Wall clock time and date at job start Tue Mar 31 2020 22:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.00157 * 2 1 4 4 C 1.54330 * 109.88419 * 238.90192 * 2 1 3 5 5 H 1.08996 * 110.71860 * 144.40944 * 4 2 1 6 6 N 1.46905 * 110.71604 * 21.13806 * 4 2 1 7 7 C 1.46899 * 110.99436 * 160.02166 * 6 4 2 8 8 C 1.50706 * 109.46736 * 180.02562 * 7 6 4 9 9 C 1.29436 * 117.96144 * 94.74301 * 8 7 6 10 10 C 1.50068 * 124.07969 * 180.23755 * 9 8 7 11 11 C 1.53029 * 110.19564 * 343.31285 * 10 9 8 12 12 C 1.53391 * 108.44075 * 49.25112 * 11 10 9 13 13 C 1.50064 * 117.96199 * 274.99907 * 8 7 6 14 14 C 1.55157 * 102.94049 * 262.77890 * 4 2 1 15 15 C 1.54901 * 101.58260 * 324.49554 * 14 4 2 16 16 N 1.47019 * 109.88261 * 121.09553 * 2 1 3 17 17 C 1.34783 * 125.64644 * 300.51020 * 16 2 1 18 18 O 1.21282 * 119.99989 * 359.97438 * 17 16 2 19 19 C 1.50699 * 119.99872 * 179.97438 * 17 16 2 20 20 S 1.81000 * 109.46890 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99841 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00228 * 0.02562 * 21 20 19 23 23 C 1.38798 * 119.99854 * 179.97438 * 21 20 19 24 24 N 1.31638 * 119.99611 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00238 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47019 * 89.99661 * 25 23 21 27 27 H 1.48503 * 109.47357 * 209.99821 * 25 23 21 28 28 H 1.48503 * 109.47039 * 329.99825 * 25 23 21 29 29 H 1.08997 * 109.47416 * 181.09089 * 1 2 3 30 30 H 1.08993 * 109.47099 * 301.10229 * 1 2 3 31 31 H 1.09007 * 109.46548 * 61.09641 * 1 2 3 32 32 H 1.00896 * 111.00268 * 283.97896 * 6 4 2 33 33 H 1.08994 * 109.47668 * 300.00097 * 7 6 4 34 34 H 1.08997 * 109.47263 * 60.00499 * 7 6 4 35 35 H 1.08000 * 117.96602 * 0.46206 * 9 8 7 36 36 H 1.08999 * 109.48525 * 222.99700 * 10 9 8 37 37 H 1.09003 * 109.06866 * 103.36950 * 10 9 8 38 38 H 1.08995 * 109.64086 * 289.56234 * 11 10 9 39 39 H 1.09007 * 109.64109 * 168.93026 * 11 10 9 40 40 H 1.08993 * 109.64399 * 172.87744 * 12 11 10 41 41 H 1.09003 * 109.81703 * 52.34655 * 12 11 10 42 42 H 1.08994 * 109.36216 * 283.05760 * 13 8 7 43 43 H 1.09004 * 109.35748 * 42.78026 * 13 8 7 44 44 H 1.09002 * 111.00633 * 82.57450 * 14 4 2 45 45 H 1.09002 * 110.99939 * 206.38229 * 14 4 2 46 46 H 1.09004 * 110.36831 * 155.84850 * 15 14 4 47 47 H 1.08999 * 110.37045 * 278.17261 * 15 14 4 48 48 H 1.09000 * 109.47166 * 300.00176 * 19 17 16 49 49 H 1.09003 * 109.47270 * 60.00383 * 19 17 16 50 50 H 0.96998 * 119.99405 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 2.9657 -0.2832 -1.6182 6 7 1.0265 -0.8029 -2.2904 7 6 1.6269 -1.0697 -3.6042 8 6 0.5439 -1.1164 -4.6512 9 6 0.2917 -0.0326 -5.3123 10 6 -0.7583 0.0768 -6.3789 11 6 -1.1778 -1.3167 -6.8521 12 6 -1.4851 -2.1758 -5.6190 13 6 -0.1791 -2.4150 -4.8583 14 6 2.3518 -2.1695 -0.6923 15 6 2.8568 -1.8498 0.7368 16 7 2.0300 -0.7140 1.1839 17 6 1.7742 -0.3852 2.4657 18 8 1.0770 0.5746 2.7180 19 6 2.3546 -1.2101 3.5854 20 16 1.8330 -0.5207 5.1756 21 6 2.6310 -1.6448 6.2730 22 1 3.2244 -2.4560 5.8776 23 6 2.4980 -1.4871 7.6455 24 7 3.0946 -2.3266 8.4653 25 14 1.4724 -0.0836 8.3294 26 1 0.0667 -0.5328 8.4950 27 1 2.0177 0.3319 9.6467 28 1 1.5174 1.0658 7.3902 29 1 -0.3634 -1.0274 0.0196 30 1 -0.3633 0.5308 0.8799 31 1 -0.3633 0.4968 -0.8997 32 1 0.3203 -1.4888 -2.0694 33 1 2.3338 -0.2769 -3.8485 34 1 2.1486 -2.0263 -3.5778 35 1 0.8756 0.8470 -5.0847 36 1 -0.3617 0.6408 -7.2231 37 1 -1.6259 0.5968 -5.9725 38 1 -0.3664 -1.7699 -7.4215 39 1 -2.0685 -1.2392 -7.4758 40 1 -1.9063 -3.1306 -5.9334 41 1 -2.1947 -1.6568 -4.9746 42 1 0.4534 -3.0934 -5.4308 43 1 -0.4041 -2.8617 -3.8898 44 1 1.4451 -2.7737 -0.6603 45 1 3.1265 -2.6622 -1.2800 46 1 2.7087 -2.7081 1.3923 47 1 3.9091 -1.5668 0.7129 48 1 2.0001 -2.2374 3.5013 49 1 3.4427 -1.1948 3.5218 50 1 3.0014 -2.2166 9.4245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283848037.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:08 Heat of formation + Delta-G solvation = -31.220159 kcal Electronic energy + Delta-G solvation = -26795.534754 eV Core-core repulsion = 23141.283037 eV Total energy + Delta-G solvation = -3654.251717 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.31771 -39.15873 -37.75899 -35.26449 -32.45433 -32.41107 -31.31939 -31.12919 -30.23372 -28.39176 -25.87122 -25.60640 -24.73940 -23.48338 -23.02049 -21.80364 -20.68681 -18.94532 -18.02104 -17.71512 -16.87970 -16.43791 -16.17213 -15.58378 -15.18194 -14.96085 -14.81722 -14.73728 -14.25321 -14.09148 -13.89931 -13.85074 -13.34648 -13.20951 -12.92992 -12.84924 -12.79018 -12.72623 -12.45472 -12.43363 -12.36120 -11.99041 -11.83770 -11.53245 -11.25809 -11.21762 -11.01758 -10.97931 -10.96729 -10.79857 -10.59033 -10.49047 -9.84430 -9.39995 -9.19403 -8.99496 -8.69069 -8.54117 -8.48094 -6.90724 -6.28296 -3.99790 1.86269 2.70336 2.99787 3.20237 3.34116 3.51768 3.60635 3.88221 4.22709 4.27351 4.31599 4.34389 4.41477 4.50921 4.69713 4.73216 4.81620 4.86271 4.97251 4.99946 5.08549 5.10037 5.10898 5.17590 5.18822 5.23217 5.36120 5.39239 5.44730 5.49623 5.50590 5.51016 5.55204 5.57562 5.63753 5.73139 5.79319 5.81554 5.91123 5.91855 6.02647 6.09044 6.30284 6.40547 6.52332 6.67399 6.70202 7.00955 7.64167 7.94794 8.41970 8.50120 9.18007 10.80898 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030935 B = 0.001905 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.891789 B =14693.436768 C =14959.582388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 H 0.075 0.925 4 C 0.082 3.918 5 H 0.094 0.906 6 N -0.668 5.668 7 C 0.092 3.908 8 C -0.127 4.127 9 C -0.132 4.132 10 C -0.092 4.092 11 C -0.120 4.120 12 C -0.120 4.120 13 C -0.082 4.082 14 C -0.163 4.163 15 C 0.102 3.898 16 N -0.623 5.623 17 C 0.548 3.452 18 O -0.515 6.515 19 C -0.118 4.118 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.881 5.881 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.346 0.654 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 -0.543 -32.603 32.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.093 0.907 4 C -0.029 4.029 5 H 0.112 0.888 6 N -0.299 5.299 7 C -0.037 4.037 8 C -0.127 4.127 9 C -0.151 4.151 10 C -0.129 4.129 11 C -0.158 4.158 12 C -0.157 4.157 13 C -0.119 4.119 14 C -0.203 4.203 15 C -0.021 4.021 16 N -0.360 5.360 17 C 0.337 3.663 18 O -0.389 6.389 19 C -0.268 4.268 20 S 0.085 5.915 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.166 0.834 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.112 0.888 49 H 0.113 0.887 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.103 1.538 -32.034 32.474 hybrid contribution 0.885 -1.757 0.426 2.013 sum -4.219 -0.219 -31.608 31.889 Atomic orbital electron populations 1.21952 0.94211 1.01758 1.03159 1.21376 0.95507 0.95673 0.83185 0.90698 1.22627 0.94613 0.94518 0.91178 0.88824 1.60529 1.13608 1.55151 1.00625 1.21068 0.94794 0.99936 0.87867 1.20676 0.98775 0.95539 0.97724 1.21933 0.98657 0.97394 0.97155 1.20465 0.97805 0.97380 0.97219 1.21600 1.01142 0.95580 0.97470 1.21590 0.97177 0.99946 0.97033 1.20370 0.95995 0.95048 1.00461 1.23506 1.02309 0.98101 0.96394 1.22212 0.95091 0.89848 0.94998 1.48570 1.51844 1.30703 1.04915 1.19927 0.80167 0.84779 0.81473 1.90691 1.37417 1.28170 1.82598 1.23263 1.04047 1.02349 0.97175 1.84786 1.68815 1.42334 0.95591 1.22314 1.36267 1.15407 0.92858 0.89440 1.24712 0.94729 0.96057 0.95809 1.69944 1.42105 1.36142 1.03524 0.86732 0.81011 0.84018 0.80085 1.19207 1.19942 1.15900 0.93465 0.91436 0.90527 0.83428 0.90599 0.94650 0.87754 0.91199 0.90799 0.91875 0.91821 0.91815 0.91556 0.91183 0.91380 0.90459 0.90016 0.90217 0.91174 0.88754 0.88661 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.19 37.16 0.30 -1.60 16 2 C 0.15 1.76 3.48 -66.95 -0.23 1.53 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.08 0.69 3.11 -65.87 -0.20 0.48 16 5 H 0.09 0.74 7.90 -51.93 -0.41 0.33 16 6 N -0.67 -5.08 4.86 -106.05 -0.52 -5.59 16 7 C 0.09 0.60 5.55 -4.97 -0.03 0.57 16 8 C -0.13 -0.84 5.35 -100.94 -0.54 -1.38 16 9 C -0.13 -0.90 9.37 -35.90 -0.34 -1.24 16 10 C -0.09 -0.53 6.12 -28.17 -0.17 -0.70 16 11 C -0.12 -0.64 6.01 -26.51 -0.16 -0.80 16 12 C -0.12 -0.67 6.01 -26.51 -0.16 -0.83 16 13 C -0.08 -0.48 5.80 -28.18 -0.16 -0.64 16 14 C -0.16 -1.26 6.63 -24.59 -0.16 -1.42 16 15 C 0.10 1.06 6.69 -2.53 -0.02 1.04 16 16 N -0.62 -8.72 3.08 -163.02 -0.50 -9.22 16 17 C 0.55 10.25 7.65 -10.98 -0.08 10.17 16 18 O -0.51 -11.43 14.77 5.56 0.08 -11.35 16 19 C -0.12 -2.36 5.16 36.01 0.19 -2.17 16 20 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 21 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 22 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 23 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 24 N -0.88 -26.68 13.97 55.49 0.78 -25.91 16 25 Si 0.86 21.98 27.74 -169.99 -4.71 17.27 16 26 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 29 H 0.05 0.56 7.88 -51.93 -0.41 0.15 16 30 H 0.07 1.06 6.76 -51.93 -0.35 0.71 16 31 H 0.08 0.86 7.40 -51.92 -0.38 0.48 16 32 H 0.35 2.62 7.52 -39.29 -0.30 2.33 16 33 H 0.08 0.51 7.74 -51.93 -0.40 0.11 16 34 H 0.04 0.22 8.11 -51.93 -0.42 -0.20 16 35 H 0.10 0.73 7.74 -52.49 -0.41 0.32 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 39 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.42 8.13 -51.93 -0.42 -0.01 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 44 H 0.08 0.60 7.81 -51.93 -0.41 0.20 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.83 7.48 -51.93 -0.39 0.44 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 1.77 7.85 -51.92 -0.41 1.36 16 49 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 50 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 402.74 15.07 6.07 6.07 Total: -1.00 -33.06 402.74 -11.28 -44.34 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -8.93 Total: -0.86 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -1.55 Total: -9.11 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -0.24 Total: -40.72 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.06 -11.28 -44.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283848037.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.121 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds