Wall clock time and date at job start Tue Mar 31 2020 22:14:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09006 * 109.47214 * 2 1
4 4 C 1.50702 * 109.47781 * 239.99915 * 2 1 3
5 5 O 1.21274 * 120.00046 * 240.00578 * 4 2 1
6 6 N 1.34776 * 119.99750 * 59.99783 * 4 2 1
7 7 C 1.46502 * 120.00091 * 0.02562 * 6 4 2
8 8 C 1.46497 * 120.00159 * 180.02562 * 6 4 2
9 9 C 1.53002 * 109.47403 * 89.99776 * 8 6 4
10 10 H 1.09001 * 109.47254 * 305.00338 * 9 8 6
11 11 O 1.42904 * 109.46812 * 65.00339 * 9 8 6
12 12 C 1.53000 * 109.47394 * 185.00181 * 9 8 6
13 13 N 1.46492 * 109.47108 * 180.02562 * 12 9 8
14 14 C 1.46500 * 120.00210 * 90.00308 * 13 12 9
15 15 C 1.36945 * 119.99943 * 269.99571 * 13 12 9
16 16 H 1.07996 * 119.99615 * 23.19524 * 15 13 12
17 17 C 1.38810 * 120.00080 * 203.19096 * 15 13 12
18 18 N 1.31622 * 120.00098 * 13.70939 * 17 15 13
19 19 Si 1.86801 * 119.99774 * 193.71349 * 17 15 13
20 20 H 1.48497 * 109.47375 * 89.99926 * 19 17 15
21 21 H 1.48499 * 109.46906 * 209.99984 * 19 17 15
22 22 H 1.48496 * 109.47355 * 329.99889 * 19 17 15
23 23 C 1.50707 * 109.47015 * 119.99838 * 2 1 3
24 24 C 1.38214 * 120.01202 * 60.00090 * 23 2 1
25 25 C 1.38218 * 120.02643 * 179.97438 * 24 23 2
26 26 C 1.38270 * 120.05111 * 0.02948 * 25 24 23
27 27 C 1.38175 * 120.02549 * 359.97438 * 26 25 24
28 28 C 1.38436 * 120.00918 * 239.72371 * 23 2 1
29 29 F 1.35096 * 120.03006 * 0.02562 * 28 23 2
30 30 H 1.08995 * 109.47309 * 300.00395 * 1 2 3
31 31 H 1.09004 * 109.46961 * 60.00008 * 1 2 3
32 32 H 1.09001 * 109.47022 * 179.97438 * 1 2 3
33 33 H 1.08997 * 109.47732 * 270.00261 * 7 6 4
34 34 H 1.09009 * 109.47080 * 30.00104 * 7 6 4
35 35 H 1.09000 * 109.47286 * 149.99900 * 7 6 4
36 36 H 1.08997 * 109.47172 * 330.00031 * 8 6 4
37 37 H 1.08999 * 109.47308 * 210.00198 * 8 6 4
38 38 H 0.96701 * 114.00241 * 59.99982 * 11 9 8
39 39 H 1.09001 * 109.47048 * 300.00283 * 12 9 8
40 40 H 1.08997 * 109.47056 * 59.99965 * 12 9 8
41 41 H 1.09003 * 109.47320 * 95.15739 * 14 13 12
42 42 H 1.09001 * 109.46937 * 215.15811 * 14 13 12
43 43 H 1.09003 * 109.46950 * 335.15247 * 14 13 12
44 44 H 0.97000 * 119.99802 * 180.02562 * 18 17 15
45 45 H 1.08001 * 119.98591 * 359.96161 * 24 23 2
46 46 H 1.07997 * 119.97882 * 179.97438 * 25 24 23
47 47 H 1.08001 * 119.98826 * 179.97438 * 26 25 24
48 48 H 1.07998 * 120.01634 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0325 -0.7104 -1.2304
5 8 2.7296 -1.6965 -1.1191
6 7 1.7069 -0.2500 -2.4545
7 6 0.8650 0.9414 -2.5890
8 6 2.1949 -0.9408 -3.6507
9 6 1.1867 -2.0138 -4.0669
10 1 0.9984 -2.6812 -3.2260
11 8 -0.0364 -1.3901 -4.4632
12 6 1.7524 -2.8178 -5.2393
13 7 0.7869 -3.8448 -5.6382
14 6 -0.2262 -3.5432 -6.6526
15 6 0.8314 -5.0867 -5.0630
16 1 1.2891 -5.2166 -4.0935
17 6 0.2882 -6.1786 -5.7260
18 7 -0.0229 -6.0859 -7.0016
19 14 -0.0014 -7.7794 -4.8079
20 1 -1.3648 -7.7731 -4.2196
21 1 0.1259 -8.9203 -5.7500
22 1 1.0046 -7.9176 -3.7244
23 6 2.0323 -0.7104 1.2305
24 6 1.6985 -2.0336 1.4495
25 6 2.1595 -2.6856 2.5777
26 6 2.9544 -2.0149 3.4888
27 6 3.2893 -0.6920 3.2721
28 6 2.8329 -0.0395 2.1390
29 9 3.1639 1.2524 1.9234
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 -0.1831 0.6440 -2.6222
34 1 1.0288 1.6003 -1.7361
35 1 1.1229 1.4667 -3.5086
36 1 3.1549 -1.4090 -3.4336
37 1 2.3162 -0.2222 -4.4612
38 1 0.0562 -0.7810 -5.2086
39 1 1.9407 -2.1504 -6.0803
40 1 2.6854 -3.2935 -4.9371
41 1 0.1290 -3.8710 -7.6296
42 1 -1.1514 -4.0652 -6.4084
43 1 -0.4101 -2.4690 -6.6743
44 1 -0.4028 -6.8488 -7.4648
45 1 1.0771 -2.5583 0.7389
46 1 1.8979 -3.7195 2.7483
47 1 3.3137 -2.5252 4.3703
48 1 3.9099 -0.1682 3.9840
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001332665440.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:14:10
Heat of formation + Delta-G solvation = -72.450075 kcal
Electronic energy + Delta-G solvation = -30276.536733 eV
Core-core repulsion = 26054.283977 eV
Total energy + Delta-G solvation = -4222.252756 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-49.09937 -40.50989 -38.89709 -37.41135 -35.41593 -34.68533 -34.21337 -31.36805
-30.69411 -30.18052 -29.14936 -27.01418 -26.06598 -25.59622 -24.47615 -22.89621
-22.44823 -21.41353 -20.57565 -19.14575 -17.87445 -17.27012 -16.81043 -16.51792
-16.20888 -15.92279 -15.72605 -15.53545 -15.04882 -14.81882 -14.65234 -14.33697
-14.20291 -13.73033 -13.50703 -13.39527 -13.24991 -13.17372 -12.85917 -12.74595
-12.62091 -12.19419 -12.13586 -11.90841 -11.83784 -11.37733 -11.34955 -11.10524
-11.02426 -10.84041 -10.65235 -10.49143 -10.33936 -10.03628 -9.84093 -9.79069
-9.61810 -9.09159 -8.80936 -8.60961 -8.33956 -6.62881 -5.65908 -3.12433
0.97650 1.08606 2.64223 2.97886 3.43071 3.48038 3.48964 3.50926
4.06365 4.23293 4.40061 4.54783 4.60694 4.76050 4.91049 4.92295
4.95663 5.01195 5.12263 5.17923 5.21235 5.29225 5.39327 5.43703
5.49261 5.54342 5.66835 5.72650 5.84108 5.88935 5.89783 5.94301
5.97259 6.00552 6.05311 6.21104 6.29158 6.52065 6.65064 6.72756
6.79086 6.86554 7.37157 7.46980 7.77902 7.87572 8.17845 8.21358
8.46359 9.30281 9.93252 10.41902 11.38100
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.013212 B = 0.003092 C = 0.002648
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2118.774718 B = 9052.261969 C =10572.831386
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.071 4.071
3 H 0.105 0.895
4 C 0.517 3.483
5 O -0.528 6.528
6 N -0.605 5.605
7 C 0.078 3.922
8 C 0.084 3.916
9 C 0.072 3.928
10 H 0.096 0.904
11 O -0.549 6.549
12 C 0.126 3.874
13 N -0.592 5.592
14 C 0.170 3.830
15 C -0.253 4.253
16 H 0.066 0.934
17 C 0.002 3.998
18 N -0.908 5.908
19 Si 0.903 3.097
20 H -0.288 1.288
21 H -0.291 1.291
22 H -0.279 1.279
23 C -0.098 4.098
24 C -0.055 4.055
25 C -0.129 4.129
26 C -0.092 4.092
27 C -0.159 4.159
28 C 0.101 3.899
29 F -0.141 7.141
30 H 0.067 0.933
31 H 0.080 0.920
32 H 0.066 0.934
33 H 0.068 0.932
34 H 0.067 0.933
35 H 0.068 0.932
36 H 0.089 0.911
37 H 0.075 0.925
38 H 0.357 0.643
39 H 0.037 0.963
40 H 0.055 0.945
41 H 0.026 0.974
42 H 0.037 0.963
43 H 0.000 1.000
44 H 0.251 0.749
45 H 0.132 0.868
46 H 0.130 0.870
47 H 0.131 0.869
48 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.956 17.651 16.498 24.341
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.092 4.092
3 H 0.123 0.877
4 C 0.304 3.696
5 O -0.403 6.403
6 N -0.337 5.337
7 C -0.065 4.065
8 C -0.039 4.039
9 C 0.009 3.991
10 H 0.114 0.886
11 O -0.352 6.352
12 C -0.003 4.003
13 N -0.313 5.313
14 C 0.025 3.975
15 C -0.383 4.383
16 H 0.084 0.916
17 C -0.196 4.196
18 N -0.553 5.553
19 Si 0.733 3.267
20 H -0.215 1.215
21 H -0.218 1.218
22 H -0.204 1.204
23 C -0.099 4.099
24 C -0.073 4.073
25 C -0.147 4.147
26 C -0.110 4.110
27 C -0.177 4.177
28 C 0.081 3.919
29 F -0.120 7.120
30 H 0.086 0.914
31 H 0.098 0.902
32 H 0.085 0.915
33 H 0.087 0.913
34 H 0.086 0.914
35 H 0.087 0.913
36 H 0.108 0.892
37 H 0.093 0.907
38 H 0.202 0.798
39 H 0.056 0.944
40 H 0.074 0.926
41 H 0.044 0.956
42 H 0.056 0.944
43 H 0.019 0.981
44 H 0.061 0.939
45 H 0.150 0.850
46 H 0.148 0.852
47 H 0.149 0.851
48 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges 3.034 16.664 16.887 23.918
hybrid contribution 0.139 -0.304 -0.091 0.346
sum 3.173 16.361 16.796 23.661
Atomic orbital electron populations
1.22058 0.91444 1.03832 1.03603 1.20174 0.98278 1.00227 0.90515
0.87720 1.20335 0.80373 0.84710 0.84170 1.90740 1.37611 1.25822
1.86162 1.47680 1.51239 1.29112 1.05698 1.21981 0.95547 0.86693
1.02251 1.22383 0.99576 0.95920 0.86069 1.23254 0.84031 0.92181
0.99661 0.88590 1.86633 1.32729 1.62569 1.53298 1.21282 0.93246
0.91815 0.93948 1.43696 1.32433 1.08862 1.46357 1.20730 0.91903
0.92880 0.91963 1.19190 1.35650 0.84229 0.99187 0.91619 1.24989
1.01872 0.97578 0.95183 1.70078 1.47442 1.30189 1.07588 0.86269
0.78226 0.83303 0.78885 1.21533 1.21775 1.20443 1.19361 0.99740
0.95355 0.95474 1.20909 0.97589 0.92509 0.96260 1.21230 0.98533
1.00502 0.94474 1.21007 0.97184 0.93461 0.99393 1.21046 1.03248
0.96080 0.97369 1.17494 0.99039 0.79012 0.96321 1.91457 1.91016
1.34695 1.94826 0.91417 0.90185 0.91503 0.91316 0.91446 0.91278
0.89228 0.90658 0.79790 0.94440 0.92644 0.95579 0.94426 0.98141
0.93859 0.85036 0.85213 0.85144 0.84905
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.44 8.64 37.16 0.32 -1.12 16
2 C -0.07 -0.80 2.08 -92.92 -0.19 -0.99 16
3 H 0.10 1.05 6.39 -51.93 -0.33 0.72 16
4 C 0.52 7.43 6.95 -10.98 -0.08 7.36 16
5 O -0.53 -9.64 14.69 5.56 0.08 -9.56 16
6 N -0.60 -7.63 2.84 -181.57 -0.52 -8.15 16
7 C 0.08 0.69 8.45 59.85 0.51 1.19 16
8 C 0.08 1.15 5.11 -4.04 -0.02 1.13 16
9 C 0.07 1.25 3.48 -26.73 -0.09 1.16 16
10 H 0.10 2.06 8.14 -51.93 -0.42 1.63 16
11 O -0.55 -9.17 11.70 -35.23 -0.41 -9.58 16
12 C 0.13 2.55 5.34 -4.05 -0.02 2.53 16
13 N -0.59 -15.14 2.84 -181.12 -0.51 -15.65 16
14 C 0.17 4.25 8.66 59.85 0.52 4.77 16
15 C -0.25 -7.21 9.65 -15.06 -0.15 -7.36 16
16 H 0.07 1.87 7.87 -52.49 -0.41 1.46 16
17 C 0.00 0.05 5.09 -17.43 -0.09 -0.04 16
18 N -0.91 -27.17 10.76 55.49 0.60 -26.57 16
19 Si 0.90 22.65 29.58 -169.99 -5.03 17.62 16
20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
23 C -0.10 -1.21 4.40 -104.55 -0.46 -1.67 16
24 C -0.05 -0.68 7.93 -39.60 -0.31 -0.99 16
25 C -0.13 -1.36 10.04 -39.58 -0.40 -1.76 16
26 C -0.09 -0.86 10.04 -39.59 -0.40 -1.26 16
27 C -0.16 -1.58 10.03 -39.51 -0.40 -1.98 16
28 C 0.10 1.18 7.25 -39.42 -0.29 0.90 16
29 F -0.14 -1.66 16.19 2.25 0.04 -1.62 16
30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
31 H 0.08 0.67 4.53 -51.93 -0.24 0.43 16
32 H 0.07 0.72 7.39 -51.93 -0.38 0.33 16
33 H 0.07 0.63 6.95 -51.93 -0.36 0.26 16
34 H 0.07 0.47 6.01 -51.92 -0.31 0.16 16
35 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16
36 H 0.09 1.37 7.42 -51.93 -0.39 0.98 16
37 H 0.08 0.83 7.89 -51.93 -0.41 0.42 16
38 H 0.36 4.66 8.79 45.56 0.40 5.06 16
39 H 0.04 0.67 8.07 -51.93 -0.42 0.26 16
40 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16
41 H 0.03 0.70 7.33 -51.93 -0.38 0.32 16
42 H 0.04 1.03 7.37 -51.93 -0.38 0.65 16
43 H 0.00 0.00 7.00 -51.93 -0.36 -0.36 16
44 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16
45 H 0.13 1.72 7.52 -52.49 -0.39 1.32 16
46 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16
47 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16
48 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16
LS Contribution 388.29 15.07 5.85 5.85
Total: -1.00 -34.82 388.29 -7.90 -42.72
By element:
Atomic # 1 Polarization: 9.52 SS G_CDS: -6.45 Total: 3.07 kcal
Atomic # 6 Polarization: 3.41 SS G_CDS: -1.55 Total: 1.87 kcal
Atomic # 7 Polarization: -49.94 SS G_CDS: -0.43 Total: -50.37 kcal
Atomic # 8 Polarization: -18.81 SS G_CDS: -0.33 Total: -19.14 kcal
Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal
Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -34.82 -7.90 -42.72 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001332665440.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.734 kcal
(2) G-P(sol) polarization free energy of solvation -34.820 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.554 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.450 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds