Wall clock time and date at job start Tue Mar 31 2020 22:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 C 1.53002 * 109.47454 * 119.99897 * 2 1 3 5 5 C 1.53004 * 109.46991 * 295.00305 * 4 2 1 6 6 C 1.50699 * 109.46871 * 179.97438 * 5 4 2 7 7 C 1.38244 * 119.97537 * 269.72569 * 6 5 4 8 8 C 1.38193 * 120.02657 * 179.72789 * 7 6 5 9 9 C 1.38462 * 119.97236 * 0.56484 * 8 7 6 10 10 F 1.35107 * 120.02252 * 179.68315 * 9 8 7 11 11 C 1.38457 * 119.95040 * 359.70763 * 9 8 7 12 12 C 1.38200 * 119.97234 * 359.97438 * 11 9 8 13 13 C 1.50696 * 109.46999 * 240.00243 * 2 1 3 14 14 O 1.21284 * 120.00109 * 239.99682 * 13 2 1 15 15 N 1.34777 * 120.00137 * 59.99467 * 13 2 1 16 16 C 1.46506 * 119.99873 * 179.97438 * 15 13 2 17 17 C 1.52999 * 109.46684 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.47362 * 60.00788 * 17 16 15 19 19 O 1.42900 * 109.47616 * 300.00054 * 17 16 15 20 20 C 1.53006 * 109.46997 * 180.02562 * 17 16 15 21 21 N 1.46502 * 109.47419 * 185.00471 * 20 17 16 22 22 C 1.36931 * 119.99771 * 180.02562 * 21 20 17 23 23 H 1.07996 * 120.00553 * 359.97438 * 22 21 20 24 24 C 1.38814 * 119.99661 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00025 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00099 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47136 * 59.99863 * 26 24 22 28 28 H 1.48504 * 109.47133 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47161 * 299.99824 * 26 24 22 30 30 H 1.09001 * 109.47142 * 59.99947 * 1 2 3 31 31 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46838 * 299.99496 * 1 2 3 33 33 H 1.09004 * 109.46573 * 54.99772 * 4 2 1 34 34 H 1.08994 * 109.47265 * 174.99929 * 4 2 1 35 35 H 1.09000 * 109.47063 * 299.99946 * 5 4 2 36 36 H 1.09002 * 109.47235 * 60.00008 * 5 4 2 37 37 H 1.08006 * 119.98537 * 359.97438 * 7 6 5 38 38 H 1.08003 * 120.01388 * 180.25262 * 8 7 6 39 39 H 1.07999 * 120.01251 * 179.97438 * 11 9 8 40 40 H 1.08001 * 119.98518 * 179.97438 * 12 11 9 41 41 H 0.96995 * 120.00018 * 0.27749 * 15 13 2 42 42 H 1.09000 * 109.47212 * 300.00355 * 16 15 13 43 43 H 1.09001 * 109.46577 * 60.00430 * 16 15 13 44 44 H 0.96700 * 113.99696 * 300.00309 * 19 17 16 45 45 H 1.09005 * 109.46600 * 305.00222 * 20 17 16 46 46 H 1.09001 * 109.47164 * 64.99887 * 20 17 16 47 47 H 0.97003 * 119.99363 * 359.97438 * 21 20 17 48 48 H 0.97001 * 119.99883 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 6 2.1372 -0.6417 3.7258 7 6 1.3415 -1.5823 4.3530 8 6 1.8029 -2.2387 5.4781 9 6 3.0580 -1.9456 5.9840 10 9 3.5076 -2.5822 7.0877 11 6 3.8518 -0.9994 5.3583 12 6 3.3909 -0.3490 4.2294 13 6 2.0323 -0.7103 -1.2305 14 8 2.7296 -1.6964 -1.1193 15 7 1.7066 -0.2499 -2.4546 16 6 2.1954 -0.9402 -3.6508 17 6 1.6857 -0.2187 -4.8999 18 1 2.0490 0.8090 -4.8996 19 8 0.2567 -0.2187 -4.9004 20 6 2.1957 -0.9399 -6.1493 21 7 1.8085 -0.1830 -7.3424 22 6 2.1572 -0.6392 -8.5855 23 1 2.7179 -1.5567 -8.6865 24 6 1.7899 0.0777 -9.7161 25 7 1.1061 1.1956 -9.5931 26 14 2.2661 -0.5441 -11.4119 27 1 1.6732 -1.8879 -11.6309 28 1 1.7579 0.3948 -12.4441 29 1 3.7452 -0.6338 -11.5089 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6054 -1.7198 1.2951 34 1 3.1264 -0.7994 1.2056 35 1 2.0699 1.0675 2.4494 36 1 0.5490 0.1471 2.5390 37 1 0.3604 -1.8070 3.9612 38 1 1.1827 -2.9764 5.9656 39 1 4.8308 -0.7697 5.7523 40 1 4.0098 0.3895 3.7414 41 1 1.1523 0.5410 -2.5435 42 1 3.2854 -0.9398 -3.6506 43 1 1.8325 -1.9680 -3.6509 44 1 -0.1365 -1.1022 -4.9008 45 1 3.2820 -1.0184 -6.1054 46 1 1.7608 -1.9384 -6.1954 47 1 1.3046 0.6408 -7.2517 48 1 0.8491 1.6963 -10.3831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320227203.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:00 Heat of formation + Delta-G solvation = -120.584488 kcal Electronic energy + Delta-G solvation = -27609.819038 eV Core-core repulsion = 23385.479017 eV Total energy + Delta-G solvation = -4224.340021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.25667 -40.21277 -39.53972 -37.74636 -35.85719 -34.43230 -34.02600 -32.43623 -31.56771 -31.30106 -29.23759 -28.22784 -25.90394 -25.10711 -23.49177 -23.11194 -22.19947 -21.45842 -21.16332 -19.84842 -18.09010 -17.51431 -17.15834 -16.84376 -16.45180 -16.08047 -16.03691 -15.94097 -15.41160 -15.21142 -14.56401 -14.47714 -14.43041 -14.10697 -13.95183 -13.72150 -13.60184 -13.52015 -13.09288 -12.99541 -12.82936 -12.59473 -12.32669 -12.10658 -11.98752 -11.83847 -11.77372 -11.45486 -11.19455 -10.98573 -10.97275 -10.81993 -10.64910 -10.23121 -9.97454 -9.80997 -9.54457 -9.49660 -9.11385 -8.93555 -8.92022 -6.96501 -5.78315 -3.08101 0.70660 0.79706 2.56761 3.03218 3.18796 3.42840 3.47173 3.48296 3.86048 4.20489 4.25208 4.43506 4.46314 4.53832 4.56814 4.68188 4.69922 4.78869 4.82598 4.85477 5.05673 5.08901 5.15110 5.22259 5.26428 5.44225 5.49039 5.50420 5.53630 5.59981 5.62150 5.67297 5.70010 5.78831 5.80656 5.88691 5.92737 6.01142 6.13713 6.17088 6.38220 6.46868 6.48604 6.64363 7.44763 7.65988 7.89262 8.16319 8.39720 9.51407 10.07602 10.43383 11.43918 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.037106 B = 0.001417 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.422593 B =19750.249648 C =20079.020788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.094 4.094 5 C -0.083 4.083 6 C -0.087 4.087 7 C -0.088 4.088 8 C -0.151 4.151 9 C 0.089 3.911 10 F -0.142 7.142 11 C -0.151 4.151 12 C -0.088 4.088 13 C 0.513 3.487 14 O -0.544 6.544 15 N -0.720 5.720 16 C 0.089 3.911 17 C 0.089 3.911 18 H 0.105 0.895 19 O -0.553 6.553 20 C 0.127 3.873 21 N -0.725 5.725 22 C -0.246 4.246 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.930 5.930 26 Si 0.909 3.091 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.286 1.286 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.405 0.595 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.373 0.627 45 H 0.028 0.972 46 H 0.023 0.977 47 H 0.388 0.612 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 -1.423 32.212 32.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 H 0.116 0.884 4 C -0.132 4.132 5 C -0.120 4.120 6 C -0.088 4.088 7 C -0.106 4.106 8 C -0.170 4.170 9 C 0.070 3.930 10 F -0.121 7.121 11 C -0.170 4.170 12 C -0.106 4.106 13 C 0.299 3.701 14 O -0.422 6.422 15 N -0.372 5.372 16 C -0.036 4.036 17 C 0.029 3.971 18 H 0.122 0.878 19 O -0.358 6.358 20 C -0.002 4.002 21 N -0.370 5.370 22 C -0.377 4.377 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.739 3.261 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.240 0.760 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.220 0.780 45 H 0.046 0.954 46 H 0.041 0.959 47 H 0.223 0.777 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.019 -1.607 32.170 32.210 hybrid contribution -0.024 -0.469 -0.838 0.961 sum -0.043 -2.075 31.331 31.400 Atomic orbital electron populations 1.21853 0.92751 1.02952 1.02933 1.21331 0.97762 1.00940 0.93182 0.88395 1.21384 1.02157 0.98978 0.90685 1.20720 1.01615 0.98595 0.91083 1.19975 0.94430 0.97366 0.96998 1.20949 1.00046 0.95195 0.94395 1.21161 0.95142 1.02303 0.98421 1.17752 0.94213 0.95256 0.85747 1.91502 1.89351 1.80532 1.50717 1.21165 1.00719 0.97591 0.97530 1.20962 0.95429 0.99226 0.94952 1.20640 0.80070 0.84663 0.84694 1.90708 1.38064 1.26484 1.86913 1.45950 1.53691 1.32185 1.05390 1.22092 1.00193 0.96820 0.84461 1.22398 0.81387 1.00945 0.92329 0.87760 1.86571 1.18667 1.33688 1.96843 1.21205 0.97557 0.94583 0.86840 1.42222 1.66851 1.27761 1.00190 1.19177 1.29213 1.05635 0.83645 0.91257 1.24755 1.00774 0.97346 0.97882 1.69665 1.43056 1.16450 1.28652 0.86253 0.78013 0.77732 0.84072 1.21243 1.21623 1.21230 0.91724 0.91987 0.91225 0.90983 0.90801 0.90559 0.90299 0.84937 0.84783 0.84775 0.84921 0.76000 0.90531 0.91145 0.78005 0.95396 0.95941 0.77740 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.85 37.16 0.33 -0.55 16 2 C -0.11 -0.82 2.72 -91.77 -0.25 -1.07 16 3 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.09 -0.71 4.01 -26.73 -0.11 -0.81 16 5 C -0.08 -0.44 5.10 -27.88 -0.14 -0.58 16 6 C -0.09 -0.57 5.13 -104.62 -0.54 -1.11 16 7 C -0.09 -0.57 9.70 -39.60 -0.38 -0.95 16 8 C -0.15 -1.08 10.03 -39.52 -0.40 -1.48 16 9 C 0.09 0.74 7.30 -39.42 -0.29 0.45 16 10 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 11 C -0.15 -1.09 10.03 -39.51 -0.40 -1.49 16 12 C -0.09 -0.58 9.70 -39.59 -0.38 -0.96 16 13 C 0.51 5.85 7.15 -10.99 -0.08 5.77 16 14 O -0.54 -8.40 15.92 5.55 0.09 -8.31 16 15 N -0.72 -7.78 5.34 -60.29 -0.32 -8.11 16 16 C 0.09 1.13 5.34 -4.04 -0.02 1.10 16 17 C 0.09 1.32 3.09 -26.73 -0.08 1.24 16 18 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 19 O -0.55 -8.33 13.03 -35.23 -0.46 -8.79 16 20 C 0.13 2.42 5.90 -4.04 -0.02 2.40 16 21 N -0.73 -18.17 5.55 -59.90 -0.33 -18.50 16 22 C -0.25 -6.87 9.99 -15.06 -0.15 -7.02 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 26 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 H 0.06 0.38 7.57 -51.93 -0.39 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.30 6.56 -51.93 -0.34 -0.04 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.67 7.95 -51.93 -0.41 0.26 16 35 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 36 H 0.08 0.33 6.51 -51.93 -0.34 -0.01 16 37 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 38 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 41 H 0.40 3.75 7.78 -40.82 -0.32 3.43 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.37 4.67 9.04 45.56 0.41 5.08 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.39 10.39 7.67 -40.82 -0.31 10.08 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 405.25 15.07 6.11 6.11 Total: -1.00 -34.19 405.25 -8.93 -43.12 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -6.74 Total: 11.35 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -3.01 Total: -5.48 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.07 Total: -54.01 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.37 Total: -17.10 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.19 -8.93 -43.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320227203.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.466 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds