Wall clock time and date at job start Tue Mar 31 2020 22:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47028 * 2 1 4 4 C 1.50695 * 109.47279 * 239.99481 * 2 1 3 5 5 O 1.21279 * 120.00371 * 240.00175 * 4 2 1 6 6 N 1.34780 * 119.99507 * 59.99994 * 4 2 1 7 7 C 1.46502 * 119.99465 * 180.02562 * 6 4 2 8 8 C 1.53008 * 109.47007 * 180.02562 * 7 6 4 9 9 O 1.42902 * 109.46790 * 64.99932 * 8 7 6 10 10 C 1.42901 * 113.99751 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47122 * 180.02562 * 10 9 8 12 12 N 1.46494 * 109.47427 * 64.99994 * 11 10 9 13 13 C 1.46496 * 120.00172 * 270.00415 * 12 11 10 14 14 C 1.36946 * 120.00106 * 89.99703 * 12 11 10 15 15 H 1.07997 * 119.99654 * 22.71583 * 14 12 11 16 16 C 1.38809 * 119.99941 * 202.71053 * 14 12 11 17 17 N 1.31616 * 120.00156 * 11.50611 * 16 14 12 18 18 Si 1.86806 * 119.99821 * 191.50772 * 16 14 12 19 19 H 1.48499 * 109.47213 * 90.00187 * 18 16 14 20 20 H 1.48500 * 109.46656 * 210.00000 * 18 16 14 21 21 H 1.48499 * 109.46809 * 329.99958 * 18 16 14 22 22 C 1.50699 * 109.47056 * 119.99515 * 2 1 3 23 23 C 1.38270 * 119.98876 * 240.00050 * 22 2 1 24 24 C 1.38219 * 120.04956 * 179.97438 * 23 22 2 25 25 C 1.38223 * 120.02978 * 0.02562 * 24 23 22 26 26 C 1.38432 * 119.96969 * 359.97438 * 25 24 23 27 27 F 1.35105 * 120.02370 * 180.02562 * 26 25 24 28 28 C 1.38175 * 119.98729 * 59.72501 * 22 2 1 29 29 H 1.09003 * 109.46979 * 60.00286 * 1 2 3 30 30 H 1.08995 * 109.47380 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47252 * 300.00634 * 1 2 3 32 32 H 0.96994 * 120.00507 * 0.02562 * 6 4 2 33 33 H 1.09003 * 109.47177 * 300.00254 * 7 6 4 34 34 H 1.08995 * 109.47144 * 60.00408 * 7 6 4 35 35 H 1.09002 * 109.47293 * 185.00095 * 8 7 6 36 36 H 1.08998 * 109.46883 * 305.00391 * 8 7 6 37 37 H 1.09007 * 109.47002 * 300.00139 * 10 9 8 38 38 H 1.09001 * 109.47221 * 59.99544 * 10 9 8 39 39 H 1.09003 * 109.46914 * 185.00030 * 11 10 9 40 40 H 1.09000 * 109.47036 * 304.99657 * 11 10 9 41 41 H 1.08999 * 109.47627 * 93.91230 * 13 12 11 42 42 H 1.09006 * 109.47311 * 213.91765 * 13 12 11 43 43 H 1.09001 * 109.47311 * 333.91294 * 13 12 11 44 44 H 0.97005 * 120.00206 * 179.97438 * 17 16 14 45 45 H 1.08003 * 119.97242 * 0.02562 * 23 22 2 46 46 H 1.08003 * 119.98558 * 180.02562 * 24 23 22 47 47 H 1.07999 * 120.00998 * 180.02562 * 25 24 23 48 48 H 1.08001 * 120.00940 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7296 -1.6966 -1.1190 6 7 1.7067 -0.2500 -2.4545 7 6 2.1947 -0.9411 -3.6506 8 6 1.6853 -0.2195 -4.9000 9 8 2.2561 1.0892 -4.9601 10 6 1.8425 1.8521 -6.0954 11 6 2.5119 3.2273 -6.0572 12 7 3.9610 3.0693 -6.2035 13 6 4.8027 2.8981 -5.0168 14 6 4.5288 3.0814 -7.4496 15 1 4.0150 3.5562 -8.2724 16 6 5.7646 2.4836 -7.6551 17 7 6.2866 1.7145 -6.7234 18 14 6.6867 2.7709 -9.2541 19 1 7.5638 3.9608 -9.1128 20 1 7.5156 1.5794 -9.5683 21 1 5.7138 3.0006 -10.3522 22 6 2.0323 -0.7103 1.2305 23 6 2.8272 -0.0380 2.1405 24 6 3.2882 -0.6881 3.2698 25 6 2.9554 -2.0114 3.4905 26 6 2.1597 -2.6855 2.5801 27 9 1.8333 -3.9788 2.7950 28 6 1.6937 -2.0315 1.4519 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.1494 0.5388 -2.5436 33 1 3.2847 -0.9416 -3.6507 34 1 1.8309 -1.9686 -3.6504 35 1 1.9732 -0.7827 -5.7877 36 1 0.5990 -0.1404 -4.8563 37 1 2.1334 1.3320 -7.0082 38 1 0.7595 1.9740 -6.0763 39 1 2.1291 3.8405 -6.8730 40 1 2.2935 3.7113 -5.1054 41 1 4.9511 1.8351 -4.8267 42 1 5.7682 3.3756 -5.1841 43 1 4.3151 3.3564 -4.1563 44 1 7.1501 1.2964 -6.8671 45 1 3.0874 0.9961 1.9691 46 1 3.9087 -0.1619 3.9801 47 1 3.3155 -2.5190 4.3732 48 1 1.0695 -2.5552 0.7430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283426391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:09 Heat of formation + Delta-G solvation = -105.021136 kcal Electronic energy + Delta-G solvation = -29037.372807 eV Core-core repulsion = 24813.707664 eV Total energy + Delta-G solvation = -4223.665143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.90920 -41.33796 -39.68561 -38.96089 -37.19980 -35.69898 -35.15202 -33.38843 -31.54865 -31.18387 -30.23614 -29.19586 -27.80257 -25.84829 -24.81855 -24.03267 -23.55781 -22.68002 -22.12043 -21.06528 -18.76426 -18.51213 -18.24716 -17.59588 -17.32793 -17.13786 -16.97879 -16.86148 -16.59664 -16.20517 -16.13370 -15.45987 -15.23320 -15.15433 -14.84016 -14.75336 -14.56262 -14.32134 -14.05240 -13.84972 -13.49869 -13.17093 -13.11445 -13.00843 -12.90819 -12.77066 -12.71202 -12.51707 -12.47488 -12.31836 -12.22108 -12.00272 -11.88725 -11.78116 -11.65243 -10.83567 -10.61011 -10.36400 -10.10261 -9.89344 -9.63724 -8.71954 -7.77215 -5.25310 0.17300 0.27695 1.46602 1.47940 1.56337 1.63515 2.16973 2.53071 2.69482 2.88185 3.21559 3.35861 3.54214 3.73297 3.79017 3.89830 4.02216 4.08068 4.14361 4.19099 4.29768 4.33411 4.46504 4.47900 4.55035 4.60986 4.64576 4.70726 4.77647 4.87461 4.90702 4.96090 4.97716 5.03077 5.10920 5.17425 5.23511 5.24988 5.36633 5.39390 5.42431 5.52421 5.67422 5.85077 5.95082 6.36594 6.47750 6.56595 7.20094 7.25600 7.94177 8.39005 9.25596 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.002155 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.671087 B =12989.512412 C =13432.900403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.066 4.066 3 H 0.133 0.867 4 C 0.511 3.489 5 O -0.582 6.582 6 N -0.707 5.707 7 C 0.131 3.869 8 C 0.055 3.945 9 O -0.392 6.392 10 C 0.051 3.949 11 C 0.145 3.855 12 N -0.614 5.614 13 C 0.195 3.805 14 C -0.259 4.259 15 H 0.075 0.925 16 C -0.058 4.058 17 N -0.937 5.937 18 Si 0.966 3.034 19 H -0.288 1.288 20 H -0.300 1.300 21 H -0.265 1.265 22 C -0.050 4.050 23 C -0.124 4.124 24 C -0.091 4.091 25 C -0.158 4.158 26 C 0.067 3.933 27 F -0.154 7.154 28 C -0.135 4.135 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.416 0.584 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.019 0.981 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.064 0.936 41 H -0.002 1.002 42 H 0.007 0.993 43 H 0.022 0.978 44 H 0.243 0.757 45 H 0.155 0.845 46 H 0.165 0.835 47 H 0.151 0.849 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.226 -1.764 18.424 24.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 H 0.151 0.849 4 C 0.298 3.702 5 O -0.462 6.462 6 N -0.359 5.359 7 C 0.006 3.994 8 C -0.022 4.022 9 O -0.312 6.312 10 C -0.027 4.027 11 C 0.019 3.981 12 N -0.337 5.337 13 C 0.050 3.950 14 C -0.389 4.389 15 H 0.093 0.907 16 C -0.253 4.253 17 N -0.584 5.584 18 Si 0.795 3.205 19 H -0.215 1.215 20 H -0.227 1.227 21 H -0.190 1.190 22 C -0.051 4.051 23 C -0.142 4.142 24 C -0.108 4.108 25 C -0.177 4.177 26 C 0.048 3.952 27 F -0.133 7.133 28 C -0.154 4.154 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.253 0.747 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.037 0.963 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.016 0.984 42 H 0.026 0.974 43 H 0.040 0.960 44 H 0.052 0.948 45 H 0.172 0.828 46 H 0.182 0.818 47 H 0.169 0.831 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.488 -2.502 18.612 24.342 hybrid contribution 0.683 -0.673 -1.339 1.647 sum -14.804 -3.174 17.272 22.969 Atomic orbital electron populations 1.21825 0.89647 1.03075 1.04868 1.20387 0.99512 1.00790 0.88006 0.84892 1.21062 0.79459 0.84201 0.85477 1.90722 1.39576 1.28585 1.87334 1.45792 1.53245 1.32239 1.04652 1.21215 0.98684 0.95961 0.83498 1.22686 0.98222 0.84878 0.96444 1.87965 1.71464 1.26083 1.45652 1.23262 0.97825 0.94432 0.87225 1.21154 0.82981 0.93441 1.00560 1.44116 1.02108 1.84748 1.02712 1.20320 0.91881 0.96805 0.86004 1.19585 1.02305 1.28508 0.88510 0.90727 1.25816 1.00768 0.97980 1.00702 1.70288 1.18359 1.34332 1.35436 0.85279 0.78635 0.76396 0.80211 1.21464 1.22724 1.18979 1.19376 0.97278 0.92972 0.95452 1.21500 0.96845 1.01732 0.94124 1.21356 0.98508 0.93220 0.97746 1.21433 0.99598 0.96440 1.00228 1.17983 1.00956 0.78867 0.97379 1.91453 1.91464 1.35418 1.94954 1.20916 1.02422 0.95710 0.96333 0.89652 0.92776 0.89323 0.74675 0.94270 0.89473 0.93077 0.89905 0.96281 0.91021 0.90954 0.91808 0.98380 0.97406 0.95968 0.94759 0.82765 0.81795 0.83110 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.90 71.98 0.64 -0.93 16 2 C -0.07 -1.14 2.90 -12.29 -0.04 -1.17 16 3 H 0.13 1.71 7.88 -2.38 -0.02 1.69 16 4 C 0.51 13.16 7.03 87.65 0.62 13.77 16 5 O -0.58 -20.65 15.13 -3.03 -0.05 -20.70 16 6 N -0.71 -16.44 5.40 -463.05 -2.50 -18.94 16 7 C 0.13 3.65 6.06 86.38 0.52 4.17 16 8 C 0.05 1.46 6.07 71.98 0.44 1.90 16 9 O -0.39 -13.62 9.84 -148.98 -1.47 -15.09 16 10 C 0.05 1.72 6.28 71.98 0.45 2.17 16 11 C 0.14 5.42 6.11 86.38 0.53 5.95 16 12 N -0.61 -30.59 2.89 -726.96 -2.10 -32.69 16 13 C 0.20 10.05 8.61 127.77 1.10 11.15 16 14 C -0.26 -14.09 9.67 84.03 0.81 -13.28 16 15 H 0.08 3.86 7.85 -2.91 -0.02 3.84 16 16 C -0.06 -3.29 5.12 84.86 0.43 -2.85 16 17 N -0.94 -57.15 10.62 21.65 0.23 -56.92 16 18 Si 0.97 45.56 29.57 68.60 2.03 47.59 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 C -0.05 -1.02 4.39 -19.87 -0.09 -1.11 16 23 C -0.12 -2.06 9.67 22.27 0.22 -1.84 16 24 C -0.09 -1.37 10.04 22.26 0.22 -1.15 16 25 C -0.16 -2.91 10.03 22.31 0.22 -2.69 16 26 C 0.07 1.60 7.30 22.37 0.16 1.76 16 27 F -0.15 -3.99 17.27 44.97 0.78 -3.22 16 28 C -0.13 -3.23 7.92 22.31 0.18 -3.06 16 29 H 0.08 0.69 7.57 -2.39 -0.02 0.67 16 30 H 0.05 0.74 7.37 -2.39 -0.02 0.72 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.42 7.35 7.89 -92.71 -0.73 6.62 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 2.49 8.03 -2.39 -0.02 2.47 16 40 H 0.06 2.13 7.87 -2.39 -0.02 2.11 16 41 H 0.00 -0.12 7.43 -2.39 -0.02 -0.14 16 42 H 0.01 0.41 7.20 -2.38 -0.02 0.39 16 43 H 0.02 0.98 7.85 -2.39 -0.02 0.96 16 44 H 0.24 14.57 8.31 -92.70 -0.77 13.79 16 45 H 0.15 1.74 7.94 -2.91 -0.02 1.72 16 46 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 47 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 48 H 0.12 2.99 7.51 -2.91 -0.02 2.97 16 Total: -1.00 -77.09 401.94 3.57 -73.52 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.22 Total: 13.65 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 6.42 Total: 12.79 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -4.37 Total: -108.55 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -1.51 Total: -35.78 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.22 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -77.09 3.57 -73.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283426391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.502 kcal (2) G-P(sol) polarization free energy of solvation -77.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds