Wall clock time and date at job start Tue Mar 31 2020 22:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.00157 * 2 1 4 4 C 1.54330 * 109.88419 * 238.90192 * 2 1 3 5 5 H 1.08996 * 110.71860 * 144.40944 * 4 2 1 6 6 N 1.46905 * 110.71604 * 21.13806 * 4 2 1 7 7 C 1.46899 * 110.99436 * 160.02166 * 6 4 2 8 8 C 1.50706 * 109.46736 * 180.02562 * 7 6 4 9 9 C 1.29436 * 117.96144 * 94.74301 * 8 7 6 10 10 C 1.50068 * 124.07969 * 180.23755 * 9 8 7 11 11 C 1.53029 * 110.19564 * 343.31285 * 10 9 8 12 12 C 1.53391 * 108.44075 * 49.25112 * 11 10 9 13 13 C 1.50064 * 117.96199 * 274.99907 * 8 7 6 14 14 C 1.55157 * 102.94049 * 262.77890 * 4 2 1 15 15 C 1.54901 * 101.58260 * 324.49554 * 14 4 2 16 16 N 1.47019 * 109.88261 * 121.09553 * 2 1 3 17 17 C 1.34783 * 125.64644 * 300.51020 * 16 2 1 18 18 O 1.21282 * 119.99989 * 359.97438 * 17 16 2 19 19 C 1.50699 * 119.99872 * 179.97438 * 17 16 2 20 20 S 1.81000 * 109.46890 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99841 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00228 * 0.02562 * 21 20 19 23 23 C 1.38798 * 119.99854 * 179.97438 * 21 20 19 24 24 N 1.31638 * 119.99611 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00238 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47019 * 89.99661 * 25 23 21 27 27 H 1.48503 * 109.47357 * 209.99821 * 25 23 21 28 28 H 1.48503 * 109.47039 * 329.99825 * 25 23 21 29 29 H 1.08997 * 109.47416 * 181.09089 * 1 2 3 30 30 H 1.08993 * 109.47099 * 301.10229 * 1 2 3 31 31 H 1.09007 * 109.46548 * 61.09641 * 1 2 3 32 32 H 1.00896 * 111.00268 * 283.97896 * 6 4 2 33 33 H 1.08994 * 109.47668 * 300.00097 * 7 6 4 34 34 H 1.08997 * 109.47263 * 60.00499 * 7 6 4 35 35 H 1.08000 * 117.96602 * 0.46206 * 9 8 7 36 36 H 1.08999 * 109.48525 * 222.99700 * 10 9 8 37 37 H 1.09003 * 109.06866 * 103.36950 * 10 9 8 38 38 H 1.08995 * 109.64086 * 289.56234 * 11 10 9 39 39 H 1.09007 * 109.64109 * 168.93026 * 11 10 9 40 40 H 1.08993 * 109.64399 * 172.87744 * 12 11 10 41 41 H 1.09003 * 109.81703 * 52.34655 * 12 11 10 42 42 H 1.08994 * 109.36216 * 283.05760 * 13 8 7 43 43 H 1.09004 * 109.35748 * 42.78026 * 13 8 7 44 44 H 1.09002 * 111.00633 * 82.57450 * 14 4 2 45 45 H 1.09002 * 110.99939 * 206.38229 * 14 4 2 46 46 H 1.09004 * 110.36831 * 155.84850 * 15 14 4 47 47 H 1.08999 * 110.37045 * 278.17261 * 15 14 4 48 48 H 1.09000 * 109.47166 * 300.00176 * 19 17 16 49 49 H 1.09003 * 109.47270 * 60.00383 * 19 17 16 50 50 H 0.96998 * 119.99405 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 2.9657 -0.2832 -1.6182 6 7 1.0265 -0.8029 -2.2904 7 6 1.6269 -1.0697 -3.6042 8 6 0.5439 -1.1164 -4.6512 9 6 0.2917 -0.0326 -5.3123 10 6 -0.7583 0.0768 -6.3789 11 6 -1.1778 -1.3167 -6.8521 12 6 -1.4851 -2.1758 -5.6190 13 6 -0.1791 -2.4150 -4.8583 14 6 2.3518 -2.1695 -0.6923 15 6 2.8568 -1.8498 0.7368 16 7 2.0300 -0.7140 1.1839 17 6 1.7742 -0.3852 2.4657 18 8 1.0770 0.5746 2.7180 19 6 2.3546 -1.2101 3.5854 20 16 1.8330 -0.5207 5.1756 21 6 2.6310 -1.6448 6.2730 22 1 3.2244 -2.4560 5.8776 23 6 2.4980 -1.4871 7.6455 24 7 3.0946 -2.3266 8.4653 25 14 1.4724 -0.0836 8.3294 26 1 0.0667 -0.5328 8.4950 27 1 2.0177 0.3319 9.6467 28 1 1.5174 1.0658 7.3902 29 1 -0.3634 -1.0274 0.0196 30 1 -0.3633 0.5308 0.8799 31 1 -0.3633 0.4968 -0.8997 32 1 0.3203 -1.4888 -2.0694 33 1 2.3338 -0.2769 -3.8485 34 1 2.1486 -2.0263 -3.5778 35 1 0.8756 0.8470 -5.0847 36 1 -0.3617 0.6408 -7.2231 37 1 -1.6259 0.5968 -5.9725 38 1 -0.3664 -1.7699 -7.4215 39 1 -2.0685 -1.2392 -7.4758 40 1 -1.9063 -3.1306 -5.9334 41 1 -2.1947 -1.6568 -4.9746 42 1 0.4534 -3.0934 -5.4308 43 1 -0.4041 -2.8617 -3.8898 44 1 1.4451 -2.7737 -0.6603 45 1 3.1265 -2.6622 -1.2800 46 1 2.7087 -2.7081 1.3923 47 1 3.9091 -1.5668 0.7129 48 1 2.0001 -2.2374 3.5013 49 1 3.4427 -1.1948 3.5218 50 1 3.0014 -2.2166 9.4245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283848037.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:08 Heat of formation + Delta-G solvation = -50.579444 kcal Electronic energy + Delta-G solvation = -26796.374236 eV Core-core repulsion = 23141.283037 eV Total energy + Delta-G solvation = -3655.091198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.39005 -39.76404 -38.85372 -36.06058 -34.68674 -33.30182 -32.18304 -31.61538 -31.25377 -29.60447 -27.86037 -26.64910 -25.39681 -24.00710 -23.94444 -22.25627 -21.62251 -20.27587 -19.57400 -18.48921 -18.11887 -17.41444 -17.13103 -16.99944 -16.47721 -16.18057 -15.91741 -15.66099 -15.19629 -14.96393 -14.93990 -14.60158 -14.56614 -14.52248 -13.91141 -13.78810 -13.70501 -13.48415 -13.36346 -13.34110 -13.12316 -13.03920 -13.01531 -12.87792 -12.70119 -12.53430 -12.41310 -11.88930 -11.82392 -11.71205 -11.63971 -11.28305 -11.18469 -10.99246 -10.87144 -10.55456 -9.72911 -9.68660 -9.27015 -9.02276 -8.52989 -6.24219 0.94626 1.30083 1.35100 1.44881 1.52474 1.53285 2.04211 2.23925 2.66856 2.85133 3.21190 3.44561 3.56713 3.80231 3.82537 3.91369 4.05585 4.09597 4.15185 4.18046 4.32507 4.36210 4.37421 4.40969 4.44372 4.54973 4.61952 4.67201 4.70326 4.75622 4.76331 4.79422 4.88424 4.98523 5.03891 5.07556 5.07981 5.08423 5.12060 5.22798 5.36246 5.36635 5.47927 5.49500 5.69349 5.81921 6.06585 6.09503 6.20199 6.38606 6.42456 6.92113 7.08983 8.59317 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030935 B = 0.001905 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.891789 B =14693.436768 C =14959.582388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.140 3.860 3 H 0.061 0.939 4 C 0.097 3.903 5 H 0.106 0.894 6 N -0.673 5.673 7 C 0.096 3.904 8 C -0.129 4.129 9 C -0.143 4.143 10 C -0.093 4.093 11 C -0.119 4.119 12 C -0.121 4.121 13 C -0.082 4.082 14 C -0.149 4.149 15 C 0.090 3.910 16 N -0.613 5.613 17 C 0.547 3.453 18 O -0.559 6.559 19 C -0.102 4.102 20 S -0.175 6.175 21 C -0.529 4.529 22 H 0.062 0.938 23 C 0.047 3.953 24 N -0.915 5.915 25 Si 0.913 3.087 26 H -0.262 1.262 27 H -0.257 1.257 28 H -0.239 1.239 29 H 0.052 0.948 30 H 0.029 0.971 31 H 0.088 0.912 32 H 0.348 0.652 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.110 0.890 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.108 0.892 49 H 0.109 0.891 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 -1.099 -34.904 35.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.036 3.964 3 H 0.079 0.921 4 C -0.015 4.015 5 H 0.124 0.876 6 N -0.304 5.304 7 C -0.032 4.032 8 C -0.130 4.130 9 C -0.162 4.162 10 C -0.130 4.130 11 C -0.157 4.157 12 C -0.158 4.158 13 C -0.119 4.119 14 C -0.189 4.189 15 C -0.032 4.032 16 N -0.348 5.348 17 C 0.335 3.665 18 O -0.438 6.438 19 C -0.253 4.253 20 S 0.052 5.948 21 C -0.676 4.676 22 H 0.081 0.919 23 C -0.159 4.159 24 N -0.553 5.553 25 Si 0.735 3.265 26 H -0.187 1.187 27 H -0.182 1.182 28 H -0.163 1.163 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.168 0.832 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.128 0.872 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.126 0.874 49 H 0.127 0.873 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.902 0.948 -34.384 34.745 hybrid contribution 0.871 -1.642 0.967 2.095 sum -4.031 -0.693 -33.417 33.666 Atomic orbital electron populations 1.21823 0.94607 1.01630 1.01877 1.21570 0.95206 0.95576 0.84039 0.92114 1.22468 0.94861 0.94478 0.89657 0.87569 1.60450 1.13558 1.55558 1.00873 1.21054 0.94707 1.00510 0.86959 1.20786 0.98811 0.95796 0.97591 1.22049 0.99022 0.97412 0.97700 1.20483 0.97452 0.97824 0.97219 1.21597 1.01452 0.95166 0.97441 1.21596 0.96993 1.00258 0.96988 1.20388 0.96030 0.94733 1.00705 1.23484 1.03255 0.97629 0.94515 1.22580 0.95467 0.88469 0.96699 1.48519 1.51034 1.31411 1.03833 1.19624 0.80007 0.84161 0.82730 1.90675 1.39579 1.29978 1.83544 1.23208 1.04872 1.02843 0.94336 1.84727 1.68962 1.42402 0.98750 1.22438 1.36017 1.15327 0.93857 0.91942 1.25541 0.95791 0.98326 0.96193 1.70015 1.43365 1.37735 1.04176 0.85880 0.79687 0.81016 0.79874 1.18674 1.18160 1.16252 0.92847 0.95203 0.89292 0.83237 0.90635 0.93455 0.88218 0.90575 0.91166 0.91764 0.91186 0.91084 0.92459 0.90570 0.91150 0.90179 0.87158 0.90073 0.89560 0.87369 0.87295 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.19 71.98 0.59 -2.86 16 2 C 0.14 3.18 3.48 45.34 0.16 3.34 16 3 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 4 C 0.10 1.34 3.11 46.10 0.14 1.48 16 5 H 0.11 1.29 7.90 -2.39 -0.02 1.27 16 6 N -0.67 -8.44 4.86 -489.43 -2.38 -10.81 16 7 C 0.10 0.98 5.55 85.56 0.47 1.46 16 8 C -0.13 -1.45 5.35 -15.09 -0.08 -1.53 16 9 C -0.14 -1.74 9.37 27.04 0.25 -1.49 16 10 C -0.09 -0.96 6.12 29.66 0.18 -0.78 16 11 C -0.12 -1.08 6.01 30.73 0.18 -0.90 16 12 C -0.12 -1.16 6.01 30.74 0.18 -0.97 16 13 C -0.08 -0.78 5.80 29.66 0.17 -0.61 16 14 C -0.15 -1.73 6.63 31.98 0.21 -1.52 16 15 C 0.09 1.61 6.69 86.85 0.58 2.19 16 16 N -0.61 -16.33 3.08 -788.05 -2.43 -18.75 16 17 C 0.55 20.30 7.65 87.66 0.67 20.97 16 18 O -0.56 -25.31 14.77 -3.04 -0.04 -25.36 16 19 C -0.10 -4.03 5.16 71.24 0.37 -3.66 16 20 S -0.17 -9.08 18.55 -56.49 -1.05 -10.13 16 21 C -0.53 -31.17 10.04 67.95 0.68 -30.49 16 22 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 23 C 0.05 2.79 5.50 84.86 0.47 3.25 16 24 N -0.92 -55.93 13.97 21.65 0.30 -55.62 16 25 Si 0.91 45.55 27.74 68.60 1.90 47.45 16 26 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 28 H -0.24 -11.95 6.74 99.48 0.67 -11.28 16 29 H 0.05 1.21 7.88 -2.39 -0.02 1.19 16 30 H 0.03 0.95 6.76 -2.39 -0.02 0.94 16 31 H 0.09 1.92 7.40 -2.38 -0.02 1.90 16 32 H 0.35 4.29 7.52 -89.70 -0.67 3.62 16 33 H 0.08 0.80 7.74 -2.39 -0.02 0.79 16 34 H 0.05 0.40 8.11 -2.39 -0.02 0.38 16 35 H 0.10 1.28 7.74 -2.91 -0.02 1.25 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.57 8.12 -2.39 -0.02 0.55 16 39 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 42 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 0.64 8.11 -2.38 -0.02 0.62 16 44 H 0.08 0.95 7.81 -2.39 -0.02 0.93 16 45 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.08 1.47 7.48 -2.38 -0.02 1.45 16 47 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.11 3.97 7.85 -2.40 -0.02 3.95 16 49 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 50 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -72.79 402.74 1.74 -71.04 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.20 Total: 14.30 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 5.24 Total: -12.12 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -4.50 Total: -85.19 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.04 Total: -25.36 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.90 Total: 47.45 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.13 kcal Total: -72.79 1.74 -71.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283848037.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.466 kcal (2) G-P(sol) polarization free energy of solvation -72.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds