Wall clock time and date at job start Tue Mar 31 2020 22:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46782 * 2 1 4 4 C 1.50692 * 109.47175 * 240.00010 * 2 1 3 5 5 O 1.21286 * 120.00413 * 239.99891 * 4 2 1 6 6 N 1.34781 * 120.00304 * 60.00044 * 4 2 1 7 7 C 1.46495 * 119.99757 * 359.97438 * 6 4 2 8 8 C 1.46503 * 120.00187 * 180.02562 * 6 4 2 9 9 C 1.53007 * 109.46770 * 269.99797 * 8 6 4 10 10 H 1.08999 * 109.47061 * 59.99952 * 9 8 6 11 11 O 1.42905 * 109.46721 * 299.99920 * 9 8 6 12 12 C 1.53000 * 109.46792 * 179.97438 * 9 8 6 13 13 N 1.46499 * 109.46964 * 184.99606 * 12 9 8 14 14 C 1.46504 * 120.00143 * 270.00335 * 13 12 9 15 15 C 1.36938 * 119.99755 * 90.00088 * 13 12 9 16 16 H 1.08001 * 119.99915 * 342.01390 * 15 13 12 17 17 C 1.38817 * 119.99930 * 161.74048 * 15 13 12 18 18 N 1.31618 * 119.99597 * 346.04174 * 17 15 13 19 19 Si 1.86795 * 119.99854 * 166.04246 * 17 15 13 20 20 H 1.48498 * 109.47014 * 60.00295 * 19 17 15 21 21 H 1.48500 * 109.46950 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47372 * 299.99778 * 19 17 15 23 23 C 1.50694 * 109.47342 * 119.99842 * 2 1 3 24 24 C 1.38220 * 120.01483 * 60.00155 * 23 2 1 25 25 C 1.38223 * 120.02905 * 179.97438 * 24 23 2 26 26 C 1.38272 * 120.05009 * 0.02562 * 25 24 23 27 27 C 1.38179 * 120.02339 * 359.97438 * 26 25 24 28 28 C 1.38446 * 120.01330 * 239.72966 * 23 2 1 29 29 F 1.35094 * 120.02622 * 359.97438 * 28 23 2 30 30 H 1.09006 * 109.47477 * 300.00102 * 1 2 3 31 31 H 1.09004 * 109.47574 * 60.00392 * 1 2 3 32 32 H 1.08995 * 109.47050 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47489 * 270.00476 * 7 6 4 34 34 H 1.09001 * 109.47124 * 30.00704 * 7 6 4 35 35 H 1.09005 * 109.47123 * 150.00274 * 7 6 4 36 36 H 1.08999 * 109.47368 * 149.99937 * 8 6 4 37 37 H 1.09005 * 109.47042 * 29.99346 * 8 6 4 38 38 H 0.96697 * 113.99797 * 299.99722 * 11 9 8 39 39 H 1.09001 * 109.47038 * 65.00349 * 12 9 8 40 40 H 1.08998 * 109.47347 * 305.00293 * 12 9 8 41 41 H 1.08996 * 109.46941 * 264.92590 * 14 13 12 42 42 H 1.08996 * 109.46831 * 24.92903 * 14 13 12 43 43 H 1.08998 * 109.47001 * 144.93111 * 14 13 12 44 44 H 0.97000 * 119.99826 * 179.97438 * 18 17 15 45 45 H 1.07997 * 119.98312 * 359.95345 * 24 23 2 46 46 H 1.08002 * 119.97777 * 179.97438 * 25 24 23 47 47 H 1.08000 * 119.98788 * 179.97438 * 26 25 24 48 48 H 1.08004 * 120.00769 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 0.8640 0.9408 -2.5890 8 6 2.1946 -0.9409 -3.6507 9 6 3.5427 -0.3490 -4.0674 10 1 4.2606 -0.4745 -3.2569 11 8 3.3842 1.0424 -4.3522 12 6 4.0525 -1.0710 -5.3162 13 7 5.3956 -0.5875 -5.6457 14 6 5.5618 0.5605 -6.5406 15 6 6.4956 -1.2085 -5.1171 16 1 6.3918 -1.8471 -4.2523 17 6 7.7433 -1.0218 -5.6962 18 7 7.8391 -0.4846 -6.8939 19 14 9.2862 -1.5330 -4.7756 20 1 9.2353 -2.9903 -4.4952 21 1 10.4804 -1.2303 -5.6047 22 1 9.3694 -0.7851 -3.4954 23 6 2.0323 -0.7103 1.2304 24 6 1.6987 -2.0336 1.4495 25 6 2.1597 -2.6856 2.5777 26 6 2.9548 -2.0149 3.4887 27 6 3.2896 -0.6919 3.2718 28 6 2.8329 -0.0394 2.1390 29 9 3.1647 1.2522 1.9230 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.1838 0.6426 -2.6225 34 1 1.0272 1.5996 -1.7361 35 1 1.1218 1.4664 -3.5085 36 1 1.4766 -0.8154 -4.4612 37 1 2.3155 -2.0022 -3.4334 38 1 2.7581 1.2291 -5.0650 39 1 3.3800 -0.8723 -6.1507 40 1 4.0889 -2.1437 -5.1264 41 1 5.7233 0.2069 -7.5589 42 1 4.6649 1.1789 -6.5086 43 1 6.4210 1.1496 -6.2200 44 1 8.7110 -0.3537 -7.2985 45 1 1.0772 -2.5583 0.7390 46 1 1.8982 -3.7195 2.7483 47 1 3.3141 -2.5252 4.3701 48 1 3.9103 -0.1681 3.9838 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332665439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:06 Heat of formation + Delta-G solvation = -70.303426 kcal Electronic energy + Delta-G solvation = -30257.490116 eV Core-core repulsion = 26035.330446 eV Total energy + Delta-G solvation = -4222.159671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.03175 -40.51189 -38.90218 -37.42072 -35.40931 -34.71830 -34.21188 -31.37719 -30.70176 -30.17821 -29.15178 -27.00776 -26.06112 -25.60718 -24.49562 -22.89295 -22.45557 -21.37533 -20.55810 -19.17882 -17.84775 -17.26908 -16.78638 -16.49284 -16.21111 -15.92543 -15.69402 -15.66726 -14.96237 -14.82333 -14.62780 -14.28568 -14.17635 -13.87057 -13.58025 -13.38845 -13.26831 -13.08451 -12.80089 -12.75502 -12.67675 -12.22728 -12.16574 -11.92608 -11.75963 -11.42219 -11.37261 -11.05972 -11.05443 -10.82546 -10.65578 -10.49749 -10.28639 -10.03568 -9.83940 -9.76045 -9.61081 -9.09821 -8.79684 -8.58167 -8.32061 -6.66872 -5.63855 -3.05791 0.98124 1.08279 2.65795 2.97278 3.46032 3.47238 3.50423 3.53963 4.10024 4.21530 4.40342 4.57047 4.61513 4.76722 4.87379 4.88023 4.92055 5.05802 5.10987 5.13945 5.18252 5.27616 5.34278 5.40565 5.51166 5.52963 5.60519 5.69312 5.80122 5.85190 5.88146 5.93595 5.97538 5.98809 6.06916 6.18023 6.25368 6.51696 6.63436 6.72575 6.81591 6.90035 7.37859 7.55201 7.78713 7.91235 8.17434 8.22217 8.46228 9.32547 9.95998 10.42305 11.40887 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011678 B = 0.003211 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.049649 B = 8717.210154 C =10130.409766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.073 4.073 3 H 0.108 0.892 4 C 0.518 3.482 5 O -0.527 6.527 6 N -0.604 5.604 7 C 0.079 3.921 8 C 0.084 3.916 9 C 0.069 3.931 10 H 0.098 0.902 11 O -0.549 6.549 12 C 0.128 3.872 13 N -0.595 5.595 14 C 0.171 3.829 15 C -0.252 4.252 16 H 0.068 0.932 17 C 0.000 4.000 18 N -0.911 5.911 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.285 1.285 23 C -0.098 4.098 24 C -0.057 4.057 25 C -0.132 4.132 26 C -0.092 4.092 27 C -0.157 4.157 28 C 0.105 3.895 29 F -0.138 7.138 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.356 0.644 39 H 0.038 0.962 40 H 0.055 0.945 41 H 0.022 0.978 42 H -0.001 1.001 43 H 0.044 0.956 44 H 0.251 0.749 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.131 0.869 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.507 1.362 16.345 26.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 H 0.126 0.874 4 C 0.305 3.695 5 O -0.403 6.403 6 N -0.336 5.336 7 C -0.064 4.064 8 C -0.039 4.039 9 C 0.006 3.994 10 H 0.116 0.884 11 O -0.352 6.352 12 C -0.001 4.001 13 N -0.316 5.316 14 C 0.027 3.973 15 C -0.382 4.382 16 H 0.086 0.914 17 C -0.198 4.198 18 N -0.557 5.557 19 Si 0.733 3.267 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.100 4.100 24 C -0.075 4.075 25 C -0.150 4.150 26 C -0.110 4.110 27 C -0.176 4.176 28 C 0.085 3.915 29 F -0.117 7.117 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.201 0.799 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.018 0.982 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.149 0.851 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.499 0.977 16.732 25.712 hybrid contribution 0.702 0.009 -0.048 0.703 sum -18.797 0.986 16.684 25.153 Atomic orbital electron populations 1.22049 0.91762 1.03282 1.03657 1.20175 0.97957 1.00696 0.90565 0.87426 1.20325 0.80362 0.84671 0.84175 1.90743 1.37070 1.26341 1.86161 1.47662 1.51203 1.29098 1.05674 1.21967 0.93460 0.87277 1.03728 1.22340 0.97063 0.98410 0.86107 1.23330 0.94029 0.81572 1.00458 0.88392 1.86666 1.66808 1.24501 1.57270 1.21271 0.88267 0.97100 0.93504 1.43762 0.99740 1.33132 1.55005 1.20750 0.95790 0.87470 0.93300 1.19194 0.86118 1.24999 1.07858 0.91432 1.24887 0.98087 1.00999 0.95785 1.70101 1.22874 1.49112 1.13574 0.86342 0.82828 0.78360 0.79126 1.20966 1.21628 1.21139 1.19354 0.99859 0.95361 0.95383 1.20806 0.97973 0.92479 0.96228 1.21179 0.98886 1.00317 0.94633 1.21001 0.97109 0.93450 0.99427 1.21084 1.02983 0.96092 0.97436 1.17529 0.98597 0.79191 0.96147 1.91482 1.90899 1.34544 1.94763 0.91336 0.90363 0.91839 0.92672 0.91114 0.90388 0.90629 0.89185 0.79907 0.94328 0.92715 0.95941 0.98249 0.93728 0.93837 0.85357 0.85368 0.85135 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.64 37.16 0.32 -0.86 16 2 C -0.07 -0.83 2.08 -92.93 -0.19 -1.02 16 3 H 0.11 1.23 6.39 -51.93 -0.33 0.90 16 4 C 0.52 7.50 6.95 -10.99 -0.08 7.43 16 5 O -0.53 -9.73 14.69 5.55 0.08 -9.65 16 6 N -0.60 -7.65 2.80 -181.57 -0.51 -8.16 16 7 C 0.08 0.69 8.54 59.84 0.51 1.20 16 8 C 0.08 1.16 5.10 -4.04 -0.02 1.14 16 9 C 0.07 1.24 3.48 -26.73 -0.09 1.15 16 10 H 0.10 2.22 8.14 -51.93 -0.42 1.80 16 11 O -0.55 -9.45 10.99 -35.23 -0.39 -9.84 16 12 C 0.13 2.60 5.30 -4.04 -0.02 2.58 16 13 N -0.59 -15.48 2.89 -181.12 -0.52 -16.01 16 14 C 0.17 4.39 8.74 59.85 0.52 4.91 16 15 C -0.25 -7.31 9.70 -15.06 -0.15 -7.46 16 16 H 0.07 1.95 7.87 -52.49 -0.41 1.53 16 17 C 0.00 0.00 5.10 -17.43 -0.09 -0.09 16 18 N -0.91 -27.58 10.49 55.49 0.58 -27.00 16 19 Si 0.90 23.13 29.58 -169.99 -5.03 18.10 16 20 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 23 C -0.10 -1.22 4.40 -104.56 -0.46 -1.68 16 24 C -0.06 -0.65 7.93 -39.59 -0.31 -0.96 16 25 C -0.13 -1.30 10.04 -39.57 -0.40 -1.69 16 26 C -0.09 -0.86 10.04 -39.59 -0.40 -1.26 16 27 C -0.16 -1.68 10.03 -39.51 -0.40 -2.08 16 28 C 0.10 1.33 7.25 -39.42 -0.29 1.04 16 29 F -0.14 -1.86 16.19 2.25 0.04 -1.83 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.50 4.53 -51.93 -0.24 0.26 16 32 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 33 H 0.05 0.35 6.95 -51.93 -0.36 -0.01 16 34 H 0.07 0.57 6.01 -51.93 -0.31 0.26 16 35 H 0.08 0.66 6.88 -51.93 -0.36 0.30 16 36 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.09 1.36 7.42 -51.93 -0.39 0.97 16 38 H 0.36 4.65 8.79 45.56 0.40 5.05 16 39 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 40 H 0.05 1.13 8.04 -51.93 -0.42 0.71 16 41 H 0.02 0.61 7.46 -51.93 -0.39 0.23 16 42 H 0.00 -0.02 7.22 -51.93 -0.37 -0.40 16 43 H 0.04 1.26 7.03 -51.93 -0.37 0.89 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.13 1.37 7.52 -52.49 -0.39 0.98 16 46 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 47 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 48 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 386.68 15.07 5.83 5.83 Total: -1.00 -35.90 386.68 -7.86 -43.76 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.41 Total: 2.43 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.54 Total: 2.35 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.45 Total: -51.17 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.31 Total: -19.48 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.03 Total: 18.10 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.90 -7.86 -43.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332665439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.542 kcal (2) G-P(sol) polarization free energy of solvation -35.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds