Wall clock time and date at job start Tue Mar 31 2020 22:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99962 * 2 1 4 4 H 1.09000 * 109.47368 * 329.99878 * 3 2 1 5 5 C 1.52999 * 109.47435 * 90.00003 * 3 2 1 6 6 C 1.53004 * 109.47145 * 209.99908 * 3 2 1 7 7 C 1.53003 * 109.46899 * 64.99797 * 6 3 2 8 8 C 1.50699 * 109.46847 * 180.02562 * 7 6 3 9 9 O 1.21277 * 120.00620 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99786 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00061 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47151 * 180.02562 * 11 10 8 13 13 C 1.38221 * 120.01073 * 260.01872 * 12 11 10 14 14 C 1.38220 * 120.02576 * 179.72487 * 13 12 11 15 15 C 1.38277 * 120.04953 * 0.51339 * 14 13 12 16 16 C 1.50700 * 119.98580 * 179.77046 * 15 14 13 17 17 N 1.46498 * 109.46769 * 269.71637 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72432 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47213 * 60.00246 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47081 * 299.99875 * 22 20 18 26 26 C 1.38170 * 120.02576 * 359.48562 * 15 14 13 27 27 C 1.38441 * 120.01389 * 80.00236 * 12 11 10 28 28 F 1.35100 * 120.02602 * 359.97438 * 27 12 11 29 29 H 1.09003 * 109.47335 * 300.00219 * 1 2 3 30 30 H 1.08998 * 109.47230 * 60.00641 * 1 2 3 31 31 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47011 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.46828 * 299.99612 * 5 3 2 34 34 H 1.09000 * 109.46944 * 59.99615 * 5 3 2 35 35 H 1.09000 * 109.46857 * 304.99928 * 6 3 2 36 36 H 1.08995 * 109.47243 * 185.00033 * 6 3 2 37 37 H 1.08991 * 109.47422 * 60.00190 * 7 6 3 38 38 H 1.09002 * 109.47232 * 299.99800 * 7 6 3 39 39 H 0.97003 * 120.00316 * 359.97438 * 10 8 7 40 40 H 1.09000 * 109.47450 * 60.00120 * 11 10 8 41 41 H 1.09004 * 109.47141 * 299.99581 * 11 10 8 42 42 H 1.07997 * 119.98840 * 359.97438 * 13 12 11 43 43 H 1.07998 * 119.98077 * 180.25523 * 14 13 12 44 44 H 1.09004 * 109.47210 * 149.71995 * 16 15 14 45 45 H 1.08994 * 109.47121 * 29.71965 * 16 15 14 46 46 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 47 47 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 48 48 H 1.07998 * 120.01636 * 180.23671 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3589 1.2632 -0.7212 7 6 3.1383 0.9183 -2.1955 8 6 4.4667 0.8761 -2.9057 9 8 5.4893 1.1003 -2.2933 10 7 4.5184 0.5902 -4.2218 11 6 5.8098 0.5498 -4.9124 12 6 5.5924 0.2112 -6.3647 13 6 5.7963 -1.0809 -6.8114 14 6 5.5915 -1.3930 -8.1422 15 6 5.1927 -0.4111 -9.0303 16 6 4.9748 -0.7519 -10.4820 17 7 6.2250 -0.5608 -11.2213 18 6 6.2711 -0.8161 -12.5660 19 1 5.3847 -1.1540 -13.0822 20 6 7.4572 -0.6406 -13.2655 21 7 8.5376 -0.2293 -12.6362 22 14 7.5199 -0.9882 -15.0997 23 1 6.5544 -0.1066 -15.8039 24 1 8.8909 -0.7261 -15.6066 25 1 7.1646 -2.4087 -15.3468 26 6 4.9882 0.8812 -8.5861 27 6 5.1880 1.1940 -7.2519 28 9 4.9875 2.4570 -6.8163 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.6606 2.7674 1.4424 33 1 1.2568 1.8015 1.9562 34 1 2.8829 1.0775 1.9563 35 1 3.9931 0.5051 -0.2617 36 1 3.8427 2.2369 -0.6443 37 1 2.5041 1.6763 -2.6550 38 1 2.6545 -0.0555 -2.2724 39 1 3.7006 0.4113 -4.7118 40 1 6.4439 -0.2086 -4.4532 41 1 6.2937 1.5234 -4.8353 42 1 6.1119 -1.8477 -6.1195 43 1 5.7471 -2.4037 -8.4896 44 1 4.2046 -0.1013 -10.8964 45 1 4.6572 -1.7910 -10.5675 46 1 7.0213 -0.2577 -10.7577 47 1 9.3663 -0.1063 -13.1251 48 1 4.6730 1.6472 -9.2791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285005781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:32 Heat of formation + Delta-G solvation = -129.793221 kcal Electronic energy + Delta-G solvation = -27894.393631 eV Core-core repulsion = 23669.654290 eV Total energy + Delta-G solvation = -4224.739342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.97247 -40.98179 -40.23084 -39.22301 -36.96720 -35.82679 -34.68547 -33.76204 -32.12547 -31.56317 -31.03860 -28.60044 -27.51883 -26.36474 -25.08917 -24.09814 -23.80173 -22.09140 -21.96494 -21.33159 -19.39058 -18.40328 -17.91174 -17.79329 -17.67326 -17.28755 -16.76132 -16.54324 -16.45858 -16.27142 -15.93881 -15.83523 -15.41836 -15.19339 -14.95903 -14.69871 -14.64809 -14.49663 -14.11637 -13.78052 -13.66546 -13.42338 -13.31000 -13.18547 -13.12075 -12.92296 -12.72295 -12.54421 -12.41988 -12.22242 -12.21330 -12.04924 -11.95292 -11.77245 -11.52633 -11.03553 -10.97149 -10.51423 -10.17059 -9.95012 -9.66297 -9.03577 -7.95293 -5.25844 -0.01198 0.20649 1.49073 1.51912 1.58116 1.63970 2.14976 2.53782 2.67123 2.90912 3.16464 3.38512 3.44126 3.68352 3.74184 3.82600 3.90314 4.10396 4.14050 4.21865 4.22514 4.31478 4.36812 4.49561 4.51249 4.55205 4.58838 4.65124 4.73547 4.76464 4.81044 4.81511 4.92629 4.95494 4.99908 5.03707 5.07093 5.14331 5.21812 5.27896 5.32159 5.38310 5.48927 5.62532 5.86234 6.24894 6.34519 6.50833 7.21892 7.32169 8.04180 8.28477 9.27583 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029141 B = 0.001647 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.599434 B =16995.986631 C =17312.938224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.085 3.915 4 H 0.079 0.921 5 C -0.175 4.175 6 C -0.099 4.099 7 C -0.130 4.130 8 C 0.511 3.489 9 O -0.585 6.585 10 N -0.717 5.717 11 C 0.170 3.830 12 C -0.141 4.141 13 C -0.063 4.063 14 C -0.115 4.115 15 C -0.054 4.054 16 C 0.185 3.815 17 N -0.740 5.740 18 C -0.249 4.249 19 H 0.081 0.919 20 C -0.073 4.073 21 N -0.969 5.969 22 Si 0.976 3.024 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.275 1.275 26 C -0.148 4.148 27 C 0.104 3.896 28 F -0.143 7.143 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.413 0.587 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.163 0.837 43 H 0.141 0.859 44 H 0.033 0.967 45 H 0.043 0.957 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.925 1.196 26.225 31.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.028 3.972 4 H 0.097 0.903 5 C -0.232 4.232 6 C -0.137 4.137 7 C -0.169 4.169 8 C 0.299 3.701 9 O -0.466 6.466 10 N -0.369 5.369 11 C 0.047 3.953 12 C -0.143 4.143 13 C -0.081 4.081 14 C -0.133 4.133 15 C -0.055 4.055 16 C 0.059 3.941 17 N -0.383 5.383 18 C -0.381 4.381 19 H 0.099 0.901 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.805 3.195 23 H -0.204 1.204 24 H -0.224 1.224 25 H -0.201 1.201 26 C -0.168 4.168 27 C 0.084 3.916 28 F -0.121 7.121 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.250 0.750 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.180 0.820 43 H 0.159 0.841 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.205 0.795 47 H 0.060 0.940 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.181 1.189 26.504 31.608 hybrid contribution 0.239 0.535 -1.289 1.416 sum -16.942 1.724 25.215 30.428 Atomic orbital electron populations 1.22941 0.79949 1.03529 1.00789 1.87914 1.20982 1.28500 1.95226 1.22210 0.94300 0.84725 0.96010 0.90310 1.22267 1.02546 1.01983 0.96410 1.21417 0.96165 1.02822 0.93296 1.21650 0.93399 1.06145 0.95714 1.21328 0.92296 0.74817 0.81635 1.90693 1.38092 1.50882 1.66885 1.46043 1.09821 1.71582 1.09477 1.19930 0.86489 1.02256 0.86625 1.19833 1.05539 0.93855 0.95069 1.21189 0.96334 0.94977 0.95633 1.21346 0.98733 1.00207 0.93051 1.19994 0.96637 0.92929 0.95916 1.19805 0.89012 0.98831 0.86451 1.42511 1.08586 1.81246 1.05915 1.19637 0.95896 1.36722 0.85826 0.90131 1.25599 0.95606 1.02781 1.02581 1.69829 1.00984 1.54341 1.36750 0.85180 0.76197 0.78255 0.79909 1.20357 1.22360 1.20117 1.21085 1.03773 0.97744 0.94162 1.17563 1.02200 0.79225 0.92608 1.91474 1.92715 1.37834 1.90110 0.93508 0.92848 0.89082 0.90671 0.91703 0.92780 0.92352 0.90269 0.86669 0.87013 0.75039 0.89469 0.91940 0.81951 0.84130 0.94863 0.93893 0.79462 0.94007 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.42 16 2 O -0.41 -5.73 9.88 -148.98 -1.47 -7.20 16 3 C 0.08 0.99 2.72 30.60 0.08 1.07 16 4 H 0.08 0.64 7.79 -2.39 -0.02 0.62 16 5 C -0.17 -1.86 9.53 71.98 0.69 -1.18 16 6 C -0.10 -1.47 4.21 30.60 0.13 -1.34 16 7 C -0.13 -1.68 5.60 29.85 0.17 -1.52 16 8 C 0.51 10.37 7.83 87.66 0.69 11.06 16 9 O -0.59 -16.95 15.98 -3.02 -0.05 -17.00 16 10 N -0.72 -12.90 5.55 -466.79 -2.59 -15.49 16 11 C 0.17 3.66 5.52 85.63 0.47 4.14 16 12 C -0.14 -3.25 5.25 -19.82 -0.10 -3.35 16 13 C -0.06 -1.36 9.67 22.26 0.22 -1.14 16 14 C -0.11 -3.02 9.70 22.27 0.22 -2.81 16 15 C -0.05 -1.70 5.25 -19.87 -0.10 -1.81 16 16 C 0.18 7.02 6.38 85.63 0.55 7.56 16 17 N -0.74 -36.79 5.59 -347.18 -1.94 -38.73 16 18 C -0.25 -13.62 9.99 84.03 0.84 -12.78 16 19 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 20 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 21 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 22 Si 0.98 45.36 29.55 68.60 2.03 47.39 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 C -0.15 -4.50 9.68 22.31 0.22 -4.28 16 27 C 0.10 2.81 7.25 22.38 0.16 2.98 16 28 F -0.14 -4.00 16.66 44.97 0.75 -3.25 16 29 H 0.05 0.31 7.87 -2.39 -0.02 0.29 16 30 H 0.05 0.31 8.08 -2.39 -0.02 0.29 16 31 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.57 7.87 -2.39 -0.02 0.56 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.08 1.24 8.10 -2.39 -0.02 1.22 16 37 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.11 1.25 7.82 -2.39 -0.02 1.23 16 39 H 0.41 5.58 8.46 -92.71 -0.78 4.80 16 40 H 0.09 1.79 8.01 -2.39 -0.02 1.77 16 41 H 0.06 1.56 7.95 -2.39 -0.02 1.55 16 42 H 0.16 2.51 8.04 -2.91 -0.02 2.49 16 43 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 44 H 0.03 1.25 8.09 -2.38 -0.02 1.23 16 45 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 46 H 0.37 20.16 7.66 -92.71 -0.71 19.45 16 47 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 48 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -70.89 409.24 2.39 -68.51 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -0.53 Total: 30.16 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 5.90 Total: -5.67 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -4.25 Total: -112.94 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -1.52 Total: -24.20 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.75 Total: -3.25 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -70.89 2.39 -68.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285005781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.287 kcal (2) G-P(sol) polarization free energy of solvation -70.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds