Wall clock time and date at job start Tue Mar 31 2020 22:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 C 1.53002 * 109.47454 * 119.99897 * 2 1 3 5 5 C 1.53004 * 109.46991 * 295.00305 * 4 2 1 6 6 C 1.50699 * 109.46871 * 179.97438 * 5 4 2 7 7 C 1.38244 * 119.97537 * 269.72569 * 6 5 4 8 8 C 1.38193 * 120.02657 * 179.72789 * 7 6 5 9 9 C 1.38462 * 119.97236 * 0.56484 * 8 7 6 10 10 F 1.35107 * 120.02252 * 179.68315 * 9 8 7 11 11 C 1.38457 * 119.95040 * 359.70763 * 9 8 7 12 12 C 1.38200 * 119.97234 * 359.97438 * 11 9 8 13 13 C 1.50696 * 109.46999 * 240.00243 * 2 1 3 14 14 O 1.21284 * 120.00109 * 239.99682 * 13 2 1 15 15 N 1.34777 * 120.00137 * 59.99467 * 13 2 1 16 16 C 1.46506 * 119.99873 * 179.97438 * 15 13 2 17 17 C 1.52999 * 109.46684 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.47362 * 60.00788 * 17 16 15 19 19 O 1.42900 * 109.47616 * 300.00054 * 17 16 15 20 20 C 1.53006 * 109.46997 * 180.02562 * 17 16 15 21 21 N 1.46502 * 109.47419 * 185.00471 * 20 17 16 22 22 C 1.36931 * 119.99771 * 180.02562 * 21 20 17 23 23 H 1.07996 * 120.00553 * 359.97438 * 22 21 20 24 24 C 1.38814 * 119.99661 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00025 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00099 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47136 * 59.99863 * 26 24 22 28 28 H 1.48504 * 109.47133 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47161 * 299.99824 * 26 24 22 30 30 H 1.09001 * 109.47142 * 59.99947 * 1 2 3 31 31 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46838 * 299.99496 * 1 2 3 33 33 H 1.09004 * 109.46573 * 54.99772 * 4 2 1 34 34 H 1.08994 * 109.47265 * 174.99929 * 4 2 1 35 35 H 1.09000 * 109.47063 * 299.99946 * 5 4 2 36 36 H 1.09002 * 109.47235 * 60.00008 * 5 4 2 37 37 H 1.08006 * 119.98537 * 359.97438 * 7 6 5 38 38 H 1.08003 * 120.01388 * 180.25262 * 8 7 6 39 39 H 1.07999 * 120.01251 * 179.97438 * 11 9 8 40 40 H 1.08001 * 119.98518 * 179.97438 * 12 11 9 41 41 H 0.96995 * 120.00018 * 0.27749 * 15 13 2 42 42 H 1.09000 * 109.47212 * 300.00355 * 16 15 13 43 43 H 1.09001 * 109.46577 * 60.00430 * 16 15 13 44 44 H 0.96700 * 113.99696 * 300.00309 * 19 17 16 45 45 H 1.09005 * 109.46600 * 305.00222 * 20 17 16 46 46 H 1.09001 * 109.47164 * 64.99887 * 20 17 16 47 47 H 0.97003 * 119.99363 * 359.97438 * 21 20 17 48 48 H 0.97001 * 119.99883 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 6 2.1372 -0.6417 3.7258 7 6 1.3415 -1.5823 4.3530 8 6 1.8029 -2.2387 5.4781 9 6 3.0580 -1.9456 5.9840 10 9 3.5076 -2.5822 7.0877 11 6 3.8518 -0.9994 5.3583 12 6 3.3909 -0.3490 4.2294 13 6 2.0323 -0.7103 -1.2305 14 8 2.7296 -1.6964 -1.1193 15 7 1.7066 -0.2499 -2.4546 16 6 2.1954 -0.9402 -3.6508 17 6 1.6857 -0.2187 -4.8999 18 1 2.0490 0.8090 -4.8996 19 8 0.2567 -0.2187 -4.9004 20 6 2.1957 -0.9399 -6.1493 21 7 1.8085 -0.1830 -7.3424 22 6 2.1572 -0.6392 -8.5855 23 1 2.7179 -1.5567 -8.6865 24 6 1.7899 0.0777 -9.7161 25 7 1.1061 1.1956 -9.5931 26 14 2.2661 -0.5441 -11.4119 27 1 1.6732 -1.8879 -11.6309 28 1 1.7579 0.3948 -12.4441 29 1 3.7452 -0.6338 -11.5089 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6054 -1.7198 1.2951 34 1 3.1264 -0.7994 1.2056 35 1 2.0699 1.0675 2.4494 36 1 0.5490 0.1471 2.5390 37 1 0.3604 -1.8070 3.9612 38 1 1.1827 -2.9764 5.9656 39 1 4.8308 -0.7697 5.7523 40 1 4.0098 0.3895 3.7414 41 1 1.1523 0.5410 -2.5435 42 1 3.2854 -0.9398 -3.6506 43 1 1.8325 -1.9680 -3.6509 44 1 -0.1365 -1.1022 -4.9008 45 1 3.2820 -1.0184 -6.1054 46 1 1.7608 -1.9384 -6.1954 47 1 1.3046 0.6408 -7.2517 48 1 0.8491 1.6963 -10.3831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320227203.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:59 Heat of formation + Delta-G solvation = -144.472225 kcal Electronic energy + Delta-G solvation = -27610.854888 eV Core-core repulsion = 23385.479017 eV Total energy + Delta-G solvation = -4225.375871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.89480 -41.06802 -40.10418 -38.98555 -36.51161 -36.07334 -35.27551 -33.25766 -32.91550 -32.05769 -30.58007 -28.86829 -27.18079 -25.99432 -24.57281 -23.98604 -23.17299 -22.75240 -21.78559 -20.67171 -19.23759 -18.65726 -18.31174 -17.62814 -17.38169 -17.19207 -16.75156 -16.58792 -16.44361 -16.22871 -16.09536 -15.45814 -15.28337 -15.04955 -14.88073 -14.69670 -14.43295 -14.30556 -14.21019 -14.10180 -13.78788 -13.55605 -13.34467 -13.16135 -12.95581 -12.72098 -12.57310 -12.44920 -12.37021 -12.20303 -11.97559 -11.95709 -11.80677 -11.72451 -11.48621 -11.09828 -10.96521 -10.65997 -10.09129 -10.04291 -9.47772 -9.01417 -7.95010 -5.24527 0.16884 0.30094 1.47966 1.50755 1.57032 1.68291 2.16892 2.56430 2.63793 3.32391 3.36084 3.48286 3.60700 3.68946 3.77607 3.79456 3.97938 4.01086 4.05202 4.18408 4.21951 4.32406 4.37685 4.39500 4.53982 4.58511 4.61048 4.64925 4.75861 4.82873 4.93241 4.97129 5.03863 5.05835 5.12448 5.16348 5.19335 5.21533 5.30560 5.37085 5.43567 5.47681 5.49762 5.65880 5.97215 6.25945 6.58174 6.79631 7.28361 7.33348 8.08294 8.31809 9.27806 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.037106 B = 0.001417 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.422593 B =19750.249648 C =20079.020788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 H 0.123 0.877 4 C -0.089 4.089 5 C -0.074 4.074 6 C -0.093 4.093 7 C -0.093 4.093 8 C -0.159 4.159 9 C 0.063 3.937 10 F -0.154 7.154 11 C -0.160 4.160 12 C -0.094 4.094 13 C 0.509 3.491 14 O -0.589 6.589 15 N -0.712 5.712 16 C 0.101 3.899 17 C 0.110 3.890 18 H 0.101 0.899 19 O -0.561 6.561 20 C 0.122 3.878 21 N -0.739 5.739 22 C -0.252 4.252 23 H 0.075 0.925 24 C -0.073 4.073 25 N -0.966 5.966 26 Si 0.974 3.026 27 H -0.278 1.278 28 H -0.294 1.294 29 H -0.278 1.278 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.415 0.585 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.385 0.615 45 H 0.032 0.968 46 H 0.029 0.971 47 H 0.377 0.623 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.248 -0.984 32.740 32.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.140 0.860 4 C -0.127 4.127 5 C -0.111 4.111 6 C -0.093 4.093 7 C -0.110 4.110 8 C -0.178 4.178 9 C 0.044 3.956 10 F -0.133 7.133 11 C -0.179 4.179 12 C -0.112 4.112 13 C 0.297 3.703 14 O -0.470 6.470 15 N -0.364 5.364 16 C -0.024 4.024 17 C 0.050 3.950 18 H 0.119 0.881 19 O -0.368 6.368 20 C -0.006 4.006 21 N -0.382 5.382 22 C -0.384 4.384 23 H 0.093 0.907 24 C -0.265 4.265 25 N -0.617 5.617 26 Si 0.803 3.197 27 H -0.204 1.204 28 H -0.221 1.221 29 H -0.204 1.204 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.170 0.830 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.252 0.748 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.233 0.767 45 H 0.049 0.951 46 H 0.047 0.953 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.575 -1.187 32.728 32.755 hybrid contribution 0.162 -0.656 -0.956 1.170 sum -0.414 -1.842 31.773 31.829 Atomic orbital electron populations 1.21867 0.91229 1.02747 1.04340 1.21366 0.98798 1.01414 0.90730 0.85961 1.21295 1.00769 0.98687 0.91915 1.20699 1.02772 0.98633 0.89034 1.20224 0.94411 0.97306 0.97361 1.21234 1.00926 0.94853 0.94026 1.21383 0.94948 1.02662 0.98801 1.18068 0.95186 0.96230 0.86071 1.91464 1.89569 1.80890 1.51381 1.21373 1.01182 0.97471 0.97844 1.21232 0.95822 0.99441 0.94721 1.21409 0.79092 0.84125 0.85636 1.90692 1.40152 1.28617 1.87513 1.45869 1.53500 1.32259 1.04796 1.21796 0.99749 0.96563 0.84288 1.22071 0.81313 1.00314 0.91313 0.88121 1.86550 1.18579 1.34880 1.96760 1.21419 0.97781 0.94677 0.86715 1.42394 1.66753 1.27866 1.01184 1.19608 1.28264 1.05507 0.85036 0.90690 1.25575 1.01496 0.97824 1.01621 1.69821 1.44779 1.17833 1.29221 0.85209 0.77908 0.77183 0.79417 1.20408 1.22051 1.20390 0.91430 0.93014 0.88742 0.92616 0.92783 0.88945 0.88507 0.83028 0.83713 0.83835 0.83271 0.74802 0.91059 0.91279 0.76659 0.95050 0.95289 0.79092 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.85 71.98 0.64 -0.65 16 2 C -0.10 -1.26 2.72 -11.54 -0.03 -1.29 16 3 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 4 C -0.09 -1.18 4.01 30.60 0.12 -1.06 16 5 C -0.07 -0.57 5.10 29.85 0.15 -0.42 16 6 C -0.09 -1.05 5.13 -19.86 -0.10 -1.15 16 7 C -0.09 -1.06 9.70 22.26 0.22 -0.84 16 8 C -0.16 -2.19 10.03 22.31 0.22 -1.97 16 9 C 0.06 1.06 7.30 22.38 0.16 1.22 16 10 F -0.15 -2.96 17.27 44.97 0.78 -2.18 16 11 C -0.16 -2.26 10.03 22.31 0.22 -2.04 16 12 C -0.09 -1.13 9.70 22.26 0.22 -0.91 16 13 C 0.51 10.92 7.15 87.66 0.63 11.55 16 14 O -0.59 -18.02 15.92 -3.04 -0.05 -18.07 16 15 N -0.71 -14.21 5.34 -463.05 -2.47 -16.68 16 16 C 0.10 2.45 5.34 86.38 0.46 2.91 16 17 C 0.11 3.13 3.09 30.60 0.09 3.23 16 18 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 19 O -0.56 -16.13 13.03 -148.98 -1.94 -18.07 16 20 C 0.12 4.54 5.90 86.38 0.51 5.05 16 21 N -0.74 -36.89 5.55 -343.44 -1.91 -38.79 16 22 C -0.25 -14.02 9.99 84.03 0.84 -13.19 16 23 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 24 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 25 N -0.97 -58.93 13.06 21.65 0.28 -58.64 16 26 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 28 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 29 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 30 H 0.07 0.59 7.57 -2.39 -0.02 0.57 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.41 6.56 -2.39 -0.02 0.39 16 33 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.05 0.94 7.95 -2.39 -0.02 0.92 16 35 H 0.09 0.46 8.09 -2.39 -0.02 0.44 16 36 H 0.10 0.43 6.51 -2.39 -0.02 0.42 16 37 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 41 H 0.41 6.73 7.78 -92.71 -0.72 6.01 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 44 H 0.38 9.04 9.04 -74.06 -0.67 8.37 16 45 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.38 20.29 7.67 -92.71 -0.71 19.58 16 48 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -74.07 405.25 0.43 -73.65 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: -1.11 Total: 34.24 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 4.82 Total: -3.26 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -4.09 Total: -114.12 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.99 Total: -36.14 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -74.07 0.43 -73.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320227203.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.826 kcal (2) G-P(sol) polarization free energy of solvation -74.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds