Wall clock time and date at job start Tue Mar 31 2020 22:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53000 * 109.47341 * 295.00521 * 4 2 1 6 6 C 1.50690 * 109.47247 * 180.02562 * 5 4 2 7 7 C 1.38246 * 119.97312 * 269.72368 * 6 5 4 8 8 C 1.38209 * 120.02459 * 179.72371 * 7 6 5 9 9 C 1.38456 * 119.97106 * 0.57357 * 8 7 6 10 10 F 1.35099 * 120.02519 * 179.68267 * 9 8 7 11 11 C 1.38459 * 119.95306 * 359.69611 * 9 8 7 12 12 C 1.38198 * 119.97170 * 0.02562 * 11 9 8 13 13 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 14 14 O 1.21288 * 120.00038 * 239.99878 * 13 2 1 15 15 N 1.34777 * 120.00369 * 59.99719 * 13 2 1 16 16 C 1.46505 * 120.00115 * 180.02562 * 15 13 2 17 17 C 1.53002 * 109.46958 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.46608 * 304.99612 * 17 16 15 19 19 O 1.42895 * 109.47283 * 64.99500 * 17 16 15 20 20 C 1.52994 * 109.46757 * 185.00172 * 17 16 15 21 21 N 1.46507 * 109.47044 * 179.97438 * 20 17 16 22 22 C 1.36934 * 120.00063 * 179.97438 * 21 20 17 23 23 H 1.08003 * 120.00330 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99879 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00014 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99963 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47344 * 89.99312 * 26 24 22 28 28 H 1.48495 * 109.47243 * 209.99507 * 26 24 22 29 29 H 1.48502 * 109.47034 * 329.99457 * 26 24 22 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 34 34 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 35 35 H 1.09002 * 109.46818 * 300.00038 * 5 4 2 36 36 H 1.08994 * 109.47281 * 59.99487 * 5 4 2 37 37 H 1.07993 * 119.98760 * 359.97438 * 7 6 5 38 38 H 1.07999 * 120.00929 * 180.25034 * 8 7 6 39 39 H 1.07998 * 120.01482 * 179.97438 * 11 9 8 40 40 H 1.07999 * 119.98433 * 179.97438 * 12 11 9 41 41 H 0.96995 * 119.99691 * 359.97438 * 15 13 2 42 42 H 1.09002 * 109.47068 * 300.00006 * 16 15 13 43 43 H 1.09001 * 109.46919 * 59.99811 * 16 15 13 44 44 H 0.96698 * 113.99412 * 60.00262 * 19 17 16 45 45 H 1.09003 * 109.47105 * 299.99136 * 20 17 16 46 46 H 1.09001 * 109.47894 * 59.99845 * 20 17 16 47 47 H 0.97004 * 119.99668 * 0.02562 * 21 20 17 48 48 H 0.97001 * 119.99708 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6352 0.0688 2.4953 6 6 2.1381 -0.6413 3.7256 7 6 1.3432 -1.5823 4.3534 8 6 1.8056 -2.2383 5.4785 9 6 3.0607 -1.9442 5.9838 10 9 3.5112 -2.5802 7.0873 11 6 3.8536 -0.9975 5.3576 12 6 3.3915 -0.3470 4.2293 13 6 2.0324 -0.7103 -1.2305 14 8 2.7297 -1.6964 -1.1193 15 7 1.7068 -0.2498 -2.4546 16 6 2.1948 -0.9406 -3.6508 17 6 1.6854 -0.2188 -4.9000 18 1 0.5991 -0.1400 -4.8564 19 8 2.2560 1.0899 -4.9600 20 6 2.0896 -1.0092 -6.1461 21 7 1.6013 -0.3185 -7.3423 22 6 1.8457 -0.8428 -8.5834 23 1 2.3980 -1.7658 -8.6805 24 6 1.3835 -0.1880 -9.7168 25 7 0.7100 0.9366 -9.5984 26 14 1.7162 -0.9037 -11.4098 27 1 0.6075 -1.8164 -11.7881 28 1 1.8118 0.1967 -12.4023 29 1 2.9937 -1.6603 -11.3851 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6055 -1.7199 1.2951 34 1 3.1264 -0.7995 1.2055 35 1 2.0698 1.0674 2.4495 36 1 0.5490 0.1470 2.5389 37 1 0.3623 -1.8077 3.9620 38 1 1.1861 -2.9763 5.9663 39 1 4.8326 -0.7670 5.7511 40 1 4.0096 0.3917 3.7409 41 1 1.1489 0.5386 -2.5435 42 1 3.2848 -0.9410 -3.6510 43 1 1.8311 -1.9682 -3.6507 44 1 3.2221 1.0961 -5.0009 45 1 3.1759 -1.0881 -6.1897 46 1 1.6543 -2.0075 -6.1004 47 1 1.1056 0.5108 -7.2550 48 1 0.3867 1.3939 -10.3904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320227204.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:04 Heat of formation + Delta-G solvation = -144.578784 kcal Electronic energy + Delta-G solvation = -27598.188796 eV Core-core repulsion = 23372.808304 eV Total energy + Delta-G solvation = -4225.380492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.89676 -41.06759 -40.10355 -38.98834 -36.51398 -36.05846 -35.29517 -33.24771 -32.91686 -32.05741 -30.58239 -28.87270 -27.18296 -25.99670 -24.57748 -23.98677 -23.16916 -22.75432 -21.78598 -20.67249 -19.23802 -18.65774 -18.31552 -17.62776 -17.38264 -17.16645 -16.74996 -16.59158 -16.45308 -16.29950 -16.05776 -15.46262 -15.24324 -15.07403 -14.88845 -14.67029 -14.44384 -14.33000 -14.25869 -14.00170 -13.82515 -13.56278 -13.36708 -13.14290 -12.95472 -12.75481 -12.57789 -12.44924 -12.37258 -12.16325 -11.96826 -11.95548 -11.80596 -11.72779 -11.48729 -11.10701 -10.97479 -10.65277 -10.09459 -10.04276 -9.47796 -9.01179 -7.95093 -5.24498 0.16873 0.30048 1.48013 1.49443 1.57951 1.68185 2.16910 2.56218 2.63764 3.32421 3.36154 3.47001 3.61602 3.68784 3.77161 3.79227 3.97882 4.02158 4.05576 4.18135 4.21239 4.32256 4.37666 4.39532 4.54004 4.58445 4.61713 4.64142 4.75713 4.82327 4.92894 4.96992 5.03527 5.05200 5.12157 5.16321 5.19309 5.21122 5.30529 5.37167 5.43087 5.47826 5.49711 5.65816 5.97200 6.26050 6.57671 6.79447 7.28032 7.33558 8.08676 8.32355 9.27920 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.037438 B = 0.001413 C = 0.001397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.714917 B =19812.637084 C =20042.456680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 H 0.123 0.877 4 C -0.089 4.089 5 C -0.074 4.074 6 C -0.093 4.093 7 C -0.093 4.093 8 C -0.159 4.159 9 C 0.063 3.937 10 F -0.154 7.154 11 C -0.160 4.160 12 C -0.094 4.094 13 C 0.509 3.491 14 O -0.589 6.589 15 N -0.713 5.713 16 C 0.102 3.898 17 C 0.109 3.891 18 H 0.102 0.898 19 O -0.562 6.562 20 C 0.121 3.879 21 N -0.739 5.739 22 C -0.251 4.251 23 H 0.075 0.925 24 C -0.073 4.073 25 N -0.966 5.966 26 Si 0.974 3.026 27 H -0.286 1.286 28 H -0.295 1.295 29 H -0.270 1.270 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.415 0.585 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.384 0.616 45 H 0.029 0.971 46 H 0.032 0.968 47 H 0.377 0.623 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 0.205 32.769 32.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 H 0.140 0.860 4 C -0.127 4.127 5 C -0.111 4.111 6 C -0.093 4.093 7 C -0.111 4.111 8 C -0.178 4.178 9 C 0.044 3.956 10 F -0.133 7.133 11 C -0.179 4.179 12 C -0.112 4.112 13 C 0.297 3.703 14 O -0.470 6.470 15 N -0.365 5.365 16 C -0.024 4.024 17 C 0.050 3.950 18 H 0.120 0.880 19 O -0.368 6.368 20 C -0.007 4.007 21 N -0.382 5.382 22 C -0.383 4.383 23 H 0.093 0.907 24 C -0.265 4.265 25 N -0.616 5.616 26 Si 0.803 3.197 27 H -0.214 1.214 28 H -0.221 1.221 29 H -0.195 1.195 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.170 0.830 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.252 0.748 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.233 0.767 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.210 0.790 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.583 -0.470 32.784 32.793 hybrid contribution 0.600 -0.353 -0.975 1.198 sum 1.183 -0.823 31.809 31.842 Atomic orbital electron populations 1.21882 0.91281 1.02766 1.04392 1.21362 0.98770 1.01422 0.90732 0.85952 1.21294 1.00780 0.98679 0.91915 1.20695 1.02763 0.98642 0.89035 1.20223 0.94428 0.97298 0.97356 1.21236 1.00921 0.94868 0.94027 1.21384 0.94955 1.02661 0.98808 1.18065 0.95173 0.96240 0.86072 1.91462 1.89532 1.80918 1.51390 1.21374 1.01185 0.97455 0.97847 1.21233 0.95807 0.99436 0.94725 1.21410 0.79134 0.84075 0.85638 1.90693 1.40176 1.28580 1.87516 1.45885 1.53488 1.32254 1.04837 1.21809 0.99665 0.96629 0.84262 1.22076 0.98780 0.82874 0.91310 0.87975 1.86548 1.26469 1.27259 1.96558 1.21411 0.97229 0.95299 0.86729 1.42391 1.66749 1.27912 1.01129 1.19644 1.28480 1.05102 0.85040 0.90691 1.25572 1.01388 0.98005 1.01583 1.69831 1.43590 1.19203 1.29022 0.85141 0.78002 0.76945 0.79649 1.21354 1.22113 1.19505 0.92995 0.88676 0.91413 0.92632 0.92766 0.88939 0.88512 0.83050 0.83728 0.83818 0.83252 0.74841 0.91281 0.91031 0.76675 0.95334 0.95022 0.79005 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.85 71.98 0.64 -0.65 16 2 C -0.10 -1.26 2.72 -11.54 -0.03 -1.29 16 3 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.09 -1.18 4.01 30.59 0.12 -1.06 16 5 C -0.07 -0.57 5.10 29.84 0.15 -0.42 16 6 C -0.09 -1.05 5.13 -19.86 -0.10 -1.15 16 7 C -0.09 -1.06 9.70 22.26 0.22 -0.85 16 8 C -0.16 -2.20 10.03 22.31 0.22 -1.98 16 9 C 0.06 1.06 7.30 22.37 0.16 1.22 16 10 F -0.15 -2.96 17.27 44.97 0.78 -2.18 16 11 C -0.16 -2.25 10.03 22.31 0.22 -2.03 16 12 C -0.09 -1.12 9.70 22.26 0.22 -0.90 16 13 C 0.51 10.92 7.15 87.66 0.63 11.55 16 14 O -0.59 -18.02 15.92 -3.05 -0.05 -18.06 16 15 N -0.71 -14.21 5.40 -463.04 -2.50 -16.71 16 16 C 0.10 2.45 5.31 86.38 0.46 2.91 16 17 C 0.11 3.12 3.09 30.59 0.09 3.21 16 18 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 19 O -0.56 -16.50 13.03 -148.98 -1.94 -18.44 16 20 C 0.12 4.51 5.92 86.38 0.51 5.02 16 21 N -0.74 -36.82 5.49 -343.44 -1.89 -38.71 16 22 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 23 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 24 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 25 N -0.97 -58.92 13.06 21.65 0.28 -58.64 16 26 Si 0.97 45.81 29.55 68.60 2.03 47.83 16 27 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 28 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 29 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 0.40 6.56 -2.39 -0.02 0.39 16 32 H 0.07 0.56 7.56 -2.39 -0.02 0.54 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 0.94 7.96 -2.38 -0.02 0.92 16 35 H 0.09 0.46 8.08 -2.39 -0.02 0.44 16 36 H 0.10 0.43 6.51 -2.39 -0.02 0.42 16 37 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.41 6.67 7.89 -92.71 -0.73 5.94 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.38 9.37 9.04 -74.06 -0.67 8.70 16 45 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.38 20.32 7.54 -92.71 -0.70 19.62 16 48 H 0.25 14.85 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -74.20 405.23 0.42 -73.78 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -1.11 Total: 34.33 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 4.82 Total: -3.21 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -4.10 Total: -114.05 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -1.99 Total: -36.50 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -74.20 0.42 -73.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320227204.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.801 kcal (2) G-P(sol) polarization free energy of solvation -74.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds