4 2 8 8 C 1.53008 * 109.47007 * 180.02562 * 7 6 4 9 9 O 1.42902 * 109.46790 * 64.99932 * 8 7 6 10 10 C 1.42901 * 113.99751 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47122 * 180.02562 * 10 9 8 12 12 N 1.46494 * 109.47427 * 64.99994 * 11 10 9 13 13 C 1.46496 * 120.00172 * 270.00415 * 12 11 10 14 14 C 1.36946 * 120.00106 * 89.99703 * 12 11 10 15 15 H 1.07997 * 119.99654 * 22.71583 * 14 12 11 16 16 C 1.38809 * 119.99941 * 202.71053 * 14 12 11 17 17 N 1.31616 * 120.00156 * 11.50611 * 16 14 12 18 18 Si 1.86806 * 119.99821 * 191.50772 * 16 14 12 19 19 H 1.48499 * 109.47213 * 90.00187 * 18 16 14 20 20 H 1.48500 * 109.46656 * 210.00000 * 18 16 14 21 21 H 1.48499 * 109.46809 * 329.99958 * 18 16 14 22 22 C 1.50699 * 109.47056 * 119.99515 * 2 1 3 23 23 C 1.38270 * 119.98876 * 240.00050 * 22 2 1 24 24 C 1.38219 * 120.04956 * 179.97438 * 23 22 2 25 25 C 1.38223 * 120.02978 * 0.02562 * 24 23 22 26 26 C 1.38432 * 119.96969 * 359.97438 * 25 24 23 27 27 F 1.35105 * 120.02370 * 180.02562 * 26 25 24 28 28 C 1.38175 * 119.98729 * 59.72501 * 22 2 1 29 29 H 1.09003 * 109.46979 * 60.00286 * 1 2 3 30 30 H 1.08995 * 109.47380 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47252 * 300.00634 * 1 2 3 32 32 H 0.96994 * 120.00507 * 0.02562 * 6 4 2 33 33 H 1.09003 * 109.47177 * 300.00254 * 7 6 4 34 34 H 1.08995 * 109.47144 * 60.00408 * 7 6 4 35 35 H 1.09002 * 109.47293 * 185.00095 * 8 7 6 36 36 H 1.08998 * 109.46883 * 305.00391 * 8 7 6 37 37 H 1.09007 * 109.47002 * 300.00139 * 10 9 8 38 38 H 1.09001 * 109.47221 * 59.99544 * 10 9 8 39 39 H 1.09003 * 109.46914 * 185.00030 * 11 10 9 40 40 H 1.09000 * 109.47036 * 304.99657 * 11 10 9 41 41 H 1.08999 * 109.47627 * 93.91230 * 13 12 11 42 42 H 1.09006 * 109.47311 * 213.91765 * 13 12 11 43 43 H 1.09001 * 109.47311 * 333.91294 * 13 12 11 44 44 H 0.97005 * 120.00206 * 179.97438 * 17 16 14 45 45 H 1.08003 * 119.97242 * 0.02562 * 23 22 2 46 46 H 1.08003 * 119.98558 * 180.02562 * 24 23 22 47 47 H 1.07999 * 120.00998 * 180.02562 * 25 24 23 48 48 H 1.08001 * 120.00940 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7296 -1.6966 -1.1190 6 7 1.7067 -0.2500 -2.4545 7 6 2.1947 -0.9411 -3.6506 8 6 1.6853 -0.2195 -4.9000 9 8 2.2561 1.0892 -4.9601 10 6 1.8425 1.8521 -6.0954 11 6 2.5119 3.2273 -6.0572 12 7 3.9610 3.0693 -6.2035 13 6 4.8027 2.8981 -5.0168 14 6 4.5288 3.0814 -7.4496 15 1 4.0150 3.5562 -8.2724 16 6 5.7646 2.4836 -7.6551 17 7 6.2866 1.7145 -6.7234 18 14 6.6867 2.7709 -9.2541 19 1 7.5638 3.9608 -9.1128 20 1 7.5156 1.5794 -9.5683 21 1 5.7138 3.0006 -10.3522 22 6 2.0323 -0.7103 1.2305 23 6 2.8272 -0.0380 2.1405 24 6 3.2882 -0.6881 3.2698 25 6 2.9554 -2.0114 3.4905 26 6 2.1597 -2.6855 2.5801 27 9 1.8333 -3.9788 2.7950 28 6 1.6937 -2.0315 1.4519 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.1494 0.5388 -2.5436 33 1 3.2847 -0.9416 -3.6507 34 1 1.8309 -1.9686 -3.6504 35 1 1.9732 -0.7827 -5.7877 36 1 0.5990 -0.1404 -4.8563 37 1 2.1334 1.3320 -7.0082 38 1 0.7595 1.9740 -6.0763 39 1 2.1291 3.8405 -6.8730 40 1 2.2935 3.7113 -5.1054 41 1 4.9511 1.8351 -4.8267 42 1 5.7682 3.3756 -5.1841 43 1 4.3151 3.3564 -4.1563 44 1 7.1501 1.2964 -6.8671 45 1 3.0874 0.9961 1.9691 46 1 3.9087 -0.1619 3.9801 47 1 3.3155 -2.5190 4.3732 48 1 1.0695 -2.5552 0.7430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283426391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:10 Heat of formation + Delta-G solvation = -83.562547 kcal Electronic energy + Delta-G solvation = -29036.442293 eV Core-core repulsion = 24813.707664 eV Total energy + Delta-G solvation = -4222.734629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.01752 -40.41149 -38.78496 -37.61827 -35.44656 -34.48606 -34.31664 -31.48148 -30.76521 -30.14068 -29.12191 -27.76461 -25.71114 -25.11365 -23.17291 -22.98441 -22.69842 -21.69762 -20.36750 -20.10412 -17.66967 -17.33851 -16.86991 -16.41950 -16.26950 -16.11244 -16.05507 -15.69637 -15.21355 -15.09007 -14.66210 -14.15375 -14.13393 -13.95220 -13.65420 -13.54167 -13.35880 -13.16869 -12.93479 -12.53400 -12.46891 -12.20919 -12.15308 -12.03097 -11.56247 -11.55518 -11.37973 -11.16930 -10.91446 -10.85300 -10.77829 -10.51258 -10.07541 -9.91489 -9.83005 -9.76326 -9.13961 -9.03947 -9.00173 -8.84777 -8.48674 -6.67516 -5.65448 -3.12176 0.93925 1.04103 2.64115 3.10079 3.39846 3.45784 3.47466 3.49014 3.99326 4.14165 4.28401 4.46702 4.53905 4.71223 4.78007 4.82059 4.96717 5.01340 5.14984 5.17427 5.27441 5.33832 5.45054 5.46321 5.55933 5.62379 5.65972 5.71839 5.76632 5.84380 5.92612 5.99431 6.07828 6.09927 6.18783 6.21801 6.26794 6.46282 6.53798 6.69368 6.75470 6.94456 7.51288 7.52001 7.76751 7.83047 7.97759 8.23564 8.46130 9.30542 9.94196 10.44464 11.38494 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.002155 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.671087 B =12989.512412 C =13432.900403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 H 0.111 0.889 4 C 0.515 3.485 5 O -0.534 6.534 6 N -0.717 5.717 7 C 0.124 3.876 8 C 0.051 3.949 9 O -0.367 6.367 10 C 0.042 3.958 11 C 0.153 3.847 12 N -0.596 5.596 13 C 0.175 3.825 14 C -0.258 4.258 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.902 5.902 18 Si 0.902 3.098 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.281 1.281 22 C -0.036 4.036 23 C -0.121 4.121 24 C -0.093 4.093 25 C -0.156 4.156 26 C 0.095 3.905 27 F -0.142 7.142 28 C -0.119 4.119 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.403 0.597 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.025 0.975 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.032 0.968 42 H 0.037 0.963 43 H -0.007 1.007 44 H 0.251 0.749 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.351 -3.838 18.020 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.095 4.095 3 H 0.129 0.871 4 C 0.301 3.699 5 O -0.411 6.411 6 N -0.369 5.369 7 C 0.001 3.999 8 C -0.027 4.027 9 O -0.285 6.285 10 C -0.037 4.037 11 C 0.025 3.975 12 N -0.319 5.319 13 C 0.030 3.970 14 C -0.388 4.388 15 H 0.084 0.916 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.733 3.267 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.206 1.206 22 C -0.037 4.037 23 C -0.139 4.139 24 C -0.111 4.111 25 C -0.175 4.175 26 C 0.075 3.925 27 F -0.121 7.121 28 C -0.137 4.137 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.238 0.762 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.011 0.989 44 H 0.061 0.939 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.151 0.849 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.538 -4.619 18.222 23.166 hybrid contribution 0.167 -0.058 -1.264 1.276 sum -13.371 -4.677 16.958 22.096 Atomic orbital electron populations 1.21810 0.91753 1.03109 1.03205 1.20337 0.97877 1.00683 0.90629 0.87062 1.20338 0.80431 0.84758 0.84414 1.90741 1.37355 1.26327 1.86639 1.45878 1.53570 1.32068 1.05345 1.21404 1.01138 0.94917 0.82437 1.22603 0.96262 0.86747 0.97089 1.88012 1.70178 1.24500 1.45860 1.23522 0.95491 0.96260 0.88434 1.20889 0.85953 0.91831 0.98863 1.43884 0.99678 1.84669 1.03642 1.20689 0.92562 0.99107 0.84627 1.19199 1.02284 1.29785 0.87486 0.91574 1.25041 0.99517 0.97519 0.97552 1.70094 1.18366 1.32732 1.33457 0.86297 0.79912 0.77170 0.83366 1.21551 1.21813 1.20621 1.19143 0.96743 0.93207 0.94593 1.21122 0.97822 1.00577 0.94385 1.20944 0.99007 0.93663 0.97497 1.21132 1.00372 0.95832 1.00123 1.17655 0.99483 0.78967 0.96345 1.91493 1.91168 1.34600 1.94821 1.20875 1.01751 0.94881 0.96240 0.91335 0.91836 0.91025 0.76240 0.90096 0.90591 0.92089 0.93846 0.93321 0.95740 0.92391 0.93865 0.94976 0.94423 0.98896 0.93866 0.85167 0.84934 0.84940 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.90 37.16 0.33 -0.64 16 2 C -0.07 -0.69 2.90 -92.93 -0.27 -0.96 16 3 H 0.11 0.87 7.88 -51.93 -0.41 0.47 16 4 C 0.52 6.71 7.03 -10.99 -0.08 6.64 16 5 O -0.53 -9.14 15.13 5.56 0.08 -9.05 16 6 N -0.72 -8.71 5.40 -60.29 -0.33 -9.03 16 7 C 0.12 1.73 6.06 -4.04 -0.02 1.70 16 8 C 0.05 0.71 6.07 37.16 0.23 0.94 16 9 O -0.37 -6.64 9.84 -35.23 -0.35 -6.99 16 10 C 0.04 0.76 6.28 37.16 0.23 1.00 16 11 C 0.15 3.06 6.11 -4.05 -0.02 3.03 16 12 N -0.60 -15.08 2.89 -181.13 -0.52 -15.60 16 13 C 0.17 4.47 8.61 59.84 0.52 4.98 16 14 C -0.26 -7.08 9.67 -15.06 -0.15 -7.23 16 15 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 16 C 0.00 0.07 5.12 -17.43 -0.09 -0.02 16 17 N -0.90 -26.72 10.62 55.49 0.59 -26.13 16 18 Si 0.90 21.98 29.57 -169.99 -5.03 16.95 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.04 -0.38 4.39 -104.63 -0.46 -0.84 16 23 C -0.12 -1.12 9.67 -39.58 -0.38 -1.51 16 24 C -0.09 -0.80 10.04 -39.59 -0.40 -1.20 16 25 C -0.16 -1.50 10.03 -39.52 -0.40 -1.90 16 26 C 0.09 1.10 7.30 -39.42 -0.29 0.81 16 27 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 28 C -0.12 -1.38 7.92 -39.52 -0.31 -1.69 16 29 H 0.07 0.39 7.57 -51.93 -0.39 -0.01 16 30 H 0.06 0.46 7.37 -51.93 -0.38 0.08 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.40 4.06 7.89 -40.82 -0.32 3.74 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 40 H 0.04 0.80 7.87 -51.93 -0.41 0.39 16 41 H 0.03 0.90 7.43 -51.93 -0.39 0.51 16 42 H 0.04 1.03 7.20 -51.93 -0.37 0.66 16 43 H -0.01 -0.17 7.85 -51.93 -0.41 -0.58 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.13 0.94 7.94 -52.48 -0.42 0.53 16 46 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 47 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.13 1.52 7.51 -52.49 -0.39 1.13 16 LS Contribution 401.94 15.07 6.06 6.06 Total: -1.00 -34.06 401.94 -8.68 -42.73 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.66 Total: -0.33 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -1.56 Total: 3.11 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.26 Total: -50.76 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.26 Total: -16.04 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.06 -8.68 -42.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283426391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.830 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds