Wall clock time and date at job start Tue Mar 31 2020 22:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47304 * 2 1 4 4 C 1.53000 * 109.47266 * 239.99638 * 2 1 3 5 5 C 1.53003 * 109.46973 * 65.00129 * 4 2 1 6 6 C 1.50696 * 109.47344 * 179.97438 * 5 4 2 7 7 C 1.38241 * 119.97504 * 269.72846 * 6 5 4 8 8 C 1.38206 * 120.02704 * 179.72636 * 7 6 5 9 9 C 1.38464 * 119.97049 * 0.56747 * 8 7 6 10 10 F 1.35095 * 120.02187 * 179.68568 * 9 8 7 11 11 C 1.38454 * 119.94785 * 359.70335 * 9 8 7 12 12 C 1.38200 * 119.97669 * 0.02562 * 11 9 8 13 13 C 1.50702 * 109.47292 * 119.99914 * 2 1 3 14 14 O 1.21281 * 120.00051 * 119.99870 * 13 2 1 15 15 N 1.34779 * 119.99840 * 300.00191 * 13 2 1 16 16 C 1.46494 * 119.99921 * 179.97438 * 15 13 2 17 17 C 1.53003 * 109.47283 * 179.97438 * 16 15 13 18 18 H 1.08999 * 109.47269 * 305.00317 * 17 16 15 19 19 O 1.42903 * 109.46459 * 65.00211 * 17 16 15 20 20 C 1.53001 * 109.47376 * 185.00021 * 17 16 15 21 21 N 1.46497 * 109.46900 * 180.02562 * 20 17 16 22 22 C 1.36940 * 119.99699 * 180.02562 * 21 20 17 23 23 H 1.08003 * 120.00008 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99902 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00041 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99798 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47251 * 60.00226 * 26 24 22 28 28 H 1.48512 * 109.46986 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47305 * 299.99901 * 26 24 22 30 30 H 1.08999 * 109.47035 * 300.00400 * 1 2 3 31 31 H 1.08999 * 109.47158 * 60.00023 * 1 2 3 32 32 H 1.09000 * 109.46779 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47228 * 184.99763 * 4 2 1 34 34 H 1.09000 * 109.47287 * 305.00581 * 4 2 1 35 35 H 1.09007 * 109.47190 * 300.00457 * 5 4 2 36 36 H 1.09008 * 109.47504 * 59.99881 * 5 4 2 37 37 H 1.08004 * 119.98889 * 359.97438 * 7 6 5 38 38 H 1.07999 * 120.01242 * 180.25046 * 8 7 6 39 39 H 1.07999 * 120.01478 * 179.97438 * 11 9 8 40 40 H 1.08004 * 119.98830 * 180.02562 * 12 11 9 41 41 H 0.96999 * 119.99691 * 0.02562 * 15 13 2 42 42 H 1.09005 * 109.47040 * 60.00167 * 16 15 13 43 43 H 1.08999 * 109.47079 * 299.99869 * 16 15 13 44 44 H 0.96700 * 114.00311 * 60.00313 * 19 17 16 45 45 H 1.08999 * 109.47164 * 300.00361 * 20 17 16 46 46 H 1.08997 * 109.47124 * 60.00063 * 20 17 16 47 47 H 0.96996 * 120.00310 * 359.97438 * 21 20 17 48 48 H 0.97001 * 119.99921 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6353 0.0688 -2.4953 6 6 2.1382 -0.6412 -3.7257 7 6 3.3894 -0.3431 -4.2323 8 6 3.8539 -0.9977 -5.3574 9 6 3.0608 -1.9440 -5.9840 10 9 3.5113 -2.5800 -7.0875 11 6 1.8056 -2.2378 -5.4789 12 6 1.3454 -1.5859 -4.3505 13 6 2.0324 -0.7104 1.2305 14 8 2.7297 -1.6965 1.1192 15 7 1.7068 -0.2499 2.4546 16 6 2.1946 -0.9408 3.6507 17 6 1.6853 -0.2191 4.9000 18 1 1.9743 0.8310 4.8563 19 8 0.2610 -0.3190 4.9602 20 6 2.2949 -0.8645 6.1461 21 7 1.8066 -0.1738 7.3422 22 6 2.2198 -0.5789 8.5833 23 1 2.9060 -1.4073 8.6803 24 6 1.7576 0.0758 9.7167 25 7 0.9226 1.0864 9.5984 26 14 2.3218 -0.4764 11.4097 27 1 3.7990 -0.3556 11.5030 28 1 1.6884 0.3785 12.4458 29 1 1.9261 -1.8911 11.6263 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1264 -0.7995 -1.2055 34 1 1.6054 -1.7198 -1.2951 35 1 0.5489 0.1471 -2.5390 36 1 2.0699 1.0675 -2.4495 37 1 4.0058 0.3988 -3.7464 38 1 4.8331 -0.7675 -5.7506 39 1 1.1859 -2.9754 -5.9670 40 1 0.3665 -1.8152 -3.9561 41 1 1.1488 0.5385 2.5435 42 1 3.2847 -0.9411 3.6509 43 1 1.8309 -1.9683 3.6506 44 1 -0.0682 -1.2273 5.0012 45 1 2.0059 -1.9145 6.1898 46 1 3.3813 -0.7883 6.1001 47 1 1.1913 0.5709 7.2551 48 1 0.5999 1.5441 10.3904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320227201.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:52 Heat of formation + Delta-G solvation = -120.506025 kcal Electronic energy + Delta-G solvation = -27606.831819 eV Core-core repulsion = 23382.495201 eV Total energy + Delta-G solvation = -4224.336619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.25970 -40.21315 -39.53934 -37.73838 -35.85903 -34.44200 -34.01113 -32.43776 -31.56721 -31.28855 -29.23874 -28.22782 -25.90466 -25.10734 -23.49294 -23.11294 -22.20692 -21.45302 -21.15801 -19.84477 -18.09059 -17.51376 -17.15055 -16.84366 -16.45028 -16.09706 -16.03351 -15.94084 -15.41677 -15.18094 -14.56669 -14.47668 -14.44011 -14.10540 -13.95100 -13.72088 -13.60141 -13.51922 -13.10061 -13.00060 -12.82534 -12.57316 -12.33280 -12.10723 -11.98829 -11.83754 -11.77084 -11.45528 -11.19604 -10.97733 -10.97328 -10.82117 -10.64344 -10.22193 -9.98236 -9.80643 -9.54451 -9.48560 -9.11668 -8.93590 -8.91767 -6.96132 -5.78016 -3.07839 0.70643 0.79650 2.56575 3.03261 3.18792 3.42907 3.47249 3.48359 3.86056 4.20399 4.25203 4.43559 4.46295 4.53460 4.56748 4.68204 4.70087 4.78780 4.82567 4.85480 5.05629 5.08815 5.15206 5.23064 5.26329 5.44179 5.48977 5.50228 5.53747 5.59058 5.62058 5.67254 5.69958 5.78700 5.80615 5.88674 5.93017 6.01050 6.13666 6.17780 6.38057 6.46848 6.48560 6.64877 7.44091 7.66130 7.91053 8.15932 8.40144 9.51833 10.08221 10.44223 11.44160 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.037220 B = 0.001417 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.107464 B =19755.215414 C =20095.923046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.094 4.094 5 C -0.083 4.083 6 C -0.087 4.087 7 C -0.088 4.088 8 C -0.151 4.151 9 C 0.089 3.911 10 F -0.142 7.142 11 C -0.152 4.152 12 C -0.088 4.088 13 C 0.513 3.487 14 O -0.544 6.544 15 N -0.721 5.721 16 C 0.089 3.911 17 C 0.089 3.911 18 H 0.104 0.896 19 O -0.552 6.552 20 C 0.126 3.874 21 N -0.725 5.725 22 C -0.246 4.246 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.930 5.930 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.286 1.286 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.404 0.596 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.374 0.626 45 H 0.023 0.977 46 H 0.028 0.972 47 H 0.389 0.611 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.309 -1.229 -32.205 32.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 H 0.116 0.884 4 C -0.132 4.132 5 C -0.120 4.120 6 C -0.088 4.088 7 C -0.106 4.106 8 C -0.170 4.170 9 C 0.070 3.930 10 F -0.121 7.121 11 C -0.170 4.170 12 C -0.106 4.106 13 C 0.299 3.701 14 O -0.422 6.422 15 N -0.372 5.372 16 C -0.035 4.035 17 C 0.030 3.970 18 H 0.122 0.878 19 O -0.357 6.357 20 C -0.002 4.002 21 N -0.370 5.370 22 C -0.377 4.377 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.739 3.261 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.239 0.761 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.221 0.779 45 H 0.040 0.960 46 H 0.046 0.954 47 H 0.223 0.777 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.333 -1.397 -32.186 32.218 hybrid contribution 0.031 -0.458 0.851 0.967 sum 0.364 -1.855 -31.334 31.391 Atomic orbital electron populations 1.21852 0.92750 1.02963 1.02928 1.21332 0.97759 1.00941 0.93187 0.88391 1.21383 1.02157 0.98979 0.90684 1.20721 1.01611 0.98598 0.91085 1.19973 0.94480 0.97322 0.96994 1.20963 0.95419 0.99200 0.94992 1.21168 1.00705 0.97546 0.97588 1.17749 0.94182 0.95287 0.85746 1.91498 1.89312 1.80565 1.50723 1.21160 0.95155 1.02337 0.98379 1.20950 1.00059 0.95214 0.94357 1.20642 0.80078 0.84647 0.84694 1.90707 1.38080 1.26454 1.86909 1.45966 1.53538 1.32301 1.05431 1.22103 1.00183 0.96801 0.84443 1.22382 0.81490 1.00841 0.92333 0.87849 1.86569 1.19938 1.32588 1.96618 1.21194 0.96846 0.95328 0.86877 1.42214 1.55691 1.39004 1.00114 1.19180 1.22257 1.12572 0.83670 0.91272 1.24754 0.99805 0.98326 0.97869 1.69667 1.35876 1.23700 1.28543 0.86255 0.78035 0.77730 0.84061 1.21237 1.21625 1.21244 0.91740 0.91217 0.91978 0.90800 0.90980 0.90293 0.90566 0.84923 0.84775 0.84784 0.84935 0.76067 0.90526 0.91143 0.77938 0.95971 0.95409 0.77651 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.84 37.16 0.33 -0.56 16 2 C -0.11 -0.82 2.72 -91.77 -0.25 -1.07 16 3 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.09 -0.71 4.01 -26.73 -0.11 -0.81 16 5 C -0.08 -0.44 5.10 -27.88 -0.14 -0.58 16 6 C -0.09 -0.57 5.13 -104.62 -0.54 -1.11 16 7 C -0.09 -0.58 9.70 -39.59 -0.38 -0.96 16 8 C -0.15 -1.09 10.03 -39.51 -0.40 -1.49 16 9 C 0.09 0.74 7.30 -39.42 -0.29 0.45 16 10 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 11 C -0.15 -1.08 10.03 -39.52 -0.40 -1.48 16 12 C -0.09 -0.57 9.70 -39.59 -0.38 -0.95 16 13 C 0.51 5.85 7.15 -10.98 -0.08 5.77 16 14 O -0.54 -8.40 15.92 5.56 0.09 -8.31 16 15 N -0.72 -7.79 5.40 -60.29 -0.33 -8.11 16 16 C 0.09 1.13 5.31 -4.04 -0.02 1.11 16 17 C 0.09 1.33 3.09 -26.73 -0.08 1.24 16 18 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 19 O -0.55 -8.46 13.03 -35.23 -0.46 -8.92 16 20 C 0.13 2.41 5.92 -4.04 -0.02 2.39 16 21 N -0.73 -18.16 5.49 -59.91 -0.33 -18.49 16 22 C -0.25 -6.87 9.99 -15.06 -0.15 -7.02 16 23 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 26 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 30 H 0.06 0.38 7.56 -51.93 -0.39 -0.01 16 31 H 0.07 0.30 6.56 -51.93 -0.34 -0.04 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.67 7.95 -51.93 -0.41 0.26 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.33 6.51 -51.93 -0.34 -0.01 16 36 H 0.08 0.33 8.08 -51.92 -0.42 -0.09 16 37 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.40 3.72 7.89 -40.82 -0.32 3.40 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.37 4.81 9.05 45.56 0.41 5.23 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.39 10.42 7.54 -40.82 -0.31 10.11 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -34.21 405.23 -8.93 -43.14 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.74 Total: 11.45 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -3.01 Total: -5.48 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.07 Total: -54.00 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.37 Total: -17.23 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.21 -8.93 -43.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320227201.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.367 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds