Wall clock time and date at job start Tue Mar 31 2020 22:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99962 * 2 1 4 4 H 1.09000 * 109.47368 * 329.99878 * 3 2 1 5 5 C 1.52999 * 109.47435 * 90.00003 * 3 2 1 6 6 C 1.53004 * 109.47145 * 209.99908 * 3 2 1 7 7 C 1.53003 * 109.46899 * 64.99797 * 6 3 2 8 8 C 1.50699 * 109.46847 * 180.02562 * 7 6 3 9 9 O 1.21277 * 120.00620 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99786 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00061 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47151 * 180.02562 * 11 10 8 13 13 C 1.38221 * 120.01073 * 260.01872 * 12 11 10 14 14 C 1.38220 * 120.02576 * 179.72487 * 13 12 11 15 15 C 1.38277 * 120.04953 * 0.51339 * 14 13 12 16 16 C 1.50700 * 119.98580 * 179.77046 * 15 14 13 17 17 N 1.46498 * 109.46769 * 269.71637 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72432 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47213 * 60.00246 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47081 * 299.99875 * 22 20 18 26 26 C 1.38170 * 120.02576 * 359.48562 * 15 14 13 27 27 C 1.38441 * 120.01389 * 80.00236 * 12 11 10 28 28 F 1.35100 * 120.02602 * 359.97438 * 27 12 11 29 29 H 1.09003 * 109.47335 * 300.00219 * 1 2 3 30 30 H 1.08998 * 109.47230 * 60.00641 * 1 2 3 31 31 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47011 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.46828 * 299.99612 * 5 3 2 34 34 H 1.09000 * 109.46944 * 59.99615 * 5 3 2 35 35 H 1.09000 * 109.46857 * 304.99928 * 6 3 2 36 36 H 1.08995 * 109.47243 * 185.00033 * 6 3 2 37 37 H 1.08991 * 109.47422 * 60.00190 * 7 6 3 38 38 H 1.09002 * 109.47232 * 299.99800 * 7 6 3 39 39 H 0.97003 * 120.00316 * 359.97438 * 10 8 7 40 40 H 1.09000 * 109.47450 * 60.00120 * 11 10 8 41 41 H 1.09004 * 109.47141 * 299.99581 * 11 10 8 42 42 H 1.07997 * 119.98840 * 359.97438 * 13 12 11 43 43 H 1.07998 * 119.98077 * 180.25523 * 14 13 12 44 44 H 1.09004 * 109.47210 * 149.71995 * 16 15 14 45 45 H 1.08994 * 109.47121 * 29.71965 * 16 15 14 46 46 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 47 47 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 48 48 H 1.07998 * 120.01636 * 180.23671 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3589 1.2632 -0.7212 7 6 3.1383 0.9183 -2.1955 8 6 4.4667 0.8761 -2.9057 9 8 5.4893 1.1003 -2.2933 10 7 4.5184 0.5902 -4.2218 11 6 5.8098 0.5498 -4.9124 12 6 5.5924 0.2112 -6.3647 13 6 5.7963 -1.0809 -6.8114 14 6 5.5915 -1.3930 -8.1422 15 6 5.1927 -0.4111 -9.0303 16 6 4.9748 -0.7519 -10.4820 17 7 6.2250 -0.5608 -11.2213 18 6 6.2711 -0.8161 -12.5660 19 1 5.3847 -1.1540 -13.0822 20 6 7.4572 -0.6406 -13.2655 21 7 8.5376 -0.2293 -12.6362 22 14 7.5199 -0.9882 -15.0997 23 1 6.5544 -0.1066 -15.8039 24 1 8.8909 -0.7261 -15.6066 25 1 7.1646 -2.4087 -15.3468 26 6 4.9882 0.8812 -8.5861 27 6 5.1880 1.1940 -7.2519 28 9 4.9875 2.4570 -6.8163 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.6606 2.7674 1.4424 33 1 1.2568 1.8015 1.9562 34 1 2.8829 1.0775 1.9563 35 1 3.9931 0.5051 -0.2617 36 1 3.8427 2.2369 -0.6443 37 1 2.5041 1.6763 -2.6550 38 1 2.6545 -0.0555 -2.2724 39 1 3.7006 0.4113 -4.7118 40 1 6.4439 -0.2086 -4.4532 41 1 6.2937 1.5234 -4.8353 42 1 6.1119 -1.8477 -6.1195 43 1 5.7471 -2.4037 -8.4896 44 1 4.2046 -0.1013 -10.8964 45 1 4.6572 -1.7910 -10.5675 46 1 7.0213 -0.2577 -10.7577 47 1 9.3663 -0.1063 -13.1251 48 1 4.6730 1.6472 -9.2791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285005781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:33 Heat of formation + Delta-G solvation = -108.944312 kcal Electronic energy + Delta-G solvation = -27893.489555 eV Core-core repulsion = 23669.654290 eV Total energy + Delta-G solvation = -4223.835265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.83173 -40.08093 -39.17122 -38.64802 -35.64211 -34.39207 -34.07391 -32.23354 -30.88679 -30.50815 -30.00690 -27.38345 -27.02893 -25.13316 -23.96711 -22.82027 -22.44118 -21.49379 -20.79793 -20.50575 -17.63827 -17.43799 -17.25529 -16.64566 -16.58516 -16.31737 -15.74897 -15.57942 -15.49363 -15.29491 -15.08312 -14.66883 -14.03439 -13.97501 -13.86818 -13.60704 -13.44342 -13.37536 -13.22980 -13.00639 -12.68936 -12.64490 -12.30294 -12.05978 -11.91522 -11.84225 -11.74777 -11.48233 -11.41820 -11.09100 -11.00765 -10.83646 -10.68644 -10.16404 -10.15149 -10.00057 -9.82476 -9.26742 -8.96059 -8.81585 -8.52368 -7.01904 -5.81890 -3.12831 1.11576 1.31878 2.48085 3.02929 3.35532 3.41005 3.45242 3.46677 3.71139 4.28243 4.33966 4.40061 4.48007 4.56719 4.63835 4.76678 4.80354 4.85620 4.91040 4.93993 5.08568 5.10852 5.17873 5.21065 5.28715 5.29598 5.45742 5.47331 5.51068 5.55155 5.59180 5.66055 5.73277 5.90509 5.92773 6.05307 6.08516 6.14638 6.19125 6.34798 6.39027 6.47219 6.78406 6.88919 6.99157 7.30000 7.63087 8.03704 8.35178 9.46969 10.00959 10.36511 11.40248 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029141 B = 0.001647 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.599434 B =16995.986631 C =17312.938224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.139 4.139 8 C 0.513 3.487 9 O -0.543 6.543 10 N -0.725 5.725 11 C 0.167 3.833 12 C -0.157 4.157 13 C -0.075 4.075 14 C -0.115 4.115 15 C -0.037 4.037 16 C 0.184 3.816 17 N -0.726 5.726 18 C -0.247 4.247 19 H 0.072 0.928 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C -0.140 4.140 27 C 0.110 3.890 28 F -0.140 7.140 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.402 0.598 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.386 0.614 47 H 0.257 0.743 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.130 1.834 25.572 30.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.025 3.975 4 H 0.079 0.921 5 C -0.232 4.232 6 C -0.138 4.138 7 C -0.179 4.179 8 C 0.300 3.700 9 O -0.420 6.420 10 N -0.377 5.377 11 C 0.044 3.956 12 C -0.159 4.159 13 C -0.094 4.094 14 C -0.134 4.134 15 C -0.037 4.037 16 C 0.057 3.943 17 N -0.371 5.371 18 C -0.378 4.378 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.741 3.259 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.159 4.159 27 C 0.090 3.910 28 F -0.118 7.118 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.236 0.764 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.220 0.780 47 H 0.067 0.933 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.303 1.845 25.855 30.101 hybrid contribution -0.240 0.335 -1.188 1.258 sum -15.543 2.181 24.667 29.237 Atomic orbital electron populations 1.22786 0.81250 1.02767 0.99877 1.87945 1.19463 1.27853 1.95081 1.22212 0.94871 0.84639 0.95749 0.92072 1.22267 1.02313 1.01931 0.96714 1.21461 0.95618 1.03863 0.92895 1.21644 0.95122 1.04708 0.96407 1.20737 0.91633 0.75972 0.81707 1.90707 1.36377 1.48915 1.66012 1.46130 1.09902 1.72114 1.09591 1.20031 0.85612 1.02791 0.87132 1.19737 1.07111 0.94109 0.94941 1.20915 0.97878 0.94560 0.96044 1.21214 0.99352 1.00292 0.92514 1.20255 0.94236 0.91987 0.97261 1.19733 0.91282 0.98430 0.84851 1.42310 1.07172 1.81357 1.06262 1.19182 0.95772 1.38394 0.84419 0.91021 1.24772 0.95741 1.01914 0.98236 1.69664 1.00590 1.52257 1.35285 0.86232 0.76670 0.78029 0.85001 1.21180 1.21626 1.21171 1.21132 1.03195 0.98043 0.93535 1.17530 1.01679 0.78981 0.92784 1.91482 1.92624 1.37532 1.90177 0.94209 0.93997 0.89659 0.91406 0.92540 0.91561 0.90125 0.89774 0.89135 0.88181 0.76417 0.90181 0.90486 0.85110 0.84941 0.95081 0.94875 0.77992 0.93325 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.01 9.88 -35.23 -0.35 -3.36 16 3 C 0.08 0.55 2.72 -26.73 -0.07 0.47 16 4 H 0.06 0.33 7.79 -51.93 -0.40 -0.08 16 5 C -0.17 -1.03 9.53 37.16 0.35 -0.67 16 6 C -0.10 -0.79 4.21 -26.73 -0.11 -0.90 16 7 C -0.14 -1.04 5.60 -27.88 -0.16 -1.20 16 8 C 0.51 5.54 7.83 -10.98 -0.09 5.46 16 9 O -0.54 -7.94 15.98 5.56 0.09 -7.85 16 10 N -0.73 -7.21 5.55 -61.47 -0.34 -7.56 16 11 C 0.17 1.93 5.52 -5.20 -0.03 1.90 16 12 C -0.16 -1.95 5.25 -104.55 -0.55 -2.50 16 13 C -0.08 -0.91 9.67 -39.59 -0.38 -1.29 16 14 C -0.12 -1.62 9.70 -39.57 -0.38 -2.00 16 15 C -0.04 -0.59 5.25 -104.63 -0.55 -1.14 16 16 C 0.18 3.53 6.38 -5.19 -0.03 3.50 16 17 N -0.73 -17.97 5.59 -61.09 -0.34 -18.31 16 18 C -0.25 -6.76 9.99 -15.06 -0.15 -6.91 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 22 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 C -0.14 -2.14 9.68 -39.51 -0.38 -2.52 16 27 C 0.11 1.55 7.25 -39.41 -0.29 1.26 16 28 F -0.14 -2.01 16.66 2.25 0.04 -1.97 16 29 H 0.04 0.17 7.87 -51.93 -0.41 -0.24 16 30 H 0.04 0.18 8.08 -51.93 -0.42 -0.24 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.29 7.87 -51.93 -0.41 -0.12 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.77 8.10 -51.93 -0.42 0.34 16 36 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.68 7.82 -51.93 -0.41 0.28 16 39 H 0.40 3.22 8.46 -40.82 -0.35 2.87 16 40 H 0.08 0.90 8.01 -51.93 -0.42 0.49 16 41 H 0.08 1.00 7.95 -51.93 -0.41 0.58 16 42 H 0.13 1.27 8.04 -52.49 -0.42 0.84 16 43 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.03 0.59 8.09 -51.93 -0.42 0.17 16 45 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 46 H 0.39 10.24 7.66 -40.82 -0.31 9.92 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 409.24 15.07 6.17 6.17 Total: -1.00 -32.74 409.24 -8.58 -41.31 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.72 Total: 7.40 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -1.82 Total: -5.68 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.04 Total: -53.02 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.26 Total: -11.21 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.74 -8.58 -41.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285005781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.631 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds