Wall clock time and date at job start Tue Mar 31 2020 22:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46782 * 2 1 4 4 C 1.50692 * 109.47175 * 240.00010 * 2 1 3 5 5 O 1.21286 * 120.00413 * 239.99891 * 4 2 1 6 6 N 1.34781 * 120.00304 * 60.00044 * 4 2 1 7 7 C 1.46495 * 119.99757 * 359.97438 * 6 4 2 8 8 C 1.46503 * 120.00187 * 180.02562 * 6 4 2 9 9 C 1.53007 * 109.46770 * 269.99797 * 8 6 4 10 10 H 1.08999 * 109.47061 * 59.99952 * 9 8 6 11 11 O 1.42905 * 109.46721 * 299.99920 * 9 8 6 12 12 C 1.53000 * 109.46792 * 179.97438 * 9 8 6 13 13 N 1.46499 * 109.46964 * 184.99606 * 12 9 8 14 14 C 1.46504 * 120.00143 * 270.00335 * 13 12 9 15 15 C 1.36938 * 119.99755 * 90.00088 * 13 12 9 16 16 H 1.08001 * 119.99915 * 342.01390 * 15 13 12 17 17 C 1.38817 * 119.99930 * 161.74048 * 15 13 12 18 18 N 1.31618 * 119.99597 * 346.04174 * 17 15 13 19 19 Si 1.86795 * 119.99854 * 166.04246 * 17 15 13 20 20 H 1.48498 * 109.47014 * 60.00295 * 19 17 15 21 21 H 1.48500 * 109.46950 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47372 * 299.99778 * 19 17 15 23 23 C 1.50694 * 109.47342 * 119.99842 * 2 1 3 24 24 C 1.38220 * 120.01483 * 60.00155 * 23 2 1 25 25 C 1.38223 * 120.02905 * 179.97438 * 24 23 2 26 26 C 1.38272 * 120.05009 * 0.02562 * 25 24 23 27 27 C 1.38179 * 120.02339 * 359.97438 * 26 25 24 28 28 C 1.38446 * 120.01330 * 239.72966 * 23 2 1 29 29 F 1.35094 * 120.02622 * 359.97438 * 28 23 2 30 30 H 1.09006 * 109.47477 * 300.00102 * 1 2 3 31 31 H 1.09004 * 109.47574 * 60.00392 * 1 2 3 32 32 H 1.08995 * 109.47050 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47489 * 270.00476 * 7 6 4 34 34 H 1.09001 * 109.47124 * 30.00704 * 7 6 4 35 35 H 1.09005 * 109.47123 * 150.00274 * 7 6 4 36 36 H 1.08999 * 109.47368 * 149.99937 * 8 6 4 37 37 H 1.09005 * 109.47042 * 29.99346 * 8 6 4 38 38 H 0.96697 * 113.99797 * 299.99722 * 11 9 8 39 39 H 1.09001 * 109.47038 * 65.00349 * 12 9 8 40 40 H 1.08998 * 109.47347 * 305.00293 * 12 9 8 41 41 H 1.08996 * 109.46941 * 264.92590 * 14 13 12 42 42 H 1.08996 * 109.46831 * 24.92903 * 14 13 12 43 43 H 1.08998 * 109.47001 * 144.93111 * 14 13 12 44 44 H 0.97000 * 119.99826 * 179.97438 * 18 17 15 45 45 H 1.07997 * 119.98312 * 359.95345 * 24 23 2 46 46 H 1.08002 * 119.97777 * 179.97438 * 25 24 23 47 47 H 1.08000 * 119.98788 * 179.97438 * 26 25 24 48 48 H 1.08004 * 120.00769 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 0.8640 0.9408 -2.5890 8 6 2.1946 -0.9409 -3.6507 9 6 3.5427 -0.3490 -4.0674 10 1 4.2606 -0.4745 -3.2569 11 8 3.3842 1.0424 -4.3522 12 6 4.0525 -1.0710 -5.3162 13 7 5.3956 -0.5875 -5.6457 14 6 5.5618 0.5605 -6.5406 15 6 6.4956 -1.2085 -5.1171 16 1 6.3918 -1.8471 -4.2523 17 6 7.7433 -1.0218 -5.6962 18 7 7.8391 -0.4846 -6.8939 19 14 9.2862 -1.5330 -4.7756 20 1 9.2353 -2.9903 -4.4952 21 1 10.4804 -1.2303 -5.6047 22 1 9.3694 -0.7851 -3.4954 23 6 2.0323 -0.7103 1.2304 24 6 1.6987 -2.0336 1.4495 25 6 2.1597 -2.6856 2.5777 26 6 2.9548 -2.0149 3.4887 27 6 3.2896 -0.6919 3.2718 28 6 2.8329 -0.0394 2.1390 29 9 3.1647 1.2522 1.9230 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.1838 0.6426 -2.6225 34 1 1.0272 1.5996 -1.7361 35 1 1.1218 1.4664 -3.5085 36 1 1.4766 -0.8154 -4.4612 37 1 2.3155 -2.0022 -3.4334 38 1 2.7581 1.2291 -5.0650 39 1 3.3800 -0.8723 -6.1507 40 1 4.0889 -2.1437 -5.1264 41 1 5.7233 0.2069 -7.5589 42 1 4.6649 1.1789 -6.5086 43 1 6.4210 1.1496 -6.2200 44 1 8.7110 -0.3537 -7.2985 45 1 1.0772 -2.5583 0.7390 46 1 1.8982 -3.7195 2.7483 47 1 3.3141 -2.5252 4.3701 48 1 3.9103 -0.1681 3.9838 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332665439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:05 Heat of formation + Delta-G solvation = -94.493690 kcal Electronic energy + Delta-G solvation = -30258.539085 eV Core-core repulsion = 26035.330446 eV Total energy + Delta-G solvation = -4223.208639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.98967 -41.52515 -39.82930 -38.85219 -36.90652 -36.14951 -35.17896 -33.33938 -31.58503 -31.38225 -30.20727 -28.08427 -27.83490 -27.19437 -25.41052 -24.03968 -23.62169 -22.53147 -22.24080 -20.19546 -18.85343 -18.71495 -18.17035 -17.67592 -17.22215 -17.14427 -16.82348 -16.64529 -16.59676 -16.26196 -15.95269 -15.46766 -15.21872 -15.10999 -14.77783 -14.71661 -14.48035 -14.22512 -14.07248 -13.74383 -13.63144 -13.43600 -13.05225 -13.02574 -12.92272 -12.85766 -12.75983 -12.57529 -12.42870 -12.22711 -12.15413 -12.04365 -11.98806 -11.87173 -11.81219 -11.34364 -10.78769 -10.61676 -9.91183 -9.66318 -9.57323 -8.74161 -7.85548 -5.29259 0.14934 0.26249 1.39092 1.42302 1.49104 1.57488 2.00537 2.46941 2.65070 3.24704 3.25404 3.38052 3.53418 3.55666 3.69867 3.81674 3.99965 4.10732 4.12506 4.17081 4.18930 4.32731 4.38095 4.41730 4.48623 4.52991 4.64492 4.75549 4.78501 4.87114 4.90762 4.91077 4.96015 5.01212 5.06544 5.15515 5.21989 5.26140 5.38401 5.42409 5.45924 5.54270 5.56022 5.73329 5.93147 6.28240 6.37664 7.00988 7.13146 7.14934 7.87557 8.26328 9.16315 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011678 B = 0.003211 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.049649 B = 8717.210154 C =10130.409766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 H 0.104 0.896 4 C 0.509 3.491 5 O -0.578 6.578 6 N -0.602 5.602 7 C 0.069 3.931 8 C 0.095 3.905 9 C 0.091 3.909 10 H 0.042 0.958 11 O -0.561 6.561 12 C 0.124 3.876 13 N -0.614 5.614 14 C 0.188 3.812 15 C -0.264 4.264 16 H 0.059 0.941 17 C -0.052 4.052 18 N -0.936 5.936 19 Si 0.962 3.038 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.288 1.288 23 C -0.116 4.116 24 C -0.071 4.071 25 C -0.133 4.133 26 C -0.090 4.090 27 C -0.163 4.163 28 C 0.073 3.927 29 F -0.151 7.151 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.074 0.926 38 H 0.379 0.621 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.000 1.000 42 H 0.039 0.961 43 H 0.008 0.992 44 H 0.249 0.751 45 H 0.130 0.870 46 H 0.154 0.846 47 H 0.163 0.837 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.820 1.360 17.177 28.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 H 0.122 0.878 4 C 0.297 3.703 5 O -0.457 6.457 6 N -0.333 5.333 7 C -0.072 4.072 8 C -0.029 4.029 9 C 0.028 3.972 10 H 0.060 0.940 11 O -0.367 6.367 12 C -0.003 4.003 13 N -0.337 5.337 14 C 0.043 3.957 15 C -0.394 4.394 16 H 0.077 0.923 17 C -0.247 4.247 18 N -0.584 5.584 19 Si 0.790 3.210 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.214 1.214 23 C -0.117 4.117 24 C -0.089 4.089 25 C -0.151 4.151 26 C -0.108 4.108 27 C -0.182 4.182 28 C 0.054 3.946 29 F -0.129 7.129 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.138 0.862 37 H 0.092 0.908 38 H 0.227 0.773 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.018 0.982 42 H 0.057 0.943 43 H 0.026 0.974 44 H 0.058 0.942 45 H 0.147 0.853 46 H 0.171 0.829 47 H 0.181 0.819 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -21.886 1.002 17.561 28.078 hybrid contribution 1.350 0.021 -0.286 1.381 sum -20.535 1.022 17.274 26.854 Atomic orbital electron populations 1.22050 0.88838 1.03857 1.05188 1.20186 1.00275 0.99616 0.88773 0.87850 1.20941 0.79607 0.84237 0.85483 1.90709 1.39329 1.28697 1.86987 1.47765 1.50921 1.29896 1.04712 1.22289 0.94525 0.85914 1.04462 1.22119 0.95679 0.97202 0.87889 1.22725 0.95158 0.82035 0.97271 0.93983 1.86620 1.67949 1.23648 1.58511 1.21515 0.86335 0.96846 0.95623 1.43994 1.01220 1.33387 1.55082 1.20471 0.96066 0.87363 0.91777 1.19424 0.87683 1.24721 1.07575 0.92343 1.25595 1.00668 1.01775 0.96651 1.70240 1.23086 1.50379 1.14654 0.85425 0.79610 0.78282 0.77702 1.20060 1.21160 1.21429 1.19581 1.00282 0.96043 0.95782 1.20968 0.98587 0.92330 0.97036 1.21563 0.98112 1.01476 0.93923 1.21402 0.96255 0.92909 1.00232 1.21406 1.02846 0.96849 0.97093 1.17891 1.00014 0.79166 0.97560 1.91439 1.91180 1.35333 1.94977 0.90132 0.88459 0.91712 0.89294 0.90525 0.89586 0.86236 0.90801 0.77273 0.90877 0.93540 0.98189 0.94273 0.97353 0.94221 0.85251 0.82855 0.81939 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.64 71.98 0.62 -1.33 16 2 C -0.07 -1.51 2.08 -12.29 -0.03 -1.54 16 3 H 0.10 2.36 6.39 -2.39 -0.02 2.35 16 4 C 0.51 14.71 6.95 87.65 0.61 15.32 16 5 O -0.58 -22.06 14.69 -3.05 -0.04 -22.10 16 6 N -0.60 -14.29 2.80 -846.73 -2.37 -16.65 16 7 C 0.07 0.99 8.54 127.77 1.09 2.08 16 8 C 0.09 2.46 5.10 86.38 0.44 2.90 16 9 C 0.09 3.23 3.48 30.60 0.11 3.33 16 10 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 11 O -0.56 -18.22 10.99 -148.98 -1.64 -19.86 16 12 C 0.12 4.95 5.30 86.38 0.46 5.41 16 13 N -0.61 -32.23 2.89 -726.94 -2.10 -34.34 16 14 C 0.19 9.65 8.74 127.77 1.12 10.77 16 15 C -0.26 -15.65 9.70 84.03 0.81 -14.83 16 16 H 0.06 3.49 7.87 -2.91 -0.02 3.47 16 17 C -0.05 -3.11 5.10 84.86 0.43 -2.68 16 18 N -0.94 -57.87 10.49 21.65 0.23 -57.65 16 19 Si 0.96 48.48 29.58 68.60 2.03 50.51 16 20 H -0.27 -13.36 7.11 99.48 0.71 -12.66 16 21 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 22 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 23 C -0.12 -2.89 4.40 -19.82 -0.09 -2.98 16 24 C -0.07 -1.60 7.93 22.26 0.18 -1.43 16 25 C -0.13 -2.43 10.04 22.27 0.22 -2.21 16 26 C -0.09 -1.54 10.04 22.26 0.22 -1.32 16 27 C -0.16 -3.39 10.03 22.31 0.22 -3.17 16 28 C 0.07 1.88 7.25 22.38 0.16 2.04 16 29 F -0.15 -4.19 16.19 44.97 0.73 -3.46 16 30 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.10 0.92 4.53 -2.39 -0.01 0.91 16 32 H 0.06 0.88 7.39 -2.39 -0.02 0.87 16 33 H 0.09 0.72 6.95 -2.39 -0.02 0.70 16 34 H 0.08 1.03 6.01 -2.39 -0.01 1.02 16 35 H 0.09 1.12 6.88 -2.38 -0.02 1.11 16 36 H 0.12 2.08 8.07 -2.39 -0.02 2.06 16 37 H 0.07 2.20 7.42 -2.38 -0.02 2.18 16 38 H 0.38 8.46 8.79 -74.06 -0.65 7.81 16 39 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 40 H 0.05 1.92 8.04 -2.39 -0.02 1.90 16 41 H 0.00 -0.01 7.46 -2.39 -0.02 -0.03 16 42 H 0.04 1.65 7.22 -2.39 -0.02 1.63 16 43 H 0.01 0.45 7.03 -2.39 -0.02 0.43 16 44 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 45 H 0.13 2.77 7.52 -2.91 -0.02 2.75 16 46 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 47 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 48 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -82.25 386.68 3.75 -78.50 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.33 Total: 14.69 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.59 Total: 10.36 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -4.24 Total: -108.64 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -1.68 Total: -41.96 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.73 Total: -3.46 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Total: -82.25 3.75 -78.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332665439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.992 kcal (2) G-P(sol) polarization free energy of solvation -82.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds