Wall clock time and date at job start Tue Mar 31 2020 22:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.63726 * 2 1 4 4 C 1.54324 * 110.72029 * 123.14267 * 2 1 3 5 5 N 1.47016 * 107.26889 * 140.73340 * 4 2 1 6 6 C 1.34777 * 125.64953 * 181.02636 * 5 4 2 7 7 O 1.21283 * 120.00463 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 359.74753 * 6 5 4 9 9 S 1.80997 * 109.47151 * 180.27780 * 8 6 5 10 10 C 1.76196 * 100.00314 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00626 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99674 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00584 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47157 * 59.99781 * 14 12 10 16 16 H 1.48496 * 109.47271 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46802 * 300.00045 * 14 12 10 18 18 C 1.47426 * 108.70680 * 1.28811 * 5 4 2 19 19 C 1.55133 * 104.71908 * 335.55056 * 18 5 4 20 20 H 1.08994 * 111.22907 * 279.17677 * 19 18 5 21 21 N 1.46906 * 110.90497 * 155.27327 * 19 18 5 22 22 C 1.46896 * 110.99749 * 92.97593 * 21 19 18 23 23 C 1.50703 * 109.46708 * 179.97438 * 22 21 19 24 24 C 1.29440 * 117.96004 * 94.74275 * 23 22 21 25 25 C 1.50065 * 124.07817 * 180.23434 * 24 23 22 26 26 C 1.53026 * 110.19921 * 343.31592 * 25 24 23 27 27 C 1.53396 * 108.43730 * 49.24614 * 26 25 24 28 28 C 1.50068 * 117.96479 * 274.99885 * 23 22 21 29 29 H 1.09007 * 109.47324 * 298.30747 * 1 2 3 30 30 H 1.08997 * 109.47359 * 58.31035 * 1 2 3 31 31 H 1.09001 * 109.47348 * 178.30994 * 1 2 3 32 32 H 1.09004 * 109.87967 * 21.32075 * 4 2 1 33 33 H 1.08996 * 109.88311 * 260.15234 * 4 2 1 34 34 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 35 35 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 36 36 H 0.97003 * 120.00297 * 179.97438 * 13 12 10 37 37 H 1.08999 * 110.36638 * 94.48082 * 18 5 4 38 38 H 1.09000 * 110.36899 * 216.80900 * 18 5 4 39 39 H 1.00903 * 110.99891 * 216.93205 * 21 19 18 40 40 H 1.08993 * 109.47497 * 299.99930 * 22 21 19 41 41 H 1.09000 * 109.46705 * 60.00427 * 22 21 19 42 42 H 1.07997 * 117.96479 * 0.46386 * 24 23 22 43 43 H 1.08999 * 109.48640 * 222.99533 * 25 24 23 44 44 H 1.09002 * 109.06953 * 103.36724 * 25 24 23 45 45 H 1.08993 * 109.64545 * 289.56174 * 26 25 24 46 46 H 1.08999 * 109.64346 * 168.92924 * 26 25 24 47 47 H 1.09000 * 109.64009 * 172.88176 * 27 26 25 48 48 H 1.08998 * 109.64223 * 52.25071 * 27 26 25 49 49 H 1.08999 * 109.36056 * 283.06353 * 28 23 22 50 50 H 1.09005 * 109.35410 * 42.77581 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7892 1.2086 5 7 3.2470 -1.5461 0.7426 6 6 3.9957 -2.3768 1.4949 7 8 4.9439 -2.9514 1.0034 8 6 3.6583 -2.5867 2.9486 9 16 4.8431 -3.7416 3.6823 10 6 4.2302 -3.8013 5.3331 11 1 3.3630 -3.2195 5.6086 12 6 4.8612 -4.5968 6.2795 13 7 5.9173 -5.3071 5.9435 14 14 4.2110 -4.6606 8.0295 15 1 2.8113 -5.1566 8.0197 16 1 5.0547 -5.5770 8.8379 17 1 4.2497 -3.2994 8.6217 18 6 3.4707 -1.2412 -0.6823 19 6 2.0828 -0.7948 -1.2125 20 1 1.4510 -1.6542 -1.4371 21 7 2.2254 0.0723 -2.3897 22 6 2.1633 -0.7108 -3.6309 23 6 2.3123 0.2106 -4.8141 24 6 3.4949 0.3668 -5.3166 25 6 3.8003 1.2529 -6.4886 26 6 2.5125 1.5982 -7.2396 27 6 1.4707 2.0781 -6.2210 28 6 1.0813 0.8946 -5.3328 29 1 -0.3634 0.4873 0.9048 30 1 -0.3634 0.5398 -0.8744 31 1 -0.3634 -1.0272 -0.0303 32 1 1.3140 -1.4755 1.5780 33 1 2.3712 -0.0992 1.9991 34 1 3.7072 -1.6331 3.4744 35 1 2.6518 -2.9967 3.0325 36 1 6.3585 -5.8628 6.6048 37 1 4.1970 -0.4354 -0.7884 38 1 3.8102 -2.1313 -1.2120 39 1 1.5289 0.8024 -2.3875 40 1 2.9689 -1.4450 -3.6380 41 1 1.2034 -1.2240 -3.6891 42 1 4.3122 -0.1772 -4.8667 43 1 4.4856 0.7401 -7.1634 44 1 4.2660 2.1706 -6.1293 45 1 2.1402 0.7129 -7.7550 46 1 2.7106 2.3902 -7.9618 47 1 0.5895 2.4484 -6.7450 48 1 1.8966 2.8721 -5.6077 49 1 0.4916 0.1854 -5.9136 50 1 0.4876 1.2556 -4.4929 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327826990.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:23 Heat of formation + Delta-G solvation = -58.503473 kcal Electronic energy + Delta-G solvation = -26478.198843 eV Core-core repulsion = 22822.764033 eV Total energy + Delta-G solvation = -3655.434810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.23803 -39.79436 -38.93997 -36.14286 -34.59684 -33.80282 -32.21566 -31.63019 -31.28440 -28.71296 -27.66038 -27.29574 -25.90028 -24.02133 -23.13813 -22.23015 -21.37132 -20.77821 -19.64038 -18.46077 -18.04449 -17.63787 -16.94216 -16.88703 -16.59165 -16.21367 -16.02965 -15.55031 -15.29387 -14.94467 -14.84054 -14.61008 -14.50467 -14.37619 -14.30734 -14.09135 -13.57765 -13.54707 -13.30191 -13.19173 -13.13450 -13.05088 -12.86913 -12.86046 -12.64666 -12.58724 -12.12168 -12.00273 -11.76309 -11.63456 -11.55882 -11.28591 -11.13630 -11.02353 -10.97343 -10.30773 -9.78660 -9.71334 -9.43105 -8.70116 -8.35225 -6.14737 1.20442 1.31374 1.43858 1.44026 1.51653 1.54564 2.03626 2.26493 2.98676 3.17883 3.19452 3.38638 3.53751 3.75787 3.83659 3.84253 3.99598 4.09191 4.18046 4.22697 4.27191 4.36789 4.38671 4.40797 4.46355 4.51159 4.56456 4.62668 4.71564 4.73469 4.75459 4.79053 4.86162 4.88412 4.98914 5.02693 5.07198 5.10047 5.16580 5.22496 5.28641 5.34787 5.37795 5.40255 5.49625 5.77519 5.98111 6.16738 6.18593 6.32671 6.45734 7.05251 7.06458 8.73902 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028066 B = 0.001853 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.402544 B =15103.611161 C =15900.755384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.104 0.896 4 C 0.096 3.904 5 N -0.617 5.617 6 C 0.545 3.455 7 O -0.569 6.569 8 C -0.118 4.118 9 S -0.152 6.152 10 C -0.547 4.547 11 H 0.084 0.916 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 1.001 2.999 15 H -0.261 1.261 16 H -0.278 1.278 17 H -0.261 1.261 18 C 0.116 3.884 19 C 0.091 3.909 20 H 0.066 0.934 21 N -0.670 5.670 22 C 0.093 3.907 23 C -0.127 4.127 24 C -0.145 4.145 25 C -0.092 4.092 26 C -0.120 4.120 27 C -0.118 4.118 28 C -0.080 4.080 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.272 0.728 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.357 0.643 40 H 0.060 0.940 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.028 18.651 -23.619 34.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.122 0.878 4 C -0.026 4.026 5 N -0.351 5.351 6 C 0.333 3.667 7 O -0.448 6.448 8 C -0.269 4.269 9 S 0.075 5.925 10 C -0.695 4.695 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.186 1.186 16 H -0.204 1.204 17 H -0.186 1.186 18 C -0.007 4.007 19 C -0.020 4.020 20 H 0.084 0.916 21 N -0.303 5.303 22 C -0.036 4.036 23 C -0.127 4.127 24 C -0.164 4.164 25 C -0.129 4.129 26 C -0.157 4.157 27 C -0.155 4.155 28 C -0.117 4.117 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.178 0.822 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.793 17.641 -24.228 33.422 hybrid contribution -1.439 -0.230 1.588 2.155 sum -16.232 17.411 -22.640 32.851 Atomic orbital electron populations 1.21779 0.91636 1.02614 1.03653 1.22375 0.97584 0.99693 0.91425 0.87786 1.22435 0.86721 0.95102 0.98373 1.48353 1.30745 1.44481 1.11560 1.19832 0.81466 0.77836 0.87555 1.90685 1.30246 1.49636 1.74184 1.23289 1.04611 1.04619 0.94401 1.85612 1.40203 1.57077 1.09567 1.23160 1.17981 1.33103 0.95233 0.89819 1.26162 0.94747 0.93797 1.04460 1.70186 1.20438 1.27389 1.36759 0.84976 0.78458 0.78753 0.75634 1.18561 1.20351 1.18574 1.22264 0.98831 0.99747 0.79901 1.22616 0.93274 0.95530 0.90616 0.91589 1.60242 1.56359 1.13826 0.99915 1.21086 1.00424 0.94429 0.87641 1.20768 0.95690 0.99592 0.96647 1.22056 0.96661 0.99682 0.98041 1.20477 0.98406 0.98772 0.95207 1.21610 0.95028 1.01328 0.97777 1.21591 0.99220 0.97335 0.97404 1.20395 0.94745 0.97005 0.99521 0.90724 0.90658 0.92574 0.90157 0.90135 0.87494 0.87468 0.91955 0.91257 0.93060 0.82219 0.92192 0.93694 0.89154 0.90906 0.90813 0.92022 0.90866 0.90606 0.92010 0.90722 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.14 71.98 0.66 -0.58 16 2 C -0.09 -1.25 2.94 -9.60 -0.03 -1.27 16 3 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 4 C 0.10 1.93 6.08 86.73 0.53 2.46 16 5 N -0.62 -18.46 3.32 -811.36 -2.70 -21.16 16 6 C 0.54 22.33 7.87 87.66 0.69 23.02 16 7 O -0.57 -28.79 16.12 -3.04 -0.05 -28.84 16 8 C -0.12 -4.98 5.35 71.24 0.38 -4.60 16 9 S -0.15 -8.71 20.57 -56.49 -1.16 -9.87 16 10 C -0.55 -31.71 9.50 67.95 0.65 -31.07 16 11 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 12 C 0.01 0.75 5.49 84.86 0.47 1.22 16 13 N -0.91 -56.70 13.22 21.65 0.29 -56.41 16 14 Si 1.00 43.83 29.55 68.60 2.03 45.85 16 15 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 18 C 0.12 3.06 6.61 86.93 0.57 3.64 16 19 C 0.09 1.55 2.85 46.38 0.13 1.68 16 20 H 0.07 1.15 7.73 -2.39 -0.02 1.13 16 21 N -0.67 -9.70 6.40 -488.01 -3.12 -12.83 16 22 C 0.09 1.38 5.55 85.56 0.47 1.85 16 23 C -0.13 -1.73 5.35 -15.09 -0.08 -1.81 16 24 C -0.15 -2.24 9.37 27.04 0.25 -1.98 16 25 C -0.09 -1.12 6.11 29.66 0.18 -0.94 16 26 C -0.12 -1.17 6.01 30.74 0.18 -0.98 16 27 C -0.12 -1.05 6.01 30.73 0.18 -0.87 16 28 C -0.08 -0.77 5.80 29.66 0.17 -0.60 16 29 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 32 H 0.08 1.50 7.82 -2.39 -0.02 1.48 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 4.09 8.14 -2.39 -0.02 4.08 16 35 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 36 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.05 1.57 8.03 -2.39 -0.02 1.56 16 39 H 0.36 3.77 8.40 -89.69 -0.75 3.02 16 40 H 0.06 1.11 7.80 -2.39 -0.02 1.09 16 41 H 0.04 0.59 8.06 -2.39 -0.02 0.57 16 42 H 0.09 1.63 7.74 -2.91 -0.02 1.60 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 0.63 8.12 -2.39 -0.02 0.61 16 46 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.06 0.61 8.12 -2.39 -0.02 0.59 16 49 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.08 0.60 8.11 -2.38 -0.02 0.58 16 Total: -1.00 -77.00 412.44 0.85 -76.16 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.15 Total: 17.94 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 5.42 Total: -10.84 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -5.53 Total: -90.39 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.05 Total: -28.84 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -77.00 0.85 -76.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327826990.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.655 kcal (2) G-P(sol) polarization free energy of solvation -77.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds