Wall clock time and date at job start Tue Mar 31 2020 22:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47272 * 2 1 4 4 C 1.50703 * 109.47027 * 119.99796 * 2 1 3 5 5 O 1.21285 * 119.99870 * 109.76475 * 4 2 1 6 6 N 1.34773 * 120.00091 * 289.76450 * 4 2 1 7 7 C 1.46509 * 119.99916 * 186.04727 * 6 4 2 8 8 C 1.46499 * 120.00158 * 6.04653 * 6 4 2 9 9 C 1.53001 * 109.46849 * 96.13441 * 8 6 4 10 10 H 1.09001 * 109.47057 * 302.54003 * 9 8 6 11 11 O 1.42906 * 109.47110 * 62.54148 * 9 8 6 12 12 C 1.53004 * 109.46898 * 182.54071 * 9 8 6 13 13 N 1.46503 * 109.47054 * 180.02562 * 12 9 8 14 14 C 1.46501 * 119.99967 * 89.99825 * 13 12 9 15 15 C 1.36937 * 119.99628 * 270.00081 * 13 12 9 16 16 H 1.07999 * 120.00288 * 33.05665 * 15 13 12 17 17 C 1.38816 * 119.99535 * 213.05282 * 15 13 12 18 18 N 1.31612 * 120.00229 * 355.65025 * 17 15 13 19 19 Si 1.86802 * 119.99891 * 175.65200 * 17 15 13 20 20 H 1.48497 * 109.47131 * 59.99523 * 19 17 15 21 21 H 1.48490 * 109.47349 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46954 * 299.99984 * 19 17 15 23 23 C 1.50696 * 109.47296 * 239.99951 * 2 1 3 24 24 C 1.38223 * 120.01383 * 299.72510 * 23 2 1 25 25 C 1.38227 * 120.02540 * 179.72073 * 24 23 2 26 26 C 1.38268 * 120.04794 * 0.55446 * 25 24 23 27 27 C 1.38171 * 120.02855 * 359.72027 * 26 25 24 28 28 C 1.38442 * 120.01334 * 119.99913 * 23 2 1 29 29 F 1.35100 * 120.02263 * 0.02614 * 28 23 2 30 30 H 1.08996 * 109.47426 * 70.04500 * 1 2 3 31 31 H 1.09002 * 109.46840 * 190.04567 * 1 2 3 32 32 H 1.09000 * 109.47466 * 310.04146 * 1 2 3 33 33 H 1.08996 * 109.46758 * 275.11630 * 7 6 4 34 34 H 1.09003 * 109.46740 * 35.11756 * 7 6 4 35 35 H 1.08996 * 109.46666 * 155.11560 * 7 6 4 36 36 H 1.08998 * 109.47256 * 336.13400 * 8 6 4 37 37 H 1.09001 * 109.47117 * 216.13018 * 8 6 4 38 38 H 0.96699 * 114.00001 * 59.99988 * 11 9 8 39 39 H 1.09001 * 109.47211 * 299.99837 * 12 9 8 40 40 H 1.08999 * 109.46957 * 60.00253 * 12 9 8 41 41 H 1.08998 * 109.47056 * 94.88189 * 14 13 12 42 42 H 1.09003 * 109.47154 * 214.87760 * 14 13 12 43 43 H 1.09001 * 109.47071 * 334.87903 * 14 13 12 44 44 H 0.96998 * 120.00296 * 179.97438 * 18 17 15 45 45 H 1.08002 * 119.98569 * 0.02562 * 24 23 2 46 46 H 1.07990 * 119.97146 * 180.27912 * 25 24 23 47 47 H 1.07998 * 119.98417 * 179.74918 * 26 25 24 48 48 H 1.08001 * 120.01306 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5693 -1.7931 1.1289 6 7 1.8848 -0.1425 2.4439 7 6 2.4886 -0.7675 3.6234 8 6 1.1207 1.0996 2.5833 9 6 -0.3161 0.7712 2.9939 10 1 -0.7629 0.1076 2.2534 11 8 -0.3116 0.1271 4.2696 12 6 -1.1306 2.0637 3.0779 13 7 -2.5062 1.7492 3.4717 14 6 -2.8727 1.7151 4.8897 15 6 -3.4495 1.4872 2.5142 16 1 -3.1646 0.9957 1.5956 17 6 -4.7719 1.8533 2.7242 18 7 -5.1354 2.3740 3.8770 19 14 -6.0356 1.6067 1.3707 20 1 -6.1132 0.1652 1.0227 21 1 -7.3635 2.0749 1.8421 22 1 -5.6341 2.3847 0.1711 23 6 2.0323 -0.7104 -1.2304 24 6 1.7033 -2.0354 -1.4466 25 6 2.1592 -2.6856 -2.5780 26 6 2.9542 -2.0148 -3.4889 27 6 3.2891 -0.6919 -3.2721 28 6 2.8283 -0.0378 -2.1419 29 9 3.1555 1.2555 -1.9285 30 1 -0.3634 0.3507 -0.9659 31 1 -0.3633 -1.0119 0.1793 32 1 -0.3634 0.6611 0.7867 33 1 1.8169 -1.5323 4.0132 34 1 3.4383 -1.2251 3.3461 35 1 2.6598 -0.0101 4.3883 36 1 1.1142 1.6310 1.6317 37 1 1.5823 1.7264 3.3463 38 1 0.0727 0.6610 4.9783 39 1 -0.6838 2.7272 3.8184 40 1 -1.1340 2.5548 2.1049 41 1 -3.2839 2.6813 5.1820 42 1 -3.6192 0.9379 5.0535 43 1 -1.9875 1.5007 5.4886 44 1 -6.0594 2.6302 4.0236 45 1 1.0857 -2.5614 -0.7336 46 1 1.8979 -3.7194 -2.7482 47 1 3.3132 -2.5250 -4.3705 48 1 3.9098 -0.1681 -3.9841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332665438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:01 Heat of formation + Delta-G solvation = -72.319347 kcal Electronic energy + Delta-G solvation = -30670.996043 eV Core-core repulsion = 26448.748956 eV Total energy + Delta-G solvation = -4222.247087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.03752 -40.54482 -38.86908 -37.62256 -35.28338 -34.51891 -34.32662 -31.46065 -30.66483 -30.11683 -29.28892 -27.16799 -25.92681 -25.52663 -24.45461 -22.82641 -22.25347 -21.75555 -20.66705 -19.02079 -17.82776 -17.31649 -16.77160 -16.68529 -16.16754 -15.88384 -15.69498 -15.61098 -15.16328 -14.84512 -14.82049 -14.28829 -13.91852 -13.72512 -13.69818 -13.33863 -13.23110 -13.01999 -12.89299 -12.48270 -12.28477 -12.16499 -12.08186 -12.03318 -11.81298 -11.60245 -11.26586 -11.19962 -10.98208 -10.91311 -10.71712 -10.47848 -10.36498 -10.13252 -9.95047 -9.82815 -9.67641 -9.05908 -8.77733 -8.59146 -8.40716 -6.58691 -5.76411 -3.30552 1.00323 1.11644 2.62427 2.99262 3.36524 3.42033 3.42220 3.50717 4.10399 4.31352 4.40941 4.47038 4.64944 4.70830 4.83066 4.98613 5.02515 5.09260 5.15737 5.17379 5.26847 5.35677 5.38563 5.52316 5.61247 5.67065 5.72864 5.79069 5.79461 5.88088 5.92458 5.93288 5.97600 5.99194 6.18793 6.26878 6.30718 6.43505 6.55109 6.65772 6.75485 6.85949 7.35073 7.45945 7.77523 7.80915 8.12361 8.17548 8.43813 9.24259 9.83144 10.37261 11.27405 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012049 B = 0.003403 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.285679 B = 8226.589058 C = 9606.825602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.073 4.073 3 H 0.105 0.895 4 C 0.522 3.478 5 O -0.538 6.538 6 N -0.603 5.603 7 C 0.096 3.904 8 C 0.068 3.932 9 C 0.057 3.943 10 H 0.105 0.895 11 O -0.545 6.545 12 C 0.124 3.876 13 N -0.591 5.591 14 C 0.169 3.831 15 C -0.263 4.263 16 H 0.062 0.938 17 C 0.015 3.985 18 N -0.903 5.903 19 Si 0.900 3.100 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C -0.099 4.099 24 C -0.051 4.051 25 C -0.133 4.133 26 C -0.093 4.093 27 C -0.160 4.160 28 C 0.102 3.898 29 F -0.140 7.140 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.358 0.642 39 H 0.039 0.961 40 H 0.056 0.944 41 H 0.026 0.974 42 H 0.039 0.961 43 H -0.003 1.003 44 H 0.254 0.746 45 H 0.132 0.868 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.477 -4.145 -8.464 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.094 4.094 3 H 0.123 0.877 4 C 0.309 3.691 5 O -0.415 6.415 6 N -0.335 5.335 7 C -0.047 4.047 8 C -0.056 4.056 9 C -0.006 4.006 10 H 0.122 0.878 11 O -0.348 6.348 12 C -0.005 4.005 13 N -0.313 5.313 14 C 0.025 3.975 15 C -0.393 4.393 16 H 0.080 0.920 17 C -0.185 4.185 18 N -0.546 5.546 19 Si 0.729 3.271 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.208 1.208 23 C -0.100 4.100 24 C -0.069 4.069 25 C -0.151 4.151 26 C -0.111 4.111 27 C -0.178 4.178 28 C 0.083 3.917 29 F -0.118 7.118 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.204 0.796 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.015 0.985 44 H 0.064 0.936 45 H 0.150 0.850 46 H 0.146 0.854 47 H 0.148 0.852 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 17.289 -5.080 -8.734 20.025 hybrid contribution -0.460 0.678 -0.323 0.881 sum 16.829 -4.402 -9.057 19.612 Atomic orbital electron populations 1.22193 0.90661 1.04007 1.04414 1.20210 0.98724 1.00215 0.90275 0.87684 1.20337 0.78842 0.85653 0.84248 1.90678 1.44027 1.20574 1.86257 1.47675 1.52768 1.25874 1.07168 1.21565 0.98078 0.98357 0.86695 1.22684 0.93888 0.85632 1.03388 1.23669 0.91787 0.98906 0.86226 0.87768 1.86668 1.85034 1.45278 1.17803 1.21336 0.87385 0.92569 0.99237 1.43592 1.03814 1.81101 1.02783 1.20800 0.94387 0.99866 0.82463 1.19008 0.88678 1.32950 0.98639 0.92031 1.25304 0.98289 0.98097 0.96784 1.70017 1.16888 1.45589 1.22110 0.86426 0.80795 0.77953 0.81919 1.20899 1.21564 1.20778 1.19413 0.99664 0.95318 0.95614 1.20910 0.97361 0.92559 0.96093 1.21205 0.98882 1.00475 0.94560 1.20988 0.97284 0.93525 0.99322 1.21043 1.03347 0.96044 0.97400 1.17524 0.98949 0.78982 0.96288 1.91471 1.91030 1.34489 1.94827 0.90927 0.91574 0.89387 0.92019 0.91756 0.91428 0.89241 0.90258 0.79622 0.94268 0.92584 0.95603 0.94256 0.98471 0.93590 0.84995 0.85375 0.85222 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 7.79 37.16 0.29 -1.71 16 2 C -0.07 -0.94 2.04 -92.93 -0.19 -1.13 16 3 H 0.11 1.24 6.10 -51.93 -0.32 0.93 16 4 C 0.52 7.61 6.86 -10.99 -0.08 7.54 16 5 O -0.54 -9.26 14.49 5.55 0.08 -9.18 16 6 N -0.60 -7.87 2.86 -181.57 -0.52 -8.39 16 7 C 0.10 1.13 9.55 59.85 0.57 1.70 16 8 C 0.07 0.80 4.62 -4.04 -0.02 0.79 16 9 C 0.06 0.88 2.58 -26.73 -0.07 0.81 16 10 H 0.10 1.86 5.73 -51.93 -0.30 1.56 16 11 O -0.54 -8.83 11.26 -35.23 -0.40 -9.22 16 12 C 0.12 2.24 5.32 -4.04 -0.02 2.22 16 13 N -0.59 -14.10 2.84 -181.11 -0.51 -14.62 16 14 C 0.17 4.07 8.65 59.85 0.52 4.59 16 15 C -0.26 -6.98 9.57 -15.06 -0.14 -7.12 16 16 H 0.06 1.59 7.83 -52.49 -0.41 1.18 16 17 C 0.01 0.40 5.38 -17.43 -0.09 0.31 16 18 N -0.90 -25.88 10.58 55.49 0.59 -25.29 16 19 Si 0.90 21.38 29.56 -169.99 -5.02 16.36 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.10 -1.28 4.49 -104.55 -0.47 -1.75 16 24 C -0.05 -0.63 7.93 -39.59 -0.31 -0.95 16 25 C -0.13 -1.36 10.05 -39.57 -0.40 -1.76 16 26 C -0.09 -0.86 10.04 -39.59 -0.40 -1.26 16 27 C -0.16 -1.64 10.03 -39.52 -0.40 -2.03 16 28 C 0.10 1.26 7.25 -39.42 -0.29 0.97 16 29 F -0.14 -1.77 16.19 2.25 0.04 -1.73 16 30 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 31 H 0.07 0.89 7.75 -51.93 -0.40 0.49 16 32 H 0.09 1.19 3.75 -51.93 -0.19 1.00 16 33 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 34 H 0.06 0.78 7.68 -51.93 -0.40 0.38 16 35 H 0.07 0.62 7.90 -51.93 -0.41 0.21 16 36 H 0.09 0.97 5.29 -51.93 -0.27 0.69 16 37 H 0.08 0.78 7.96 -51.93 -0.41 0.36 16 38 H 0.36 4.57 8.79 45.56 0.40 4.97 16 39 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 40 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 41 H 0.03 0.67 7.27 -51.93 -0.38 0.29 16 42 H 0.04 1.05 7.54 -51.93 -0.39 0.65 16 43 H 0.00 -0.07 6.99 -51.93 -0.36 -0.43 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.13 1.69 7.42 -52.49 -0.39 1.30 16 46 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 48 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -32.68 384.07 -7.78 -40.46 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.32 Total: 4.63 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.49 Total: 1.20 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.45 Total: -48.30 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.32 Total: -18.40 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.68 -7.78 -40.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332665438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.858 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds