Wall clock time and date at job start Tue Mar 31 2020 20:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46913 * 2 1 4 4 N 1.46495 * 109.47232 * 120.00405 * 2 1 3 5 5 C 1.46501 * 119.99803 * 301.81118 * 4 2 1 6 6 C 1.52994 * 109.47638 * 269.99843 * 5 4 2 7 7 N 1.46501 * 109.47638 * 179.97438 * 6 5 4 8 8 C 1.46499 * 119.99944 * 270.00598 * 7 6 5 9 9 C 1.36931 * 119.99650 * 90.00122 * 7 6 5 10 10 H 1.07995 * 120.00500 * 22.54446 * 9 7 6 11 11 C 1.38813 * 119.99711 * 202.53763 * 9 7 6 12 12 N 1.31617 * 120.00269 * 12.76719 * 11 9 7 13 13 Si 1.86803 * 120.00083 * 192.76349 * 11 9 7 14 14 H 1.48507 * 109.47058 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47160 * 119.99878 * 13 11 9 16 16 H 1.48497 * 109.47508 * 240.00621 * 13 11 9 17 17 C 1.34775 * 120.00064 * 121.81675 * 4 2 1 18 18 O 1.21283 * 119.99861 * 184.88671 * 17 4 2 19 19 C 1.50691 * 119.99978 * 4.88155 * 17 4 2 20 20 O 1.42903 * 109.47169 * 175.11621 * 19 17 4 21 21 C 1.35954 * 117.00162 * 180.02562 * 20 19 17 22 22 C 1.38665 * 120.06045 * 359.97438 * 21 20 19 23 23 C 1.38180 * 119.96685 * 180.02562 * 22 21 20 24 24 C 1.38267 * 120.09926 * 359.97438 * 23 22 21 25 25 C 1.38254 * 120.12251 * 0.02562 * 24 23 22 26 26 C 1.38334 * 120.03054 * 359.97438 * 25 24 23 27 27 F 1.35105 * 120.04687 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.46647 * 305.76792 * 1 2 3 29 29 H 1.08996 * 109.47189 * 65.76382 * 1 2 3 30 30 H 1.09000 * 109.47039 * 185.77066 * 1 2 3 31 31 H 1.09003 * 109.47078 * 240.00722 * 2 1 3 32 32 H 1.09004 * 109.46626 * 173.28430 * 3 2 1 33 33 H 1.08991 * 109.47516 * 293.28445 * 3 2 1 34 34 H 1.09006 * 109.46982 * 53.28763 * 3 2 1 35 35 H 1.09005 * 109.46985 * 30.00695 * 5 4 2 36 36 H 1.09005 * 109.46616 * 150.00032 * 5 4 2 37 37 H 1.08996 * 109.47601 * 300.01060 * 6 5 4 38 38 H 1.09011 * 109.46682 * 60.00069 * 6 5 4 39 39 H 1.09006 * 109.47317 * 94.54592 * 8 7 6 40 40 H 1.08995 * 109.47030 * 214.54308 * 8 7 6 41 41 H 1.09002 * 109.47201 * 334.54694 * 8 7 6 42 42 H 0.96997 * 120.00033 * 179.97438 * 12 11 9 43 43 H 1.09005 * 109.47400 * 55.12234 * 19 17 4 44 44 H 1.09002 * 109.47478 * 295.11987 * 19 17 4 45 45 H 1.07991 * 120.02070 * 0.04295 * 22 21 20 46 46 H 1.08006 * 119.95346 * 180.27834 * 23 22 21 47 47 H 1.07998 * 119.93796 * 179.97438 * 24 23 22 48 48 H 1.07997 * 119.98456 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6320 -0.2138 2.5263 6 6 2.6531 0.8150 3.0159 7 7 2.2664 1.2923 4.3459 8 6 1.3917 2.4600 4.4793 9 6 2.7224 0.6470 5.4642 10 1 3.6189 0.0470 5.4136 11 6 2.0325 0.7642 6.6630 12 7 0.8204 1.2771 6.6773 13 14 2.8241 0.1938 8.2559 14 1 4.1803 -0.3401 7.9712 15 1 2.9308 1.3401 9.1938 16 1 1.9909 -0.8716 8.8690 17 6 2.8231 -1.7647 1.0727 18 8 3.1556 -2.3897 2.0575 19 6 3.3098 -2.1891 -0.2889 20 8 4.2309 -3.2727 -0.1491 21 6 4.7680 -3.7774 -1.2915 22 6 4.4155 -3.2414 -2.5208 23 6 4.9622 -3.7562 -3.6807 24 6 5.8609 -4.8051 -3.6175 25 6 6.2152 -5.3425 -2.3940 26 6 5.6710 -4.8311 -1.2295 27 9 6.0174 -5.3557 -0.0336 28 1 -0.3633 0.6007 0.8339 29 1 -0.3633 0.4218 -0.9370 30 1 -0.3633 -1.0225 0.1033 31 1 1.8933 -0.5137 -0.8901 32 1 3.1234 1.4448 0.1202 33 1 1.7781 1.9205 -0.9439 34 1 1.5818 1.9898 0.8239 35 1 0.6463 0.2488 2.4743 36 1 1.6026 -1.0547 3.2193 37 1 3.6387 0.3525 3.0678 38 1 2.6825 1.6559 2.3228 39 1 0.3572 2.1300 4.5748 40 1 1.6755 3.0270 5.3659 41 1 1.4917 3.0916 3.5966 42 1 0.3382 1.3587 7.5149 43 1 3.8074 -1.3497 -0.7748 44 1 2.4618 -2.5088 -0.8945 45 1 3.7142 -2.4217 -2.5717 46 1 4.6909 -3.3356 -4.6377 47 1 6.2863 -5.2058 -4.5258 48 1 6.9177 -6.1615 -2.3473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284559795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:42 Heat of formation + Delta-G solvation = -78.604576 kcal Electronic energy + Delta-G solvation = -29781.451396 eV Core-core repulsion = 25558.931761 eV Total energy + Delta-G solvation = -4222.519635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.84499 -41.63292 -40.60697 -38.54937 -37.94293 -37.21255 -33.77955 -32.59728 -31.76116 -31.56598 -30.44097 -28.66594 -28.06795 -27.87866 -25.28545 -23.86650 -23.42297 -22.83267 -22.34482 -19.94947 -19.73090 -18.86879 -18.28567 -18.12325 -17.65455 -17.47602 -17.03670 -16.75840 -16.54750 -15.86835 -15.75152 -15.53196 -15.39622 -15.19655 -15.09128 -14.94419 -14.45186 -14.20420 -14.07329 -13.86888 -13.71461 -13.36902 -13.22375 -13.15819 -12.88424 -12.81430 -12.75194 -12.64004 -12.41711 -12.19587 -12.15257 -12.13273 -12.07413 -12.03656 -11.85565 -11.46190 -10.87982 -10.72637 -9.93298 -9.87092 -9.25318 -8.81108 -7.89898 -5.37067 0.14171 0.26531 1.34129 1.40148 1.41033 1.50371 1.52176 2.34909 2.48264 2.62450 3.22955 3.24830 3.30678 3.69794 3.77094 3.81199 3.91906 3.99892 4.00099 4.13474 4.16125 4.28752 4.31143 4.35734 4.50406 4.54113 4.57519 4.72746 4.81961 4.84096 4.93027 4.99561 5.01369 5.05031 5.10914 5.13042 5.27974 5.29593 5.39293 5.43692 5.44112 5.53290 5.59438 5.69243 5.70620 6.20132 6.28321 6.40388 7.08908 7.11386 7.81542 8.21574 9.13006 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013716 B = 0.002774 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.887644 B =10091.741209 C =11714.698651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.120 3.880 3 C -0.166 4.166 4 N -0.593 5.593 5 C 0.115 3.885 6 C 0.146 3.854 7 N -0.615 5.615 8 C 0.178 3.822 9 C -0.264 4.264 10 H 0.053 0.947 11 C -0.046 4.046 12 N -0.932 5.932 13 Si 0.963 3.037 14 H -0.277 1.277 15 H -0.280 1.280 16 H -0.290 1.290 17 C 0.499 3.501 18 O -0.580 6.580 19 C 0.049 3.951 20 O -0.326 6.326 21 C 0.071 3.929 22 C -0.181 4.181 23 C -0.079 4.079 24 C -0.124 4.124 25 C -0.118 4.118 26 C 0.023 3.977 27 F -0.159 7.159 28 H 0.045 0.955 29 H 0.103 0.897 30 H 0.052 0.948 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.017 0.983 38 H 0.078 0.922 39 H 0.008 0.992 40 H 0.017 0.983 41 H 0.038 0.962 42 H 0.250 0.750 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.168 0.832 46 H 0.173 0.827 47 H 0.169 0.831 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -4.627 -31.823 32.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.018 3.982 3 C -0.224 4.224 4 N -0.328 5.328 5 C -0.011 4.011 6 C 0.019 3.981 7 N -0.339 5.339 8 C 0.033 3.967 9 C -0.395 4.395 10 H 0.071 0.929 11 C -0.242 4.242 12 N -0.578 5.578 13 Si 0.791 3.209 14 H -0.202 1.202 15 H -0.207 1.207 16 H -0.217 1.217 17 C 0.287 3.713 18 O -0.459 6.459 19 C -0.028 4.028 20 O -0.239 6.239 21 C 0.025 3.975 22 C -0.199 4.199 23 C -0.096 4.096 24 C -0.142 4.142 25 C -0.137 4.137 26 C 0.003 3.997 27 F -0.138 7.138 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.036 0.964 38 H 0.096 0.904 39 H 0.026 0.974 40 H 0.036 0.964 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.186 0.814 46 H 0.191 0.809 47 H 0.186 0.814 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.783 -4.959 -30.919 31.542 hybrid contribution 0.150 -0.567 2.252 2.327 sum 3.932 -5.526 -28.667 29.459 Atomic orbital electron populations 1.22181 0.93826 1.02221 1.03782 1.21684 0.95601 0.94499 0.86391 1.22313 1.01370 0.94835 1.03833 1.48243 1.47942 1.28523 1.08051 1.21945 0.99531 0.97396 0.82182 1.21328 0.94970 0.95613 0.86182 1.44174 1.57652 1.30982 1.01097 1.20598 0.92799 0.86746 0.96538 1.19404 1.04875 1.26308 0.88893 0.92929 1.25685 0.95975 1.01163 1.01373 1.70192 1.11166 1.50731 1.25725 0.85268 0.77904 0.77501 0.80195 1.20157 1.20659 1.21737 1.20873 0.78954 0.80370 0.91113 1.90779 1.58093 1.55020 1.41991 1.22777 0.94721 0.90747 0.94536 1.86199 1.58323 1.49474 1.29944 1.19470 0.95821 0.95037 0.87162 1.21581 1.04689 1.03700 0.89964 1.21554 0.94330 0.94828 0.98937 1.21428 0.98467 0.97008 0.97284 1.21346 1.00618 1.01360 0.90384 1.17734 1.02189 0.97697 0.82082 1.91454 1.91288 1.85874 1.45223 0.93578 0.87836 0.92933 0.85685 0.92504 0.87925 0.93262 0.90266 0.95001 0.96401 0.90383 0.97370 0.96424 0.94324 0.94028 0.85231 0.85116 0.81432 0.80944 0.81376 0.82695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.00 71.98 0.65 -1.95 16 2 C 0.12 2.02 3.14 44.99 0.14 2.16 16 3 C -0.17 -2.61 7.96 71.98 0.57 -2.03 16 4 N -0.59 -17.51 2.40 -797.84 -1.91 -19.42 16 5 C 0.11 4.60 5.28 86.38 0.46 5.06 16 6 C 0.15 6.33 5.78 86.38 0.50 6.83 16 7 N -0.62 -32.59 2.92 -726.94 -2.13 -34.71 16 8 C 0.18 8.79 9.02 127.77 1.15 9.94 16 9 C -0.26 -15.86 9.66 84.03 0.81 -15.05 16 10 H 0.05 3.27 7.85 -2.91 -0.02 3.25 16 11 C -0.05 -2.77 5.10 84.86 0.43 -2.33 16 12 N -0.93 -56.72 10.67 21.65 0.23 -56.49 16 13 Si 0.96 48.57 29.57 68.60 2.03 50.60 16 14 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 15 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 16 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 17 C 0.50 16.84 7.74 87.65 0.68 17.52 16 18 O -0.58 -27.94 16.06 15.95 0.26 -27.69 16 19 C 0.05 1.07 3.54 71.23 0.25 1.32 16 20 O -0.33 -9.93 9.54 -74.04 -0.71 -10.64 16 21 C 0.07 1.67 6.69 22.53 0.15 1.82 16 22 C -0.18 -2.33 9.04 22.36 0.20 -2.13 16 23 C -0.08 -0.64 10.04 22.26 0.22 -0.42 16 24 C -0.12 -1.17 10.04 22.28 0.22 -0.95 16 25 C -0.12 -1.91 10.02 22.30 0.22 -1.69 16 26 C 0.02 0.57 7.31 22.45 0.16 0.73 16 27 F -0.16 -5.23 17.11 44.97 0.77 -4.46 16 28 H 0.05 0.96 6.86 -2.38 -0.02 0.94 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.13 1.06 5.81 -2.39 -0.01 1.05 16 32 H 0.06 0.98 8.05 -2.38 -0.02 0.96 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 1.01 6.70 -2.38 -0.02 1.00 16 35 H 0.08 3.03 6.46 -2.38 -0.02 3.02 16 36 H 0.03 1.62 7.36 -2.38 -0.02 1.60 16 37 H 0.02 0.85 8.03 -2.39 -0.02 0.83 16 38 H 0.08 2.80 5.24 -2.38 -0.01 2.79 16 39 H 0.01 0.43 7.39 -2.38 -0.02 0.41 16 40 H 0.02 0.93 7.26 -2.39 -0.02 0.91 16 41 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16 42 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 43 H 0.13 1.75 7.32 -2.38 -0.02 1.73 16 44 H 0.13 1.71 7.30 -2.39 -0.02 1.69 16 45 H 0.17 0.98 6.30 -2.92 -0.02 0.96 16 46 H 0.17 0.08 8.06 -2.91 -0.02 0.05 16 47 H 0.17 0.43 8.06 -2.91 -0.02 0.40 16 48 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -88.59 391.66 6.34 -82.26 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: 0.96 Total: 1.72 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 6.83 Total: 18.83 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -3.81 Total: -110.63 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.45 Total: -38.33 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.77 Total: -4.46 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -88.59 6.34 -82.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284559795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.653 kcal (2) G-P(sol) polarization free energy of solvation -88.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds