Wall clock time and date at job start Tue Mar 31 2020 22:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47066 * 197.18029 * 3 2 1 5 5 N 1.46901 * 109.46890 * 180.02562 * 4 3 2 6 6 C 1.46907 * 110.99657 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46719 * 174.01748 * 6 5 4 8 8 N 1.46499 * 109.47351 * 301.87402 * 7 6 5 9 9 C 1.34773 * 119.99765 * 67.13744 * 8 7 6 10 10 O 1.21279 * 120.00546 * 355.82543 * 9 8 7 11 11 C 1.50703 * 120.00012 * 175.83147 * 9 8 7 12 12 S 1.80995 * 109.47430 * 179.97438 * 11 9 8 13 13 C 1.76201 * 100.00305 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99844 * 0.02562 * 13 12 11 15 15 C 1.38799 * 120.00069 * 180.02562 * 13 12 11 16 16 N 1.31632 * 119.99572 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00071 * 359.72420 * 15 13 12 18 18 H 1.48509 * 109.47007 * 270.27609 * 17 15 13 19 19 H 1.48507 * 109.47230 * 30.27390 * 17 15 13 20 20 H 1.48501 * 109.47300 * 150.27763 * 17 15 13 21 21 C 1.52997 * 109.47302 * 61.87931 * 7 6 5 22 22 C 1.52998 * 109.47302 * 179.97438 * 21 7 6 23 23 C 1.52999 * 109.46879 * 299.99517 * 22 21 7 24 24 C 1.53003 * 109.47066 * 60.00224 * 23 22 21 25 25 C 1.52998 * 109.47088 * 299.99648 * 24 23 22 26 26 H 1.08997 * 109.47267 * 300.00521 * 25 24 23 27 27 C 1.52997 * 109.47302 * 179.97438 * 25 24 23 28 28 H 4.44645 * 5.63467 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.47264 * 77.18162 * 3 2 1 30 30 H 1.08998 * 109.47552 * 317.18020 * 3 2 1 31 31 H 1.08995 * 109.47193 * 60.00222 * 4 3 2 32 32 H 1.08998 * 109.46995 * 299.99821 * 4 3 2 33 33 H 1.00896 * 111.00153 * 56.04624 * 5 4 3 34 34 H 1.08997 * 109.46613 * 54.02173 * 6 5 4 35 35 H 1.08993 * 109.47255 * 294.01816 * 6 5 4 36 36 H 0.97003 * 120.00217 * 247.13015 * 8 7 6 37 37 H 1.09004 * 109.46816 * 59.99362 * 11 9 8 38 38 H 1.09002 * 109.47022 * 300.00066 * 11 9 8 39 39 H 0.97007 * 119.99526 * 179.72420 * 16 15 13 40 40 H 1.09008 * 109.46714 * 299.99377 * 21 7 6 41 41 H 1.08997 * 109.47585 * 59.99428 * 21 7 6 42 42 H 1.09002 * 109.46826 * 179.97438 * 22 21 7 43 43 H 1.08996 * 109.47741 * 59.99459 * 22 21 7 44 44 H 1.09008 * 109.47423 * 300.00062 * 23 22 21 45 45 H 1.09002 * 109.47151 * 180.02562 * 23 22 21 46 46 H 1.08998 * 109.46899 * 180.02562 * 24 23 22 47 47 H 1.08996 * 109.47070 * 60.00354 * 24 23 22 48 48 H 1.08996 * 109.47164 * 300.00895 * 27 25 24 49 49 H 1.09008 * 109.46714 * 60.00623 * 27 25 24 50 50 H 1.08999 * 109.47130 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1553 1.3790 0.4261 5 7 4.6243 1.3798 0.4255 6 6 5.1502 2.6906 0.8300 7 6 6.6724 2.6107 0.9618 8 7 7.0244 1.5791 1.9406 9 6 6.7757 0.2821 1.6717 10 8 6.1924 -0.0251 0.6537 11 6 7.2223 -0.7865 2.6359 12 16 6.7448 -2.4119 1.9988 13 6 7.3720 -3.4408 3.2843 14 1 7.8731 -2.9995 4.1332 15 6 7.2221 -4.8185 3.2060 16 7 7.6903 -5.5870 4.1667 17 14 6.3487 -5.5812 1.7416 18 1 4.8954 -5.6829 2.0300 19 1 6.5570 -4.7301 0.5426 20 1 6.8990 -6.9369 1.4880 21 6 7.2839 2.2562 -0.3951 22 6 8.8062 2.1770 -0.2634 23 6 9.3488 3.5294 0.2027 24 6 8.7373 3.8840 1.5597 25 6 7.2150 3.9632 1.4280 26 1 6.9528 4.7305 0.6996 27 6 6.6034 4.3172 2.7850 28 1 -1.0502 -0.0003 -0.0003 29 1 3.0094 -0.2272 -1.0021 30 1 3.0097 -0.7529 0.6985 31 1 2.7919 1.6069 1.4281 32 1 2.7917 2.1326 -0.2724 33 1 4.9857 1.1083 -0.4766 34 1 4.7169 2.9756 1.7887 35 1 4.8892 3.4347 0.0776 36 1 7.4365 1.8295 2.7823 37 1 6.7492 -0.6228 3.6042 38 1 8.3055 -0.7440 2.7491 39 1 7.5820 -6.5496 4.1139 40 1 6.8970 1.2928 -0.7274 41 1 7.0220 3.0237 -1.1234 42 1 9.2417 1.9240 -1.2301 43 1 9.0685 1.4097 0.4649 44 1 9.0865 4.2968 -0.5257 45 1 10.4333 3.4732 0.2961 46 1 9.1235 4.8477 1.8915 47 1 8.9996 3.1168 2.2880 48 1 6.8658 3.5496 3.5131 49 1 6.9900 5.2807 3.1175 50 1 5.5189 4.3732 2.6913 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318743913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:37 Heat of formation + Delta-G solvation = 20.811825 kcal Electronic energy + Delta-G solvation = -28571.669544 eV Core-core repulsion = 24919.674103 eV Total energy + Delta-G solvation = -3651.995441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.77521 -37.65688 -36.45469 -34.08578 -33.27066 -32.55566 -32.36734 -31.02984 -29.00842 -28.43595 -26.49836 -25.53054 -24.89723 -22.73069 -21.67410 -21.05471 -20.59633 -18.81469 -18.01879 -17.79806 -16.56509 -16.23340 -15.49578 -15.30811 -14.93208 -14.88563 -14.72376 -14.35507 -14.06150 -13.91654 -13.81665 -13.43849 -13.24553 -13.10247 -12.91217 -12.72369 -12.57979 -12.23203 -12.09043 -11.87881 -11.72468 -11.62561 -11.56245 -11.36694 -11.19368 -11.06831 -10.95995 -10.67362 -10.45749 -10.25826 -10.19993 -9.99653 -9.97832 -9.79387 -8.95127 -8.93314 -8.69902 -8.38698 -7.71313 -6.79689 -6.22940 -3.91901 2.85053 2.91298 2.92652 3.36751 3.39311 3.45407 3.53955 3.82433 4.11341 4.38350 4.47291 4.52441 4.55674 4.77965 4.87571 4.94272 5.01924 5.14926 5.16571 5.17272 5.27786 5.29065 5.33190 5.35210 5.42661 5.48365 5.58252 5.60632 5.62224 5.64748 5.78441 5.84385 5.86327 5.93488 5.95977 6.03224 6.08289 6.09170 6.11796 6.18439 6.20663 6.24176 6.35203 6.41149 6.92379 7.22507 7.65358 7.74050 7.98501 8.01147 8.48430 8.95913 9.23980 10.86664 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008272 B = 0.004421 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3384.297697 B = 6331.367632 C = 8794.673402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.170 4.170 3 C -0.013 4.013 4 C 0.064 3.936 5 N -0.648 5.648 6 C 0.051 3.949 7 C 0.195 3.805 8 N -0.723 5.723 9 C 0.533 3.467 10 O -0.476 6.476 11 C -0.122 4.122 12 S -0.137 6.137 13 C -0.520 4.520 14 H 0.085 0.915 15 C 0.095 3.905 16 N -0.884 5.884 17 Si 0.857 3.143 18 H -0.268 1.268 19 H -0.235 1.235 20 H -0.277 1.277 21 C -0.137 4.137 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.113 4.113 25 C -0.091 4.091 26 H 0.079 0.921 27 C -0.151 4.151 28 H 0.214 0.786 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.018 0.982 33 H 0.354 0.646 34 H 0.072 0.928 35 H 0.025 0.975 36 H 0.391 0.609 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.269 0.731 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.055 0.945 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.037 22.667 -7.600 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.171 4.171 3 C -0.050 4.050 4 C -0.065 4.065 5 N -0.284 5.284 6 C -0.079 4.079 7 C 0.108 3.892 8 N -0.379 5.379 9 C 0.318 3.682 10 O -0.347 6.347 11 C -0.273 4.273 12 S 0.090 5.910 13 C -0.668 4.668 14 H 0.103 0.897 15 C -0.113 4.113 16 N -0.521 5.521 17 Si 0.682 3.318 18 H -0.193 1.193 19 H -0.159 1.159 20 H -0.202 1.202 21 C -0.176 4.176 22 C -0.152 4.152 23 C -0.156 4.156 24 C -0.150 4.150 25 C -0.110 4.110 26 H 0.097 0.903 27 C -0.209 4.209 28 H 0.231 0.769 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.178 0.822 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.226 0.774 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.074 0.926 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.906 21.674 -8.632 23.654 hybrid contribution 0.113 0.469 0.541 0.725 sum -3.793 22.143 -8.092 23.878 Atomic orbital electron populations 1.24812 0.95892 1.01659 1.02351 1.23303 0.94673 0.99703 0.99413 1.18675 0.83641 0.99149 1.03510 1.21848 0.89795 0.94684 1.00172 1.61138 1.04307 1.25670 1.37295 1.22455 0.94557 0.90748 1.00163 1.20154 0.92699 0.86998 0.89346 1.45881 1.65858 1.05626 1.20546 1.19795 0.78572 0.82332 0.87453 1.90492 1.36520 1.80810 1.26851 1.23262 1.04058 0.98316 1.01616 1.84624 1.77776 0.95855 1.32791 1.22380 1.43126 0.93655 1.07629 0.89670 1.24712 0.94383 0.96081 0.96173 1.69951 1.44699 1.05066 1.32350 0.86727 0.80606 0.79928 0.84497 1.19339 1.15900 1.20197 1.22034 0.95765 1.03876 0.95891 1.21436 0.95376 0.97120 1.01265 1.21539 0.99714 0.97615 0.96719 1.21575 0.94138 1.01456 0.97877 1.21339 0.95714 0.95978 0.97974 0.90254 1.21914 1.01010 1.01386 0.96554 0.76906 0.89787 0.87721 0.91559 0.96383 0.82202 0.90969 0.95662 0.77413 0.89457 0.89434 0.92088 0.88408 0.92343 0.92355 0.91532 0.92402 0.92223 0.92017 0.91606 0.92329 0.92559 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.78 19.25 29.55 0.57 -2.21 16 2 C -0.17 -2.33 13.34 -37.12 -0.50 -2.82 16 3 C -0.01 -0.17 5.96 -29.52 -0.18 -0.35 16 4 C 0.06 0.80 5.63 -3.82 -0.02 0.78 16 5 N -0.65 -8.32 3.09 -113.78 -0.35 -8.67 16 6 C 0.05 0.55 4.53 -3.82 -0.02 0.53 16 7 C 0.20 1.95 0.35 -131.82 -0.05 1.90 16 8 N -0.72 -8.47 3.76 -47.61 -0.18 -8.64 16 9 C 0.53 8.50 6.79 -10.99 -0.07 8.43 16 10 O -0.48 -8.37 9.62 5.56 0.05 -8.32 16 11 C -0.12 -2.30 6.16 36.01 0.22 -2.08 16 12 S -0.14 -3.36 18.55 -107.50 -1.99 -5.35 16 13 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 14 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 15 C 0.09 2.78 5.50 -17.43 -0.10 2.68 16 16 N -0.88 -26.88 13.97 55.49 0.78 -26.11 16 17 Si 0.86 21.84 27.73 -169.99 -4.71 17.13 16 18 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C -0.14 -1.47 4.14 -26.73 -0.11 -1.59 16 22 C -0.11 -1.20 5.76 -26.73 -0.15 -1.35 16 23 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 24 C -0.11 -0.87 5.03 -26.73 -0.13 -1.01 16 25 C -0.09 -0.71 2.01 -90.62 -0.18 -0.89 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 27 C -0.15 -1.09 8.67 37.16 0.32 -0.77 16 28 H 0.21 1.77 7.80 -54.08 -0.42 1.35 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.35 4.77 6.14 -39.29 -0.24 4.53 16 34 H 0.07 0.78 6.31 -51.93 -0.33 0.45 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.39 4.01 6.21 -40.82 -0.25 3.75 16 37 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 38 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 39 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.10 1.31 4.86 -51.92 -0.25 1.06 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.82 7.40 -51.93 -0.38 0.44 16 44 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.55 7.02 -51.93 -0.36 0.18 16 48 H 0.06 0.44 6.72 -51.93 -0.35 0.09 16 49 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 50 H 0.06 0.45 6.38 -51.93 -0.33 0.12 16 LS Contribution 395.94 15.07 5.97 5.97 Total: -1.00 -31.59 395.94 -9.11 -40.69 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -8.42 Total: 7.87 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -0.24 Total: -14.57 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.25 Total: -43.42 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.05 Total: -8.32 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.99 Total: -5.35 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.59 -9.11 -40.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318743913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.505 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds