Wall clock time and date at job start Tue Mar 31 2020 22:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47304 * 2 1 4 4 C 1.53000 * 109.47266 * 239.99638 * 2 1 3 5 5 C 1.53003 * 109.46973 * 65.00129 * 4 2 1 6 6 C 1.50696 * 109.47344 * 179.97438 * 5 4 2 7 7 C 1.38241 * 119.97504 * 269.72846 * 6 5 4 8 8 C 1.38206 * 120.02704 * 179.72636 * 7 6 5 9 9 C 1.38464 * 119.97049 * 0.56747 * 8 7 6 10 10 F 1.35095 * 120.02187 * 179.68568 * 9 8 7 11 11 C 1.38454 * 119.94785 * 359.70335 * 9 8 7 12 12 C 1.38200 * 119.97669 * 0.02562 * 11 9 8 13 13 C 1.50702 * 109.47292 * 119.99914 * 2 1 3 14 14 O 1.21281 * 120.00051 * 119.99870 * 13 2 1 15 15 N 1.34779 * 119.99840 * 300.00191 * 13 2 1 16 16 C 1.46494 * 119.99921 * 179.97438 * 15 13 2 17 17 C 1.53003 * 109.47283 * 179.97438 * 16 15 13 18 18 H 1.08999 * 109.47269 * 305.00317 * 17 16 15 19 19 O 1.42903 * 109.46459 * 65.00211 * 17 16 15 20 20 C 1.53001 * 109.47376 * 185.00021 * 17 16 15 21 21 N 1.46497 * 109.46900 * 180.02562 * 20 17 16 22 22 C 1.36940 * 119.99699 * 180.02562 * 21 20 17 23 23 H 1.08003 * 120.00008 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99902 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00041 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99798 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47251 * 60.00226 * 26 24 22 28 28 H 1.48512 * 109.46986 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47305 * 299.99901 * 26 24 22 30 30 H 1.08999 * 109.47035 * 300.00400 * 1 2 3 31 31 H 1.08999 * 109.47158 * 60.00023 * 1 2 3 32 32 H 1.09000 * 109.46779 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47228 * 184.99763 * 4 2 1 34 34 H 1.09000 * 109.47287 * 305.00581 * 4 2 1 35 35 H 1.09007 * 109.47190 * 300.00457 * 5 4 2 36 36 H 1.09008 * 109.47504 * 59.99881 * 5 4 2 37 37 H 1.08004 * 119.98889 * 359.97438 * 7 6 5 38 38 H 1.07999 * 120.01242 * 180.25046 * 8 7 6 39 39 H 1.07999 * 120.01478 * 179.97438 * 11 9 8 40 40 H 1.08004 * 119.98830 * 180.02562 * 12 11 9 41 41 H 0.96999 * 119.99691 * 0.02562 * 15 13 2 42 42 H 1.09005 * 109.47040 * 60.00167 * 16 15 13 43 43 H 1.08999 * 109.47079 * 299.99869 * 16 15 13 44 44 H 0.96700 * 114.00311 * 60.00313 * 19 17 16 45 45 H 1.08999 * 109.47164 * 300.00361 * 20 17 16 46 46 H 1.08997 * 109.47124 * 60.00063 * 20 17 16 47 47 H 0.96996 * 120.00310 * 359.97438 * 21 20 17 48 48 H 0.97001 * 119.99921 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6353 0.0688 -2.4953 6 6 2.1382 -0.6412 -3.7257 7 6 3.3894 -0.3431 -4.2323 8 6 3.8539 -0.9977 -5.3574 9 6 3.0608 -1.9440 -5.9840 10 9 3.5113 -2.5800 -7.0875 11 6 1.8056 -2.2378 -5.4789 12 6 1.3454 -1.5859 -4.3505 13 6 2.0324 -0.7104 1.2305 14 8 2.7297 -1.6965 1.1192 15 7 1.7068 -0.2499 2.4546 16 6 2.1946 -0.9408 3.6507 17 6 1.6853 -0.2191 4.9000 18 1 1.9743 0.8310 4.8563 19 8 0.2610 -0.3190 4.9602 20 6 2.2949 -0.8645 6.1461 21 7 1.8066 -0.1738 7.3422 22 6 2.2198 -0.5789 8.5833 23 1 2.9060 -1.4073 8.6803 24 6 1.7576 0.0758 9.7167 25 7 0.9226 1.0864 9.5984 26 14 2.3218 -0.4764 11.4097 27 1 3.7990 -0.3556 11.5030 28 1 1.6884 0.3785 12.4458 29 1 1.9261 -1.8911 11.6263 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1264 -0.7995 -1.2055 34 1 1.6054 -1.7198 -1.2951 35 1 0.5489 0.1471 -2.5390 36 1 2.0699 1.0675 -2.4495 37 1 4.0058 0.3988 -3.7464 38 1 4.8331 -0.7675 -5.7506 39 1 1.1859 -2.9754 -5.9670 40 1 0.3665 -1.8152 -3.9561 41 1 1.1488 0.5385 2.5435 42 1 3.2847 -0.9411 3.6509 43 1 1.8309 -1.9683 3.6506 44 1 -0.0682 -1.2273 5.0012 45 1 2.0059 -1.9145 6.1898 46 1 3.3813 -0.7883 6.1001 47 1 1.1913 0.5709 7.2551 48 1 0.5999 1.5441 10.3904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320227201.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:51 Heat of formation + Delta-G solvation = -144.416877 kcal Electronic energy + Delta-G solvation = -27607.868672 eV Core-core repulsion = 23382.495201 eV Total energy + Delta-G solvation = -4225.373471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.89766 -41.06775 -40.10353 -38.98547 -36.51331 -36.05637 -35.29341 -33.24749 -32.91523 -32.05704 -30.58028 -28.86889 -27.18114 -25.99494 -24.57520 -23.98687 -23.16815 -22.75221 -21.78548 -20.66994 -19.23585 -18.65750 -18.31007 -17.62659 -17.38188 -17.20385 -16.74084 -16.58764 -16.44247 -16.23488 -16.08360 -15.46652 -15.29436 -15.04392 -14.88527 -14.69071 -14.43390 -14.30889 -14.20223 -14.08882 -13.79899 -13.56022 -13.34338 -13.16122 -12.94790 -12.72148 -12.57434 -12.45094 -12.36926 -12.20151 -11.97228 -11.95741 -11.80195 -11.72665 -11.48664 -11.10219 -10.96378 -10.65336 -10.09334 -10.04272 -9.47786 -9.01019 -7.94705 -5.24231 0.16886 0.30053 1.48039 1.50808 1.57079 1.68141 2.17120 2.56514 2.63786 3.32419 3.36255 3.46935 3.61734 3.68829 3.77358 3.79376 3.97937 4.02070 4.05722 4.18321 4.21369 4.32341 4.37667 4.39760 4.54044 4.58471 4.61155 4.64746 4.75863 4.82737 4.92997 4.97067 5.03712 5.05620 5.12385 5.16279 5.19302 5.21439 5.30552 5.37189 5.43562 5.47746 5.49769 5.65848 5.97210 6.26223 6.57716 6.79376 7.28072 7.33763 8.08962 8.32648 9.28052 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.037220 B = 0.001417 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.107464 B =19755.215414 C =20095.923046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 H 0.123 0.877 4 C -0.089 4.089 5 C -0.074 4.074 6 C -0.093 4.093 7 C -0.094 4.094 8 C -0.160 4.160 9 C 0.063 3.937 10 F -0.154 7.154 11 C -0.159 4.159 12 C -0.093 4.093 13 C 0.509 3.491 14 O -0.589 6.589 15 N -0.713 5.713 16 C 0.102 3.898 17 C 0.109 3.891 18 H 0.103 0.897 19 O -0.562 6.562 20 C 0.121 3.879 21 N -0.738 5.738 22 C -0.252 4.252 23 H 0.075 0.925 24 C -0.072 4.072 25 N -0.966 5.966 26 Si 0.974 3.026 27 H -0.278 1.278 28 H -0.294 1.294 29 H -0.278 1.278 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.152 0.848 41 H 0.415 0.585 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.384 0.616 45 H 0.028 0.972 46 H 0.032 0.968 47 H 0.377 0.623 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.729 -0.695 -32.734 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.141 0.859 4 C -0.127 4.127 5 C -0.111 4.111 6 C -0.093 4.093 7 C -0.112 4.112 8 C -0.179 4.179 9 C 0.044 3.956 10 F -0.133 7.133 11 C -0.178 4.178 12 C -0.111 4.111 13 C 0.297 3.703 14 O -0.470 6.470 15 N -0.365 5.365 16 C -0.024 4.024 17 C 0.050 3.950 18 H 0.120 0.880 19 O -0.368 6.368 20 C -0.007 4.007 21 N -0.382 5.382 22 C -0.384 4.384 23 H 0.093 0.907 24 C -0.265 4.265 25 N -0.616 5.616 26 Si 0.803 3.197 27 H -0.204 1.204 28 H -0.221 1.221 29 H -0.204 1.204 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.170 0.830 41 H 0.252 0.748 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.233 0.767 45 H 0.046 0.954 46 H 0.050 0.950 47 H 0.210 0.790 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.083 -0.879 -32.746 32.758 hybrid contribution 0.181 -0.672 0.970 1.194 sum 0.098 -1.551 -31.776 31.814 Atomic orbital electron populations 1.21868 0.91257 1.02733 1.04340 1.21367 0.98768 1.01437 0.90731 0.85917 1.21295 1.00776 0.98681 0.91916 1.20700 1.02762 0.98644 0.89034 1.20222 0.94461 0.97262 0.97358 1.21235 0.95799 0.99418 0.94754 1.21378 1.01172 0.97423 0.97899 1.18065 0.95152 0.96264 0.86070 1.91461 1.89530 1.80922 1.51387 1.21381 0.94965 1.02693 0.98762 1.21234 1.00931 0.94889 0.93996 1.21412 0.79100 0.84111 0.85639 1.90691 1.40171 1.28587 1.87512 1.45884 1.53361 1.32383 1.04836 1.21807 0.99774 0.96513 0.84270 1.22080 0.81153 1.00505 0.91302 0.87966 1.86548 1.19956 1.33739 1.96556 1.21407 0.97111 0.95400 0.86737 1.42380 1.55577 1.39104 1.01115 1.19610 1.21565 1.12183 0.85060 0.90711 1.25573 1.00518 0.98826 1.01590 1.69823 1.37541 1.25152 1.29102 0.85212 0.77748 0.77346 0.79424 1.20393 1.22057 1.20420 0.91447 0.88724 0.93046 0.92768 0.92632 0.88515 0.88932 0.83251 0.83828 0.83723 0.83048 0.74837 0.90989 0.91340 0.76701 0.95362 0.95037 0.79003 0.93971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.84 71.98 0.64 -0.66 16 2 C -0.10 -1.26 2.72 -11.54 -0.03 -1.29 16 3 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.09 -1.18 4.01 30.60 0.12 -1.06 16 5 C -0.07 -0.57 5.10 29.85 0.15 -0.42 16 6 C -0.09 -1.05 5.13 -19.86 -0.10 -1.15 16 7 C -0.09 -1.12 9.70 22.26 0.22 -0.91 16 8 C -0.16 -2.26 10.03 22.32 0.22 -2.04 16 9 C 0.06 1.06 7.30 22.38 0.16 1.22 16 10 F -0.15 -2.96 17.27 44.97 0.78 -2.18 16 11 C -0.16 -2.20 10.03 22.31 0.22 -1.97 16 12 C -0.09 -1.06 9.70 22.26 0.22 -0.85 16 13 C 0.51 10.92 7.15 87.66 0.63 11.55 16 14 O -0.59 -18.02 15.92 -3.03 -0.05 -18.07 16 15 N -0.71 -14.21 5.40 -463.06 -2.50 -16.71 16 16 C 0.10 2.45 5.31 86.38 0.46 2.91 16 17 C 0.11 3.12 3.09 30.60 0.09 3.22 16 18 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 19 O -0.56 -16.47 13.03 -148.98 -1.94 -18.41 16 20 C 0.12 4.52 5.92 86.38 0.51 5.03 16 21 N -0.74 -36.84 5.49 -343.46 -1.89 -38.73 16 22 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 23 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 25 N -0.97 -58.90 13.06 21.65 0.28 -58.61 16 26 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 29 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 30 H 0.07 0.59 7.56 -2.39 -0.02 0.57 16 31 H 0.09 0.41 6.56 -2.39 -0.02 0.40 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.94 7.95 -2.39 -0.02 0.92 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 0.43 6.51 -2.38 -0.02 0.42 16 36 H 0.09 0.46 8.08 -2.38 -0.02 0.44 16 37 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 38 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 39 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.41 6.67 7.89 -92.71 -0.73 5.94 16 42 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.38 9.39 9.05 -74.06 -0.67 8.72 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.38 20.33 7.54 -92.71 -0.70 19.63 16 48 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -74.10 405.23 0.42 -73.68 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: -1.11 Total: 34.51 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 4.82 Total: -3.28 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -4.10 Total: -114.05 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.99 Total: -36.48 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -74.10 0.42 -73.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320227201.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.739 kcal (2) G-P(sol) polarization free energy of solvation -74.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds