Wall clock time and date at job start Tue Mar 31 2020 20:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46913 * 2 1 4 4 N 1.46495 * 109.47232 * 120.00405 * 2 1 3 5 5 C 1.46501 * 119.99803 * 301.81118 * 4 2 1 6 6 C 1.52994 * 109.47638 * 269.99843 * 5 4 2 7 7 N 1.46501 * 109.47638 * 179.97438 * 6 5 4 8 8 C 1.46499 * 119.99944 * 270.00598 * 7 6 5 9 9 C 1.36931 * 119.99650 * 90.00122 * 7 6 5 10 10 H 1.07995 * 120.00500 * 22.54446 * 9 7 6 11 11 C 1.38813 * 119.99711 * 202.53763 * 9 7 6 12 12 N 1.31617 * 120.00269 * 12.76719 * 11 9 7 13 13 Si 1.86803 * 120.00083 * 192.76349 * 11 9 7 14 14 H 1.48507 * 109.47058 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47160 * 119.99878 * 13 11 9 16 16 H 1.48497 * 109.47508 * 240.00621 * 13 11 9 17 17 C 1.34775 * 120.00064 * 121.81675 * 4 2 1 18 18 O 1.21283 * 119.99861 * 184.88671 * 17 4 2 19 19 C 1.50691 * 119.99978 * 4.88155 * 17 4 2 20 20 O 1.42903 * 109.47169 * 175.11621 * 19 17 4 21 21 C 1.35954 * 117.00162 * 180.02562 * 20 19 17 22 22 C 1.38665 * 120.06045 * 359.97438 * 21 20 19 23 23 C 1.38180 * 119.96685 * 180.02562 * 22 21 20 24 24 C 1.38267 * 120.09926 * 359.97438 * 23 22 21 25 25 C 1.38254 * 120.12251 * 0.02562 * 24 23 22 26 26 C 1.38334 * 120.03054 * 359.97438 * 25 24 23 27 27 F 1.35105 * 120.04687 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.46647 * 305.76792 * 1 2 3 29 29 H 1.08996 * 109.47189 * 65.76382 * 1 2 3 30 30 H 1.09000 * 109.47039 * 185.77066 * 1 2 3 31 31 H 1.09003 * 109.47078 * 240.00722 * 2 1 3 32 32 H 1.09004 * 109.46626 * 173.28430 * 3 2 1 33 33 H 1.08991 * 109.47516 * 293.28445 * 3 2 1 34 34 H 1.09006 * 109.46982 * 53.28763 * 3 2 1 35 35 H 1.09005 * 109.46985 * 30.00695 * 5 4 2 36 36 H 1.09005 * 109.46616 * 150.00032 * 5 4 2 37 37 H 1.08996 * 109.47601 * 300.01060 * 6 5 4 38 38 H 1.09011 * 109.46682 * 60.00069 * 6 5 4 39 39 H 1.09006 * 109.47317 * 94.54592 * 8 7 6 40 40 H 1.08995 * 109.47030 * 214.54308 * 8 7 6 41 41 H 1.09002 * 109.47201 * 334.54694 * 8 7 6 42 42 H 0.96997 * 120.00033 * 179.97438 * 12 11 9 43 43 H 1.09005 * 109.47400 * 55.12234 * 19 17 4 44 44 H 1.09002 * 109.47478 * 295.11987 * 19 17 4 45 45 H 1.07991 * 120.02070 * 0.04295 * 22 21 20 46 46 H 1.08006 * 119.95346 * 180.27834 * 23 22 21 47 47 H 1.07998 * 119.93796 * 179.97438 * 24 23 22 48 48 H 1.07997 * 119.98456 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6320 -0.2138 2.5263 6 6 2.6531 0.8150 3.0159 7 7 2.2664 1.2923 4.3459 8 6 1.3917 2.4600 4.4793 9 6 2.7224 0.6470 5.4642 10 1 3.6189 0.0470 5.4136 11 6 2.0325 0.7642 6.6630 12 7 0.8204 1.2771 6.6773 13 14 2.8241 0.1938 8.2559 14 1 4.1803 -0.3401 7.9712 15 1 2.9308 1.3401 9.1938 16 1 1.9909 -0.8716 8.8690 17 6 2.8231 -1.7647 1.0727 18 8 3.1556 -2.3897 2.0575 19 6 3.3098 -2.1891 -0.2889 20 8 4.2309 -3.2727 -0.1491 21 6 4.7680 -3.7774 -1.2915 22 6 4.4155 -3.2414 -2.5208 23 6 4.9622 -3.7562 -3.6807 24 6 5.8609 -4.8051 -3.6175 25 6 6.2152 -5.3425 -2.3940 26 6 5.6710 -4.8311 -1.2295 27 9 6.0174 -5.3557 -0.0336 28 1 -0.3633 0.6007 0.8339 29 1 -0.3633 0.4218 -0.9370 30 1 -0.3633 -1.0225 0.1033 31 1 1.8933 -0.5137 -0.8901 32 1 3.1234 1.4448 0.1202 33 1 1.7781 1.9205 -0.9439 34 1 1.5818 1.9898 0.8239 35 1 0.6463 0.2488 2.4743 36 1 1.6026 -1.0547 3.2193 37 1 3.6387 0.3525 3.0678 38 1 2.6825 1.6559 2.3228 39 1 0.3572 2.1300 4.5748 40 1 1.6755 3.0270 5.3659 41 1 1.4917 3.0916 3.5966 42 1 0.3382 1.3587 7.5149 43 1 3.8074 -1.3497 -0.7748 44 1 2.4618 -2.5088 -0.8945 45 1 3.7142 -2.4217 -2.5717 46 1 4.6909 -3.3356 -4.6377 47 1 6.2863 -5.2058 -4.5258 48 1 6.9177 -6.1615 -2.3473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284559795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:43 Heat of formation + Delta-G solvation = -56.671984 kcal Electronic energy + Delta-G solvation = -29780.500328 eV Core-core repulsion = 25558.931761 eV Total energy + Delta-G solvation = -4221.568567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.89623 -40.61428 -39.59238 -37.68878 -36.61048 -35.42416 -32.04467 -31.25545 -31.03207 -30.61901 -29.23781 -27.50888 -27.09911 -25.81433 -23.73846 -22.97587 -22.64845 -21.85610 -20.49193 -18.90553 -18.80087 -17.33523 -17.29285 -16.77334 -16.63119 -16.52703 -15.70725 -15.58046 -15.16210 -14.90065 -14.67646 -14.37930 -14.19594 -14.12312 -13.53562 -13.33212 -13.26061 -13.14912 -12.99266 -12.68410 -12.48007 -12.27996 -12.18489 -12.05082 -11.75314 -11.58661 -11.49806 -11.37027 -11.16302 -11.02979 -10.84276 -10.74556 -10.46193 -10.08124 -9.89448 -9.68634 -9.53609 -9.30429 -8.63760 -8.50778 -8.39998 -6.72092 -5.68935 -3.13814 0.77272 0.91584 2.38092 2.72296 3.23223 3.36952 3.44320 3.51130 3.55414 3.96273 4.24437 4.41660 4.52555 4.56120 4.58837 4.69424 4.79047 4.85356 4.87672 4.98199 5.04997 5.12600 5.46606 5.50410 5.53244 5.60482 5.69030 5.72188 5.73671 5.74287 5.81516 5.83061 6.00637 6.08611 6.13241 6.25994 6.27822 6.35655 6.60380 6.71420 6.79306 6.95740 7.06413 7.37041 7.58809 7.71618 7.89587 8.34321 8.44915 9.28639 9.90501 10.37992 11.36534 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013716 B = 0.002774 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.887644 B =10091.741209 C =11714.698651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.128 3.872 3 C -0.167 4.167 4 N -0.600 5.600 5 C 0.094 3.906 6 C 0.139 3.861 7 N -0.598 5.598 8 C 0.163 3.837 9 C -0.250 4.250 10 H 0.070 0.930 11 C 0.001 3.999 12 N -0.910 5.910 13 Si 0.904 3.096 14 H -0.277 1.277 15 H -0.290 1.290 16 H -0.290 1.290 17 C 0.509 3.491 18 O -0.505 6.505 19 C 0.041 3.959 20 O -0.279 6.279 21 C 0.101 3.899 22 C -0.186 4.186 23 C -0.090 4.090 24 C -0.133 4.133 25 C -0.117 4.117 26 C 0.072 3.928 27 F -0.128 7.128 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.029 0.971 40 H 0.044 0.956 41 H -0.004 1.004 42 H 0.251 0.749 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.138 0.862 46 H 0.132 0.868 47 H 0.134 0.866 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.786 -5.649 -26.769 27.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.024 3.976 3 C -0.225 4.225 4 N -0.336 5.336 5 C -0.030 4.030 6 C 0.011 3.989 7 N -0.321 5.321 8 C 0.019 3.981 9 C -0.380 4.380 10 H 0.088 0.912 11 C -0.197 4.197 12 N -0.556 5.556 13 Si 0.734 3.266 14 H -0.202 1.202 15 H -0.217 1.217 16 H -0.217 1.217 17 C 0.294 3.706 18 O -0.378 6.378 19 C -0.038 4.038 20 O -0.191 6.191 21 C 0.054 3.946 22 C -0.205 4.205 23 C -0.108 4.108 24 C -0.151 4.151 25 C -0.135 4.135 26 C 0.052 3.948 27 F -0.107 7.107 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.015 0.985 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.155 0.845 46 H 0.150 0.850 47 H 0.152 0.848 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.905 -6.007 -25.784 26.761 hybrid contribution 0.092 -0.240 0.891 0.927 sum 3.997 -6.248 -24.893 25.974 Atomic orbital electron populations 1.22179 0.94509 1.02781 1.02776 1.21182 0.95027 0.94025 0.87408 1.22316 1.01985 0.95496 1.02664 1.48234 1.48559 1.28641 1.08175 1.22657 0.99845 1.00066 0.80385 1.21296 0.96093 0.94218 0.87305 1.43986 1.57477 1.30383 1.00222 1.20812 0.94407 0.87035 0.95864 1.19311 1.05161 1.26332 0.87187 0.91198 1.25013 0.95365 1.00557 0.98739 1.70066 1.10383 1.49848 1.25269 0.86172 0.78887 0.77859 0.83647 1.20203 1.21681 1.21702 1.19834 0.80019 0.81098 0.89648 1.90812 1.55448 1.52535 1.39046 1.22692 0.93280 0.89801 0.97992 1.86273 1.57135 1.48213 1.27493 1.19144 0.94767 0.94135 0.86597 1.21195 1.04681 1.03440 0.91185 1.21016 0.95939 0.95863 0.97963 1.20932 0.99347 0.97654 0.97163 1.21055 1.00742 1.01073 0.90678 1.17051 0.99853 0.95864 0.82026 1.91550 1.90716 1.85198 1.43194 0.91304 0.91502 0.92203 0.90146 0.91972 0.91741 0.90987 0.91022 0.89590 0.93797 0.93939 0.95282 0.93739 0.98548 0.93871 0.89027 0.89099 0.84468 0.84979 0.84850 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.00 37.16 0.33 -1.24 16 2 C 0.13 1.30 3.14 -67.93 -0.21 1.08 16 3 C -0.17 -1.63 7.96 37.16 0.30 -1.34 16 4 N -0.60 -8.96 2.40 -166.11 -0.40 -9.36 16 5 C 0.09 1.80 5.28 -4.04 -0.02 1.78 16 6 C 0.14 2.93 5.78 -4.04 -0.02 2.91 16 7 N -0.60 -15.32 2.92 -181.12 -0.53 -15.85 16 8 C 0.16 3.99 9.02 59.85 0.54 4.53 16 9 C -0.25 -7.18 9.66 -15.06 -0.15 -7.33 16 10 H 0.07 2.04 7.85 -52.49 -0.41 1.63 16 11 C 0.00 0.03 5.10 -17.43 -0.09 -0.06 16 12 N -0.91 -26.91 10.67 55.49 0.59 -26.32 16 13 Si 0.90 22.89 29.57 -169.99 -5.03 17.86 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 17 C 0.51 8.43 7.74 -10.99 -0.09 8.35 16 18 O -0.50 -11.25 16.06 -14.31 -0.23 -11.48 16 19 C 0.04 0.48 3.54 36.00 0.13 0.61 16 20 O -0.28 -4.18 9.54 -39.46 -0.38 -4.56 16 21 C 0.10 1.22 6.69 -39.18 -0.26 0.96 16 22 C -0.19 -1.57 9.04 -39.44 -0.36 -1.92 16 23 C -0.09 -0.60 10.04 -39.59 -0.40 -0.99 16 24 C -0.13 -0.89 10.04 -39.56 -0.40 -1.29 16 25 C -0.12 -1.01 10.02 -39.54 -0.40 -1.41 16 26 C 0.07 0.88 7.31 -39.30 -0.29 0.59 16 27 F -0.13 -1.91 17.11 2.25 0.04 -1.87 16 28 H 0.07 0.77 6.86 -51.93 -0.36 0.42 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.58 5.81 -51.93 -0.30 0.28 16 32 H 0.06 0.64 8.05 -51.93 -0.42 0.23 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.85 6.70 -51.93 -0.35 0.50 16 35 H 0.07 1.33 6.46 -51.93 -0.34 1.00 16 36 H 0.09 2.02 7.36 -51.93 -0.38 1.64 16 37 H 0.04 1.00 8.03 -51.93 -0.42 0.59 16 38 H 0.04 0.78 5.24 -51.92 -0.27 0.51 16 39 H 0.03 0.76 7.39 -51.93 -0.38 0.37 16 40 H 0.04 1.17 7.26 -51.93 -0.38 0.80 16 41 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.09 0.81 7.32 -51.93 -0.38 0.43 16 44 H 0.09 0.78 7.30 -51.93 -0.38 0.41 16 45 H 0.14 0.82 6.30 -52.49 -0.33 0.49 16 46 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 47 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 48 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 391.66 15.07 5.90 5.90 Total: -1.00 -35.65 391.66 -8.58 -44.23 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -7.17 Total: -3.80 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.38 Total: 5.24 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.34 Total: -51.53 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.61 Total: -16.04 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.65 -8.58 -44.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284559795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.443 kcal (2) G-P(sol) polarization free energy of solvation -35.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds