Wall clock time and date at job start Tue Mar 31 2020 22:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47272 * 2 1 4 4 C 1.50703 * 109.47027 * 119.99796 * 2 1 3 5 5 O 1.21285 * 119.99870 * 109.76475 * 4 2 1 6 6 N 1.34773 * 120.00091 * 289.76450 * 4 2 1 7 7 C 1.46509 * 119.99916 * 186.04727 * 6 4 2 8 8 C 1.46499 * 120.00158 * 6.04653 * 6 4 2 9 9 C 1.53001 * 109.46849 * 96.13441 * 8 6 4 10 10 H 1.09001 * 109.47057 * 302.54003 * 9 8 6 11 11 O 1.42906 * 109.47110 * 62.54148 * 9 8 6 12 12 C 1.53004 * 109.46898 * 182.54071 * 9 8 6 13 13 N 1.46503 * 109.47054 * 180.02562 * 12 9 8 14 14 C 1.46501 * 119.99967 * 89.99825 * 13 12 9 15 15 C 1.36937 * 119.99628 * 270.00081 * 13 12 9 16 16 H 1.07999 * 120.00288 * 33.05665 * 15 13 12 17 17 C 1.38816 * 119.99535 * 213.05282 * 15 13 12 18 18 N 1.31612 * 120.00229 * 355.65025 * 17 15 13 19 19 Si 1.86802 * 119.99891 * 175.65200 * 17 15 13 20 20 H 1.48497 * 109.47131 * 59.99523 * 19 17 15 21 21 H 1.48490 * 109.47349 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46954 * 299.99984 * 19 17 15 23 23 C 1.50696 * 109.47296 * 239.99951 * 2 1 3 24 24 C 1.38223 * 120.01383 * 299.72510 * 23 2 1 25 25 C 1.38227 * 120.02540 * 179.72073 * 24 23 2 26 26 C 1.38268 * 120.04794 * 0.55446 * 25 24 23 27 27 C 1.38171 * 120.02855 * 359.72027 * 26 25 24 28 28 C 1.38442 * 120.01334 * 119.99913 * 23 2 1 29 29 F 1.35100 * 120.02263 * 0.02614 * 28 23 2 30 30 H 1.08996 * 109.47426 * 70.04500 * 1 2 3 31 31 H 1.09002 * 109.46840 * 190.04567 * 1 2 3 32 32 H 1.09000 * 109.47466 * 310.04146 * 1 2 3 33 33 H 1.08996 * 109.46758 * 275.11630 * 7 6 4 34 34 H 1.09003 * 109.46740 * 35.11756 * 7 6 4 35 35 H 1.08996 * 109.46666 * 155.11560 * 7 6 4 36 36 H 1.08998 * 109.47256 * 336.13400 * 8 6 4 37 37 H 1.09001 * 109.47117 * 216.13018 * 8 6 4 38 38 H 0.96699 * 114.00001 * 59.99988 * 11 9 8 39 39 H 1.09001 * 109.47211 * 299.99837 * 12 9 8 40 40 H 1.08999 * 109.46957 * 60.00253 * 12 9 8 41 41 H 1.08998 * 109.47056 * 94.88189 * 14 13 12 42 42 H 1.09003 * 109.47154 * 214.87760 * 14 13 12 43 43 H 1.09001 * 109.47071 * 334.87903 * 14 13 12 44 44 H 0.96998 * 120.00296 * 179.97438 * 18 17 15 45 45 H 1.08002 * 119.98569 * 0.02562 * 24 23 2 46 46 H 1.07990 * 119.97146 * 180.27912 * 25 24 23 47 47 H 1.07998 * 119.98417 * 179.74918 * 26 25 24 48 48 H 1.08001 * 120.01306 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5693 -1.7931 1.1289 6 7 1.8848 -0.1425 2.4439 7 6 2.4886 -0.7675 3.6234 8 6 1.1207 1.0996 2.5833 9 6 -0.3161 0.7712 2.9939 10 1 -0.7629 0.1076 2.2534 11 8 -0.3116 0.1271 4.2696 12 6 -1.1306 2.0637 3.0779 13 7 -2.5062 1.7492 3.4717 14 6 -2.8727 1.7151 4.8897 15 6 -3.4495 1.4872 2.5142 16 1 -3.1646 0.9957 1.5956 17 6 -4.7719 1.8533 2.7242 18 7 -5.1354 2.3740 3.8770 19 14 -6.0356 1.6067 1.3707 20 1 -6.1132 0.1652 1.0227 21 1 -7.3635 2.0749 1.8421 22 1 -5.6341 2.3847 0.1711 23 6 2.0323 -0.7104 -1.2304 24 6 1.7033 -2.0354 -1.4466 25 6 2.1592 -2.6856 -2.5780 26 6 2.9542 -2.0148 -3.4889 27 6 3.2891 -0.6919 -3.2721 28 6 2.8283 -0.0378 -2.1419 29 9 3.1555 1.2555 -1.9285 30 1 -0.3634 0.3507 -0.9659 31 1 -0.3633 -1.0119 0.1793 32 1 -0.3634 0.6611 0.7867 33 1 1.8169 -1.5323 4.0132 34 1 3.4383 -1.2251 3.3461 35 1 2.6598 -0.0101 4.3883 36 1 1.1142 1.6310 1.6317 37 1 1.5823 1.7264 3.3463 38 1 0.0727 0.6610 4.9783 39 1 -0.6838 2.7272 3.8184 40 1 -1.1340 2.5548 2.1049 41 1 -3.2839 2.6813 5.1820 42 1 -3.6192 0.9379 5.0535 43 1 -1.9875 1.5007 5.4886 44 1 -6.0594 2.6302 4.0236 45 1 1.0857 -2.5614 -0.7336 46 1 1.8979 -3.7194 -2.7482 47 1 3.3132 -2.5250 -4.3705 48 1 3.9098 -0.1681 -3.9841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332665438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:01 Heat of formation + Delta-G solvation = -92.985874 kcal Electronic energy + Delta-G solvation = -30671.892211 eV Core-core repulsion = 26448.748956 eV Total energy + Delta-G solvation = -4223.143255 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.94829 -41.60355 -39.77902 -38.92673 -36.82731 -35.85804 -35.33597 -33.27229 -31.50467 -31.34104 -30.37758 -28.27266 -27.78904 -27.01806 -25.41126 -23.79452 -23.66391 -22.66956 -22.25744 -20.09021 -18.78955 -18.70079 -18.17481 -17.78619 -17.24454 -16.99790 -16.75702 -16.64252 -16.52122 -16.35557 -16.01334 -15.37341 -15.17129 -15.11061 -14.76924 -14.61358 -14.49247 -14.13673 -14.07045 -13.71370 -13.43293 -13.25674 -13.19786 -13.01637 -12.97934 -12.92588 -12.74182 -12.62306 -12.51810 -12.19803 -12.16096 -11.99668 -11.93245 -11.86874 -11.62694 -11.23262 -10.82595 -10.55446 -9.90132 -9.66349 -9.60678 -8.50313 -7.80456 -5.36004 0.16029 0.28281 1.47125 1.47940 1.49915 1.54379 1.98907 2.51274 2.66421 3.23186 3.33088 3.35602 3.46565 3.61126 3.74455 3.80209 3.98566 4.08705 4.11119 4.16923 4.20675 4.38459 4.41969 4.45430 4.46739 4.58984 4.62393 4.69032 4.71833 4.76225 4.94179 4.96511 4.99556 5.04803 5.09494 5.15364 5.20662 5.26690 5.40378 5.45697 5.48108 5.53915 5.69639 5.80753 5.94535 6.28690 6.41606 7.04390 7.08062 7.22599 7.92636 8.39555 9.20883 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012049 B = 0.003403 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.285679 B = 8226.589058 C = 9606.825602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.067 4.067 3 H 0.116 0.884 4 C 0.515 3.485 5 O -0.570 6.570 6 N -0.601 5.601 7 C 0.095 3.905 8 C 0.076 3.924 9 C 0.073 3.927 10 H 0.077 0.923 11 O -0.563 6.563 12 C 0.121 3.879 13 N -0.610 5.610 14 C 0.185 3.815 15 C -0.265 4.265 16 H 0.065 0.935 17 C -0.043 4.043 18 N -0.935 5.935 19 Si 0.959 3.041 20 H -0.281 1.281 21 H -0.296 1.296 22 H -0.271 1.271 23 C -0.117 4.117 24 C -0.072 4.072 25 C -0.135 4.135 26 C -0.086 4.086 27 C -0.159 4.159 28 C 0.082 3.918 29 F -0.145 7.145 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.376 0.624 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.000 1.000 42 H 0.001 0.999 43 H 0.034 0.966 44 H 0.247 0.753 45 H 0.117 0.883 46 H 0.149 0.851 47 H 0.166 0.834 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.451 -3.875 -9.970 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 H 0.134 0.866 4 C 0.304 3.696 5 O -0.450 6.450 6 N -0.332 5.332 7 C -0.048 4.048 8 C -0.047 4.047 9 C 0.010 3.990 10 H 0.095 0.905 11 O -0.369 6.369 12 C -0.006 4.006 13 N -0.333 5.333 14 C 0.040 3.960 15 C -0.395 4.395 16 H 0.083 0.917 17 C -0.238 4.238 18 N -0.580 5.580 19 Si 0.787 3.213 20 H -0.207 1.207 21 H -0.222 1.222 22 H -0.197 1.197 23 C -0.119 4.119 24 C -0.090 4.090 25 C -0.153 4.153 26 C -0.104 4.104 27 C -0.177 4.177 28 C 0.063 3.937 29 F -0.124 7.124 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.224 0.776 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.135 0.865 46 H 0.167 0.833 47 H 0.183 0.817 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 19.307 -4.797 -10.241 22.375 hybrid contribution -0.984 0.521 0.152 1.124 sum 18.324 -4.275 -10.089 21.350 Atomic orbital electron populations 1.22099 0.90961 1.02928 1.04477 1.20159 0.98265 1.00545 0.89804 0.86625 1.20704 0.78391 0.85350 0.85173 1.90653 1.45552 1.21941 1.86815 1.47760 1.52253 1.26092 1.07110 1.21643 0.97202 0.98998 0.86908 1.22629 0.91480 0.85436 1.05168 1.23268 0.93534 0.96472 0.85680 0.90514 1.86641 1.85510 1.46184 1.18589 1.21559 0.84721 0.94229 1.00084 1.43819 1.05763 1.81552 1.02146 1.20496 0.94757 0.97116 0.83588 1.19353 0.89474 1.31771 0.98929 0.91732 1.25999 1.00306 0.98880 0.98642 1.70188 1.16673 1.47469 1.23710 0.85488 0.78286 0.77820 0.79740 1.20714 1.22183 1.19693 1.19492 1.00662 0.95744 0.95971 1.20941 0.98275 0.92755 0.97029 1.21525 0.98389 1.01513 0.93835 1.21403 0.95974 0.93129 0.99882 1.21410 1.02864 0.96543 0.96897 1.17757 0.99743 0.79014 0.97208 1.91448 1.91150 1.34833 1.94970 0.90239 0.93025 0.89977 0.93666 0.92318 0.88186 0.87971 0.86865 0.77643 0.91784 0.92175 0.98189 0.98041 0.94792 0.94341 0.86521 0.83278 0.81688 0.82549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 7.79 71.98 0.56 -3.24 16 2 C -0.07 -1.68 2.04 -12.29 -0.03 -1.71 16 3 H 0.12 2.60 6.10 -2.39 -0.01 2.59 16 4 C 0.52 14.87 6.86 87.66 0.60 15.47 16 5 O -0.57 -19.87 14.49 -3.05 -0.04 -19.92 16 6 N -0.60 -14.78 2.86 -846.74 -2.42 -17.20 16 7 C 0.09 2.08 9.55 127.77 1.22 3.30 16 8 C 0.08 1.60 4.62 86.38 0.40 2.00 16 9 C 0.07 2.13 2.58 30.60 0.08 2.21 16 10 H 0.08 2.71 5.73 -2.39 -0.01 2.70 16 11 O -0.56 -17.20 11.26 -148.98 -1.68 -18.88 16 12 C 0.12 4.14 5.32 86.38 0.46 4.60 16 13 N -0.61 -28.85 2.84 -726.91 -2.06 -30.92 16 14 C 0.19 8.94 8.65 127.77 1.11 10.05 16 15 C -0.26 -14.09 9.57 84.03 0.80 -13.29 16 16 H 0.07 3.33 7.83 -2.91 -0.02 3.31 16 17 C -0.04 -2.36 5.38 84.86 0.46 -1.90 16 18 N -0.93 -54.88 10.58 21.65 0.23 -54.65 16 19 Si 0.96 44.45 29.56 68.60 2.03 46.48 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 21 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 23 C -0.12 -3.01 4.49 -19.82 -0.09 -3.09 16 24 C -0.07 -1.78 7.93 22.26 0.18 -1.61 16 25 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 26 C -0.09 -1.35 10.04 22.26 0.22 -1.13 16 27 C -0.16 -2.89 10.03 22.31 0.22 -2.66 16 28 C 0.08 1.93 7.25 22.38 0.16 2.09 16 29 F -0.15 -3.52 16.19 44.97 0.73 -2.79 16 30 H 0.08 1.89 8.11 -2.39 -0.02 1.87 16 31 H 0.05 1.45 7.75 -2.39 -0.02 1.43 16 32 H 0.08 2.19 3.75 -2.39 -0.01 2.18 16 33 H 0.04 1.15 8.13 -2.39 -0.02 1.13 16 34 H 0.06 1.36 7.68 -2.39 -0.02 1.34 16 35 H 0.10 1.52 7.90 -2.39 -0.02 1.50 16 36 H 0.10 1.93 5.29 -2.39 -0.01 1.92 16 37 H 0.11 1.69 7.96 -2.39 -0.02 1.67 16 38 H 0.38 8.40 8.79 -74.06 -0.65 7.75 16 39 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 40 H 0.06 2.01 8.04 -2.39 -0.02 1.99 16 41 H 0.00 -0.01 7.27 -2.39 -0.02 -0.03 16 42 H 0.00 0.04 7.54 -2.39 -0.02 0.02 16 43 H 0.03 1.35 6.99 -2.39 -0.02 1.33 16 44 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 45 H 0.12 3.15 7.42 -2.91 -0.02 3.13 16 46 H 0.15 2.09 8.06 -2.92 -0.02 2.06 16 47 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 48 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -72.77 384.07 3.70 -69.08 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.33 Total: 20.03 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 6.58 Total: 8.77 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -4.25 Total: -102.77 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -1.72 Total: -38.80 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.73 Total: -2.79 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -72.77 3.70 -69.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332665438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.910 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds