Wall clock time and date at job start Tue Mar 31 2020 22:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.63726 * 2 1 4 4 C 1.54324 * 110.72029 * 123.14267 * 2 1 3 5 5 N 1.47016 * 107.26889 * 140.73340 * 4 2 1 6 6 C 1.34777 * 125.64953 * 181.02636 * 5 4 2 7 7 O 1.21283 * 120.00463 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 359.74753 * 6 5 4 9 9 S 1.80997 * 109.47151 * 180.27780 * 8 6 5 10 10 C 1.76196 * 100.00314 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00626 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99674 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00584 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47157 * 59.99781 * 14 12 10 16 16 H 1.48496 * 109.47271 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46802 * 300.00045 * 14 12 10 18 18 C 1.47426 * 108.70680 * 1.28811 * 5 4 2 19 19 C 1.55133 * 104.71908 * 335.55056 * 18 5 4 20 20 H 1.08994 * 111.22907 * 279.17677 * 19 18 5 21 21 N 1.46906 * 110.90497 * 155.27327 * 19 18 5 22 22 C 1.46896 * 110.99749 * 92.97593 * 21 19 18 23 23 C 1.50703 * 109.46708 * 179.97438 * 22 21 19 24 24 C 1.29440 * 117.96004 * 94.74275 * 23 22 21 25 25 C 1.50065 * 124.07817 * 180.23434 * 24 23 22 26 26 C 1.53026 * 110.19921 * 343.31592 * 25 24 23 27 27 C 1.53396 * 108.43730 * 49.24614 * 26 25 24 28 28 C 1.50068 * 117.96479 * 274.99885 * 23 22 21 29 29 H 1.09007 * 109.47324 * 298.30747 * 1 2 3 30 30 H 1.08997 * 109.47359 * 58.31035 * 1 2 3 31 31 H 1.09001 * 109.47348 * 178.30994 * 1 2 3 32 32 H 1.09004 * 109.87967 * 21.32075 * 4 2 1 33 33 H 1.08996 * 109.88311 * 260.15234 * 4 2 1 34 34 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 35 35 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 36 36 H 0.97003 * 120.00297 * 179.97438 * 13 12 10 37 37 H 1.08999 * 110.36638 * 94.48082 * 18 5 4 38 38 H 1.09000 * 110.36899 * 216.80900 * 18 5 4 39 39 H 1.00903 * 110.99891 * 216.93205 * 21 19 18 40 40 H 1.08993 * 109.47497 * 299.99930 * 22 21 19 41 41 H 1.09000 * 109.46705 * 60.00427 * 22 21 19 42 42 H 1.07997 * 117.96479 * 0.46386 * 24 23 22 43 43 H 1.08999 * 109.48640 * 222.99533 * 25 24 23 44 44 H 1.09002 * 109.06953 * 103.36724 * 25 24 23 45 45 H 1.08993 * 109.64545 * 289.56174 * 26 25 24 46 46 H 1.08999 * 109.64346 * 168.92924 * 26 25 24 47 47 H 1.09000 * 109.64009 * 172.88176 * 27 26 25 48 48 H 1.08998 * 109.64223 * 52.25071 * 27 26 25 49 49 H 1.08999 * 109.36056 * 283.06353 * 28 23 22 50 50 H 1.09005 * 109.35410 * 42.77581 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7892 1.2086 5 7 3.2470 -1.5461 0.7426 6 6 3.9957 -2.3768 1.4949 7 8 4.9439 -2.9514 1.0034 8 6 3.6583 -2.5867 2.9486 9 16 4.8431 -3.7416 3.6823 10 6 4.2302 -3.8013 5.3331 11 1 3.3630 -3.2195 5.6086 12 6 4.8612 -4.5968 6.2795 13 7 5.9173 -5.3071 5.9435 14 14 4.2110 -4.6606 8.0295 15 1 2.8113 -5.1566 8.0197 16 1 5.0547 -5.5770 8.8379 17 1 4.2497 -3.2994 8.6217 18 6 3.4707 -1.2412 -0.6823 19 6 2.0828 -0.7948 -1.2125 20 1 1.4510 -1.6542 -1.4371 21 7 2.2254 0.0723 -2.3897 22 6 2.1633 -0.7108 -3.6309 23 6 2.3123 0.2106 -4.8141 24 6 3.4949 0.3668 -5.3166 25 6 3.8003 1.2529 -6.4886 26 6 2.5125 1.5982 -7.2396 27 6 1.4707 2.0781 -6.2210 28 6 1.0813 0.8946 -5.3328 29 1 -0.3634 0.4873 0.9048 30 1 -0.3634 0.5398 -0.8744 31 1 -0.3634 -1.0272 -0.0303 32 1 1.3140 -1.4755 1.5780 33 1 2.3712 -0.0992 1.9991 34 1 3.7072 -1.6331 3.4744 35 1 2.6518 -2.9967 3.0325 36 1 6.3585 -5.8628 6.6048 37 1 4.1970 -0.4354 -0.7884 38 1 3.8102 -2.1313 -1.2120 39 1 1.5289 0.8024 -2.3875 40 1 2.9689 -1.4450 -3.6380 41 1 1.2034 -1.2240 -3.6891 42 1 4.3122 -0.1772 -4.8667 43 1 4.4856 0.7401 -7.1634 44 1 4.2660 2.1706 -6.1293 45 1 2.1402 0.7129 -7.7550 46 1 2.7106 2.3902 -7.9618 47 1 0.5895 2.4484 -6.7450 48 1 1.8966 2.8721 -5.6077 49 1 0.4916 0.1854 -5.9136 50 1 0.4876 1.2556 -4.4929 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327826990.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:24 Heat of formation + Delta-G solvation = -37.605065 kcal Electronic energy + Delta-G solvation = -26477.292620 eV Core-core repulsion = 22822.764033 eV Total energy + Delta-G solvation = -3654.528587 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.07375 -39.10873 -37.75806 -35.28760 -32.85789 -32.41180 -31.54494 -31.09841 -29.91208 -27.58237 -26.46732 -25.50635 -25.11793 -23.49483 -22.29281 -21.60512 -20.59396 -19.35690 -17.94209 -17.65548 -16.80012 -16.38969 -16.22070 -15.48016 -15.14152 -14.82721 -14.77612 -14.66482 -14.24956 -14.13359 -13.84696 -13.78409 -13.73214 -13.41721 -13.15039 -12.90231 -12.65952 -12.57381 -12.48422 -12.35718 -12.16992 -12.03620 -11.70818 -11.37536 -11.30932 -11.19766 -11.02892 -11.02658 -10.86941 -10.76004 -10.74546 -10.46381 -9.81077 -9.37836 -9.14942 -9.04439 -8.77959 -8.43173 -8.21658 -6.48384 -6.19831 -3.90487 1.90833 2.92229 3.10386 3.24369 3.26514 3.30041 3.61478 3.94255 4.12792 4.22024 4.30289 4.35695 4.40215 4.52078 4.64873 4.82467 4.88286 4.99790 5.02705 5.07271 5.12661 5.12987 5.15000 5.20220 5.21200 5.24027 5.34399 5.43192 5.46361 5.52120 5.54029 5.56345 5.58200 5.64553 5.65461 5.76012 5.78084 5.82411 5.88175 5.92157 5.95461 5.99953 6.16140 6.35578 6.43261 6.71379 6.75075 7.01911 7.60598 7.71894 8.36554 8.59906 9.25058 10.87544 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028066 B = 0.001853 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.402544 B =15103.611161 C =15900.755384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 H 0.094 0.906 4 C 0.109 3.891 5 N -0.627 5.627 6 C 0.548 3.452 7 O -0.516 6.516 8 C -0.146 4.146 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.121 3.879 19 C 0.076 3.924 20 H 0.064 0.936 21 N -0.670 5.670 22 C 0.091 3.909 23 C -0.129 4.129 24 C -0.131 4.131 25 C -0.092 4.092 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.081 4.081 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.269 0.731 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.344 0.656 40 H 0.078 0.922 41 H 0.035 0.965 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.720 16.421 -23.790 31.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.112 0.888 4 C -0.015 4.015 5 N -0.364 5.364 6 C 0.337 3.663 7 O -0.390 6.390 8 C -0.297 4.297 9 S 0.166 5.834 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.003 4.003 19 C -0.035 4.035 20 H 0.082 0.918 21 N -0.302 5.302 22 C -0.037 4.037 23 C -0.129 4.129 24 C -0.150 4.150 25 C -0.129 4.129 26 C -0.158 4.158 27 C -0.157 4.157 28 C -0.118 4.118 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.163 0.837 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.124 0.876 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.429 15.355 -24.367 30.986 hybrid contribution -2.459 0.397 1.767 3.054 sum -13.888 15.752 -22.600 30.851 Atomic orbital electron populations 1.21795 0.93798 1.02346 1.02244 1.22411 0.96076 1.00128 0.93959 0.88785 1.22022 0.88117 0.94794 0.96579 1.48422 1.30831 1.46177 1.11002 1.20011 0.81435 0.77199 0.87652 1.90709 1.27755 1.47092 1.73426 1.23504 1.06254 1.05952 0.93980 1.85399 1.36251 1.53901 1.07821 1.22821 1.17572 1.32689 0.95298 0.90999 1.24990 0.94718 0.94601 0.99255 1.70012 1.18833 1.26458 1.34969 0.86224 0.78799 0.78179 0.82294 1.19965 1.20800 1.19939 1.22121 0.96223 1.00816 0.81136 1.22827 0.96090 0.94962 0.89630 0.91761 1.60380 1.55651 1.13765 1.00390 1.21125 1.00646 0.94516 0.87447 1.20660 0.95162 0.99968 0.97136 1.21973 0.96760 0.99064 0.97178 1.20468 0.97711 0.99106 0.95597 1.21606 0.95524 1.01068 0.97642 1.21588 0.98855 0.97690 0.97534 1.20359 0.95538 0.96867 0.98999 0.91717 0.92456 0.92230 0.91183 0.91121 0.89312 0.89380 0.92136 0.90718 0.90885 0.83732 0.90347 0.94683 0.87588 0.91097 0.90799 0.91848 0.91827 0.91850 0.91612 0.91207 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.14 37.16 0.34 -0.59 16 2 C -0.11 -0.89 2.94 -88.78 -0.26 -1.15 16 3 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.11 1.22 6.08 -3.07 -0.02 1.20 16 5 N -0.63 -9.53 3.32 -170.38 -0.57 -10.09 16 6 C 0.55 11.05 7.87 -10.98 -0.09 10.96 16 7 O -0.52 -12.44 16.12 5.55 0.09 -12.35 16 8 C -0.15 -3.09 5.35 36.01 0.19 -2.90 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.54 -15.44 9.50 30.94 0.29 -15.15 16 11 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 12 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 14 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 18 C 0.12 1.59 6.61 -2.41 -0.02 1.57 16 19 C 0.08 0.71 2.85 -65.44 -0.19 0.52 16 20 H 0.06 0.62 7.73 -51.93 -0.40 0.22 16 21 N -0.67 -5.45 6.40 -105.60 -0.68 -6.12 16 22 C 0.09 0.72 5.55 -4.98 -0.03 0.69 16 23 C -0.13 -0.95 5.35 -100.94 -0.54 -1.49 16 24 C -0.13 -1.01 9.37 -35.90 -0.34 -1.35 16 25 C -0.09 -0.59 6.11 -28.18 -0.17 -0.76 16 26 C -0.12 -0.68 6.01 -26.51 -0.16 -0.84 16 27 C -0.12 -0.66 6.01 -26.52 -0.16 -0.82 16 28 C -0.08 -0.48 5.80 -28.18 -0.16 -0.64 16 29 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 35 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 36 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.06 8.03 -51.93 -0.42 0.64 16 39 H 0.34 2.35 8.40 -39.29 -0.33 2.02 16 40 H 0.08 0.71 7.80 -51.93 -0.41 0.30 16 41 H 0.03 0.26 8.06 -51.93 -0.42 -0.16 16 42 H 0.11 0.89 7.74 -52.49 -0.41 0.49 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.37 8.12 -51.93 -0.42 -0.06 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 LS Contribution 412.44 15.07 6.22 6.22 Total: -1.00 -33.95 412.44 -11.92 -45.88 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -9.09 Total: -1.79 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -1.40 Total: -8.71 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.51 Total: -41.89 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.35 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.95 -11.92 -45.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327826990.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.272 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds