Wall clock time and date at job start Tue Mar 31 2020 22:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47066 * 197.18029 * 3 2 1 5 5 N 1.46901 * 109.46890 * 180.02562 * 4 3 2 6 6 C 1.46907 * 110.99657 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46719 * 174.01748 * 6 5 4 8 8 N 1.46499 * 109.47351 * 301.87402 * 7 6 5 9 9 C 1.34773 * 119.99765 * 67.13744 * 8 7 6 10 10 O 1.21279 * 120.00546 * 355.82543 * 9 8 7 11 11 C 1.50703 * 120.00012 * 175.83147 * 9 8 7 12 12 S 1.80995 * 109.47430 * 179.97438 * 11 9 8 13 13 C 1.76201 * 100.00305 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99844 * 0.02562 * 13 12 11 15 15 C 1.38799 * 120.00069 * 180.02562 * 13 12 11 16 16 N 1.31632 * 119.99572 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00071 * 359.72420 * 15 13 12 18 18 H 1.48509 * 109.47007 * 270.27609 * 17 15 13 19 19 H 1.48507 * 109.47230 * 30.27390 * 17 15 13 20 20 H 1.48501 * 109.47300 * 150.27763 * 17 15 13 21 21 C 1.52997 * 109.47302 * 61.87931 * 7 6 5 22 22 C 1.52998 * 109.47302 * 179.97438 * 21 7 6 23 23 C 1.52999 * 109.46879 * 299.99517 * 22 21 7 24 24 C 1.53003 * 109.47066 * 60.00224 * 23 22 21 25 25 C 1.52998 * 109.47088 * 299.99648 * 24 23 22 26 26 H 1.08997 * 109.47267 * 300.00521 * 25 24 23 27 27 C 1.52997 * 109.47302 * 179.97438 * 25 24 23 28 28 H 4.44645 * 5.63467 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.47264 * 77.18162 * 3 2 1 30 30 H 1.08998 * 109.47552 * 317.18020 * 3 2 1 31 31 H 1.08995 * 109.47193 * 60.00222 * 4 3 2 32 32 H 1.08998 * 109.46995 * 299.99821 * 4 3 2 33 33 H 1.00896 * 111.00153 * 56.04624 * 5 4 3 34 34 H 1.08997 * 109.46613 * 54.02173 * 6 5 4 35 35 H 1.08993 * 109.47255 * 294.01816 * 6 5 4 36 36 H 0.97003 * 120.00217 * 247.13015 * 8 7 6 37 37 H 1.09004 * 109.46816 * 59.99362 * 11 9 8 38 38 H 1.09002 * 109.47022 * 300.00066 * 11 9 8 39 39 H 0.97007 * 119.99526 * 179.72420 * 16 15 13 40 40 H 1.09008 * 109.46714 * 299.99377 * 21 7 6 41 41 H 1.08997 * 109.47585 * 59.99428 * 21 7 6 42 42 H 1.09002 * 109.46826 * 179.97438 * 22 21 7 43 43 H 1.08996 * 109.47741 * 59.99459 * 22 21 7 44 44 H 1.09008 * 109.47423 * 300.00062 * 23 22 21 45 45 H 1.09002 * 109.47151 * 180.02562 * 23 22 21 46 46 H 1.08998 * 109.46899 * 180.02562 * 24 23 22 47 47 H 1.08996 * 109.47070 * 60.00354 * 24 23 22 48 48 H 1.08996 * 109.47164 * 300.00895 * 27 25 24 49 49 H 1.09008 * 109.46714 * 60.00623 * 27 25 24 50 50 H 1.08999 * 109.47130 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1553 1.3790 0.4261 5 7 4.6243 1.3798 0.4255 6 6 5.1502 2.6906 0.8300 7 6 6.6724 2.6107 0.9618 8 7 7.0244 1.5791 1.9406 9 6 6.7757 0.2821 1.6717 10 8 6.1924 -0.0251 0.6537 11 6 7.2223 -0.7865 2.6359 12 16 6.7448 -2.4119 1.9988 13 6 7.3720 -3.4408 3.2843 14 1 7.8731 -2.9995 4.1332 15 6 7.2221 -4.8185 3.2060 16 7 7.6903 -5.5870 4.1667 17 14 6.3487 -5.5812 1.7416 18 1 4.8954 -5.6829 2.0300 19 1 6.5570 -4.7301 0.5426 20 1 6.8990 -6.9369 1.4880 21 6 7.2839 2.2562 -0.3951 22 6 8.8062 2.1770 -0.2634 23 6 9.3488 3.5294 0.2027 24 6 8.7373 3.8840 1.5597 25 6 7.2150 3.9632 1.4280 26 1 6.9528 4.7305 0.6996 27 6 6.6034 4.3172 2.7850 28 1 -1.0502 -0.0003 -0.0003 29 1 3.0094 -0.2272 -1.0021 30 1 3.0097 -0.7529 0.6985 31 1 2.7919 1.6069 1.4281 32 1 2.7917 2.1326 -0.2724 33 1 4.9857 1.1083 -0.4766 34 1 4.7169 2.9756 1.7887 35 1 4.8892 3.4347 0.0776 36 1 7.4365 1.8295 2.7823 37 1 6.7492 -0.6228 3.6042 38 1 8.3055 -0.7440 2.7491 39 1 7.5820 -6.5496 4.1139 40 1 6.8970 1.2928 -0.7274 41 1 7.0220 3.0237 -1.1234 42 1 9.2417 1.9240 -1.2301 43 1 9.0685 1.4097 0.4649 44 1 9.0865 4.2968 -0.5257 45 1 10.4333 3.4732 0.2961 46 1 9.1235 4.8477 1.8915 47 1 8.9996 3.1168 2.2880 48 1 6.8658 3.5496 3.5131 49 1 6.9900 5.2807 3.1175 50 1 5.5189 4.3732 2.6913 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318743913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:36 Heat of formation + Delta-G solvation = 2.953302 kcal Electronic energy + Delta-G solvation = -28572.443947 eV Core-core repulsion = 24919.674103 eV Total energy + Delta-G solvation = -3652.769844 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.71899 -38.77168 -37.42241 -35.00753 -34.63476 -34.25466 -33.37205 -32.05524 -30.20178 -29.51787 -27.80662 -27.23783 -25.71197 -23.66196 -22.65610 -21.88195 -21.49711 -19.80403 -19.78511 -18.94830 -17.82898 -17.25381 -17.03068 -16.52826 -16.41492 -15.86336 -15.74784 -15.61838 -15.10433 -14.93614 -14.92528 -14.70770 -14.51288 -14.32793 -14.11842 -13.74770 -13.55015 -13.29023 -13.25188 -13.01466 -12.92220 -12.76437 -12.67968 -12.56385 -12.42925 -12.28377 -12.21942 -11.84004 -11.73621 -11.38348 -11.19647 -11.13655 -11.02872 -10.95441 -10.84950 -10.42700 -10.15757 -9.76160 -8.87083 -8.70167 -8.48293 -6.14709 1.08378 1.33177 1.49842 1.66319 1.86346 1.91133 2.09754 2.27360 2.53861 2.82821 2.90425 3.21522 3.69475 3.78620 3.83566 3.90475 4.14572 4.18938 4.21019 4.29392 4.32753 4.37600 4.48985 4.53012 4.59168 4.59375 4.60985 4.66455 4.71120 4.75708 4.90844 4.94314 5.03435 5.05354 5.09709 5.16474 5.19944 5.22297 5.25351 5.36308 5.37854 5.49623 5.55142 5.60532 5.73805 5.93316 6.14426 6.29909 6.67132 6.74191 6.89162 6.97635 7.72515 8.64729 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008272 B = 0.004421 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3384.297697 B = 6331.367632 C = 8794.673402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.218 4.218 3 C -0.007 4.007 4 C 0.075 3.925 5 N -0.664 5.664 6 C 0.052 3.948 7 C 0.197 3.803 8 N -0.705 5.705 9 C 0.537 3.463 10 O -0.492 6.492 11 C -0.112 4.112 12 S -0.154 6.154 13 C -0.532 4.532 14 H 0.054 0.946 15 C 0.044 3.956 16 N -0.922 5.922 17 Si 0.917 3.083 18 H -0.265 1.265 19 H -0.232 1.232 20 H -0.262 1.262 21 C -0.134 4.134 22 C -0.114 4.114 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.082 4.082 26 H 0.095 0.905 27 C -0.150 4.150 28 H 0.249 0.751 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.350 0.650 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.401 0.599 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.275 0.725 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.052 0.948 49 H 0.070 0.930 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 25.301 -8.700 27.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.218 4.218 3 C -0.044 4.044 4 C -0.054 4.054 5 N -0.300 5.300 6 C -0.078 4.078 7 C 0.110 3.890 8 N -0.361 5.361 9 C 0.321 3.679 10 O -0.365 6.365 11 C -0.264 4.264 12 S 0.073 5.927 13 C -0.679 4.679 14 H 0.072 0.928 15 C -0.161 4.161 16 N -0.561 5.561 17 Si 0.739 3.261 18 H -0.190 1.190 19 H -0.156 1.156 20 H -0.187 1.187 21 C -0.172 4.172 22 C -0.151 4.151 23 C -0.151 4.151 24 C -0.149 4.149 25 C -0.101 4.101 26 H 0.113 0.887 27 C -0.207 4.207 28 H 0.265 0.735 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.173 0.827 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.237 0.763 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.089 0.911 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.763 24.345 -9.715 26.641 hybrid contribution 0.391 -0.231 0.928 1.033 sum -4.373 24.114 -8.787 26.035 Atomic orbital electron populations 1.25695 0.96751 0.99644 1.00260 1.23572 0.95293 1.01616 1.01352 1.18522 0.84211 0.99012 1.02639 1.21720 0.89633 0.94201 0.99895 1.61074 1.04521 1.27228 1.37175 1.22494 0.94595 0.90112 1.00570 1.20328 0.92592 0.87499 0.88561 1.45663 1.64696 1.04418 1.21277 1.19290 0.78851 0.83158 0.86593 1.90520 1.37440 1.81289 1.27214 1.23290 1.04553 0.96023 1.02495 1.84442 1.77778 0.98814 1.31703 1.22591 1.42682 0.94706 1.07962 0.92801 1.25579 0.95082 0.96608 0.98782 1.70039 1.46087 1.05694 1.34263 0.85836 0.79505 0.79558 0.81244 1.18970 1.15594 1.18679 1.21957 0.95776 1.02925 0.96541 1.21410 0.95327 0.97908 1.00502 1.21507 0.99827 0.96394 0.97386 1.21582 0.93949 1.02151 0.97236 1.21311 0.95672 0.94448 0.98710 0.88722 1.21907 1.00922 1.02006 0.95915 0.73482 0.89827 0.90720 0.92256 0.95236 0.82727 0.90890 0.94065 0.76303 0.89067 0.88779 0.91556 0.91211 0.90675 0.92725 0.93888 0.91113 0.91987 0.90224 0.92411 0.92894 0.91075 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.61 19.25 74.32 1.43 -3.18 16 2 C -0.22 -5.87 13.34 31.13 0.42 -5.45 16 3 C -0.01 -0.19 5.96 28.79 0.17 -0.02 16 4 C 0.07 1.83 5.63 86.30 0.49 2.32 16 5 N -0.66 -16.76 3.09 -513.89 -1.59 -18.34 16 6 C 0.05 1.02 4.53 86.30 0.39 1.41 16 7 C 0.20 3.56 0.35 3.61 0.00 3.56 16 8 N -0.71 -15.78 3.76 -422.92 -1.59 -17.37 16 9 C 0.54 17.07 6.79 87.66 0.60 17.66 16 10 O -0.49 -17.45 9.62 -3.03 -0.03 -17.48 16 11 C -0.11 -4.29 6.16 71.24 0.44 -3.85 16 12 S -0.15 -7.67 18.55 -56.49 -1.05 -8.72 16 13 C -0.53 -31.50 10.04 67.95 0.68 -30.82 16 14 H 0.05 3.41 8.03 -2.91 -0.02 3.39 16 15 C 0.04 2.64 5.50 84.86 0.47 3.11 16 16 N -0.92 -57.31 13.97 21.65 0.30 -57.01 16 17 Si 0.92 45.63 27.73 68.60 1.90 47.53 16 18 H -0.26 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.23 -11.37 6.74 99.48 0.67 -10.70 16 20 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 21 C -0.13 -2.69 4.14 30.59 0.13 -2.56 16 22 C -0.11 -2.26 5.76 30.59 0.18 -2.08 16 23 C -0.11 -1.62 5.92 30.59 0.18 -1.44 16 24 C -0.11 -1.40 5.03 30.59 0.15 -1.24 16 25 C -0.08 -1.03 2.01 -10.79 -0.02 -1.05 16 26 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 27 C -0.15 -1.72 8.67 71.98 0.62 -1.10 16 28 H 0.25 3.30 7.80 -4.41 -0.03 3.26 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.35 9.40 6.14 -89.70 -0.55 8.85 16 34 H 0.07 1.43 6.31 -2.39 -0.02 1.42 16 35 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.40 7.65 6.21 -92.71 -0.58 7.07 16 37 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 38 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 39 H 0.28 15.82 8.31 -92.70 -0.77 15.05 16 40 H 0.07 1.85 4.86 -2.38 -0.01 1.84 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.04 1.05 7.40 -2.39 -0.02 1.03 16 44 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 46 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 0.83 7.02 -2.39 -0.02 0.81 16 48 H 0.05 0.67 6.72 -2.39 -0.02 0.65 16 49 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 50 H 0.06 0.71 6.38 -2.39 -0.02 0.69 16 Total: -1.00 -69.98 395.94 4.04 -65.94 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.23 Total: 30.18 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 6.32 Total: -24.73 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -2.87 Total: -92.72 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.03 Total: -17.48 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.90 Total: 47.53 kcal Atomic # 16 Polarization: -7.67 SS G_CDS: -1.05 Total: -8.72 kcal Total: -69.98 4.04 -65.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318743913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.893 kcal (2) G-P(sol) polarization free energy of solvation -69.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds