Wall clock time and date at job start Tue Mar 31 2020 22:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53000 * 109.47341 * 295.00521 * 4 2 1 6 6 C 1.50690 * 109.47247 * 180.02562 * 5 4 2 7 7 C 1.38246 * 119.97312 * 269.72368 * 6 5 4 8 8 C 1.38209 * 120.02459 * 179.72371 * 7 6 5 9 9 C 1.38456 * 119.97106 * 0.57357 * 8 7 6 10 10 F 1.35099 * 120.02519 * 179.68267 * 9 8 7 11 11 C 1.38459 * 119.95306 * 359.69611 * 9 8 7 12 12 C 1.38198 * 119.97170 * 0.02562 * 11 9 8 13 13 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 14 14 O 1.21288 * 120.00038 * 239.99878 * 13 2 1 15 15 N 1.34777 * 120.00369 * 59.99719 * 13 2 1 16 16 C 1.46505 * 120.00115 * 180.02562 * 15 13 2 17 17 C 1.53002 * 109.46958 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.46608 * 304.99612 * 17 16 15 19 19 O 1.42895 * 109.47283 * 64.99500 * 17 16 15 20 20 C 1.52994 * 109.46757 * 185.00172 * 17 16 15 21 21 N 1.46507 * 109.47044 * 179.97438 * 20 17 16 22 22 C 1.36934 * 120.00063 * 179.97438 * 21 20 17 23 23 H 1.08003 * 120.00330 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99879 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00014 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99963 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47344 * 89.99312 * 26 24 22 28 28 H 1.48495 * 109.47243 * 209.99507 * 26 24 22 29 29 H 1.48502 * 109.47034 * 329.99457 * 26 24 22 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 34 34 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 35 35 H 1.09002 * 109.46818 * 300.00038 * 5 4 2 36 36 H 1.08994 * 109.47281 * 59.99487 * 5 4 2 37 37 H 1.07993 * 119.98760 * 359.97438 * 7 6 5 38 38 H 1.07999 * 120.00929 * 180.25034 * 8 7 6 39 39 H 1.07998 * 120.01482 * 179.97438 * 11 9 8 40 40 H 1.07999 * 119.98433 * 179.97438 * 12 11 9 41 41 H 0.96995 * 119.99691 * 359.97438 * 15 13 2 42 42 H 1.09002 * 109.47068 * 300.00006 * 16 15 13 43 43 H 1.09001 * 109.46919 * 59.99811 * 16 15 13 44 44 H 0.96698 * 113.99412 * 60.00262 * 19 17 16 45 45 H 1.09003 * 109.47105 * 299.99136 * 20 17 16 46 46 H 1.09001 * 109.47894 * 59.99845 * 20 17 16 47 47 H 0.97004 * 119.99668 * 0.02562 * 21 20 17 48 48 H 0.97001 * 119.99708 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6352 0.0688 2.4953 6 6 2.1381 -0.6413 3.7256 7 6 1.3432 -1.5823 4.3534 8 6 1.8056 -2.2383 5.4785 9 6 3.0607 -1.9442 5.9838 10 9 3.5112 -2.5802 7.0873 11 6 3.8536 -0.9975 5.3576 12 6 3.3915 -0.3470 4.2293 13 6 2.0324 -0.7103 -1.2305 14 8 2.7297 -1.6964 -1.1193 15 7 1.7068 -0.2498 -2.4546 16 6 2.1948 -0.9406 -3.6508 17 6 1.6854 -0.2188 -4.9000 18 1 0.5991 -0.1400 -4.8564 19 8 2.2560 1.0899 -4.9600 20 6 2.0896 -1.0092 -6.1461 21 7 1.6013 -0.3185 -7.3423 22 6 1.8457 -0.8428 -8.5834 23 1 2.3980 -1.7658 -8.6805 24 6 1.3835 -0.1880 -9.7168 25 7 0.7100 0.9366 -9.5984 26 14 1.7162 -0.9037 -11.4098 27 1 0.6075 -1.8164 -11.7881 28 1 1.8118 0.1967 -12.4023 29 1 2.9937 -1.6603 -11.3851 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6055 -1.7199 1.2951 34 1 3.1264 -0.7995 1.2055 35 1 2.0698 1.0674 2.4495 36 1 0.5490 0.1470 2.5389 37 1 0.3623 -1.8077 3.9620 38 1 1.1861 -2.9763 5.9663 39 1 4.8326 -0.7670 5.7511 40 1 4.0096 0.3917 3.7409 41 1 1.1489 0.5386 -2.5435 42 1 3.2848 -0.9410 -3.6510 43 1 1.8311 -1.9682 -3.6507 44 1 3.2221 1.0961 -5.0009 45 1 3.1759 -1.0881 -6.1897 46 1 1.6543 -2.0075 -6.1004 47 1 1.1056 0.5108 -7.2550 48 1 0.3867 1.3939 -10.3904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320227204.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:04 Heat of formation + Delta-G solvation = -120.618099 kcal Electronic energy + Delta-G solvation = -27597.149783 eV Core-core repulsion = 23372.808304 eV Total energy + Delta-G solvation = -4224.341478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.25915 -40.21380 -39.53962 -37.74136 -35.86071 -34.44291 -34.01425 -32.43935 -31.56799 -31.29062 -29.23959 -28.23534 -25.90737 -25.11111 -23.49310 -23.11405 -22.21052 -21.45485 -21.15845 -19.84842 -18.09085 -17.51164 -17.15606 -16.84571 -16.46021 -16.10228 -15.97652 -15.93487 -15.48703 -15.21007 -14.51281 -14.48313 -14.43746 -14.07072 -13.95644 -13.74557 -13.67002 -13.49011 -13.07775 -12.99783 -12.85481 -12.55314 -12.35834 -12.11716 -11.97672 -11.83908 -11.77931 -11.45648 -11.19973 -10.97729 -10.97520 -10.83991 -10.64617 -10.19291 -9.98218 -9.81021 -9.54495 -9.48687 -9.11819 -8.93638 -8.92434 -6.96255 -5.78379 -3.08104 0.70590 0.79605 2.56577 3.03052 3.18696 3.42168 3.47345 3.49075 3.86022 4.20252 4.25147 4.43514 4.46233 4.53270 4.56698 4.67585 4.69793 4.78548 4.82508 4.85073 5.05272 5.08493 5.16105 5.22240 5.25753 5.44030 5.48455 5.49488 5.53517 5.58838 5.61379 5.66776 5.69847 5.78918 5.80787 5.87105 5.93123 6.00915 6.13576 6.17501 6.37924 6.46798 6.48359 6.64683 7.44022 7.66435 7.90983 8.15855 8.39766 9.51578 10.07945 10.43950 11.43887 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.037438 B = 0.001413 C = 0.001397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.714917 B =19812.637084 C =20042.456680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.094 4.094 5 C -0.083 4.083 6 C -0.087 4.087 7 C -0.088 4.088 8 C -0.151 4.151 9 C 0.089 3.911 10 F -0.142 7.142 11 C -0.151 4.151 12 C -0.088 4.088 13 C 0.513 3.487 14 O -0.544 6.544 15 N -0.721 5.721 16 C 0.089 3.911 17 C 0.089 3.911 18 H 0.104 0.896 19 O -0.552 6.552 20 C 0.126 3.874 21 N -0.725 5.725 22 C -0.245 4.245 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.908 3.092 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.404 0.596 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.374 0.626 45 H 0.023 0.977 46 H 0.028 0.972 47 H 0.389 0.611 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 -0.365 32.236 32.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 H 0.117 0.883 4 C -0.132 4.132 5 C -0.120 4.120 6 C -0.088 4.088 7 C -0.106 4.106 8 C -0.170 4.170 9 C 0.070 3.930 10 F -0.121 7.121 11 C -0.170 4.170 12 C -0.106 4.106 13 C 0.299 3.701 14 O -0.422 6.422 15 N -0.372 5.372 16 C -0.035 4.035 17 C 0.030 3.970 18 H 0.122 0.878 19 O -0.357 6.357 20 C -0.003 4.003 21 N -0.370 5.370 22 C -0.376 4.376 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.239 0.761 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.221 0.779 45 H 0.040 0.960 46 H 0.046 0.954 47 H 0.223 0.777 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.934 -1.030 32.220 32.250 hybrid contribution 0.450 -0.141 -0.855 0.977 sum 1.385 -1.171 31.365 31.418 Atomic orbital electron populations 1.21856 0.92819 1.02956 1.02898 1.21330 0.97710 1.00984 0.93190 0.88344 1.21383 1.02160 0.98981 0.90679 1.20716 1.01607 0.98604 0.91085 1.19974 0.94442 0.97362 0.96992 1.20952 1.00044 0.95196 0.94390 1.21163 0.95141 1.02299 0.98424 1.17749 0.94205 0.95261 0.85748 1.91500 1.89315 1.80560 1.50725 1.21165 1.00719 0.97586 0.97538 1.20961 0.95425 0.99224 0.94960 1.20640 0.80110 0.84615 0.84694 1.90709 1.38080 1.26453 1.86914 1.45966 1.53667 1.32169 1.05431 1.22106 0.99872 0.97115 0.84438 1.22379 0.98896 0.83437 0.92335 0.87850 1.86569 1.25332 1.27203 1.96618 1.21198 0.97169 0.95013 0.86876 1.42226 1.66649 1.28032 1.00129 1.19225 1.29522 1.05194 0.83653 0.91215 1.24757 1.00810 0.97353 0.97875 1.69679 1.41961 1.17708 1.28425 0.86180 0.77803 0.77836 0.84289 1.21676 1.21711 1.20755 0.91942 0.91161 0.91864 0.90974 0.90801 0.90559 0.90298 0.84938 0.84782 0.84775 0.84922 0.76068 0.91139 0.90523 0.77929 0.95961 0.95395 0.77654 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.85 37.16 0.33 -0.55 16 2 C -0.11 -0.82 2.72 -91.77 -0.25 -1.07 16 3 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.09 -0.70 4.01 -26.73 -0.11 -0.81 16 5 C -0.08 -0.44 5.10 -27.89 -0.14 -0.58 16 6 C -0.09 -0.57 5.13 -104.62 -0.54 -1.11 16 7 C -0.09 -0.57 9.70 -39.59 -0.38 -0.95 16 8 C -0.15 -1.08 10.03 -39.51 -0.40 -1.48 16 9 C 0.09 0.74 7.30 -39.42 -0.29 0.45 16 10 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 11 C -0.15 -1.09 10.03 -39.51 -0.40 -1.49 16 12 C -0.09 -0.58 9.70 -39.59 -0.38 -0.96 16 13 C 0.51 5.85 7.15 -10.99 -0.08 5.77 16 14 O -0.54 -8.40 15.92 5.55 0.09 -8.31 16 15 N -0.72 -7.79 5.40 -60.29 -0.33 -8.12 16 16 C 0.09 1.13 5.31 -4.04 -0.02 1.11 16 17 C 0.09 1.33 3.09 -26.73 -0.08 1.24 16 18 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 19 O -0.55 -8.49 13.03 -35.23 -0.46 -8.94 16 20 C 0.13 2.41 5.92 -4.04 -0.02 2.38 16 21 N -0.73 -18.16 5.49 -59.90 -0.33 -18.49 16 22 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 23 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 26 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.30 6.56 -51.93 -0.34 -0.05 16 32 H 0.06 0.36 7.56 -51.93 -0.39 -0.03 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.67 7.96 -51.93 -0.41 0.26 16 35 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 36 H 0.08 0.33 6.51 -51.93 -0.34 -0.01 16 37 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.40 3.72 7.89 -40.82 -0.32 3.40 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.37 4.82 9.04 45.56 0.41 5.23 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.39 10.42 7.54 -40.82 -0.31 10.11 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -34.26 405.23 -8.93 -43.19 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.74 Total: 11.39 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -3.01 Total: -5.45 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.07 Total: -54.00 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.37 Total: -17.25 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.26 -8.93 -43.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320227204.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.424 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds