Wall clock time and date at job start Tue Mar 31 2020 22:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47214 * 2 1 4 4 C 1.50702 * 109.47781 * 239.99915 * 2 1 3 5 5 O 1.21274 * 120.00046 * 240.00578 * 4 2 1 6 6 N 1.34776 * 119.99750 * 59.99783 * 4 2 1 7 7 C 1.46502 * 120.00091 * 0.02562 * 6 4 2 8 8 C 1.46497 * 120.00159 * 180.02562 * 6 4 2 9 9 C 1.53002 * 109.47403 * 89.99776 * 8 6 4 10 10 H 1.09001 * 109.47254 * 305.00338 * 9 8 6 11 11 O 1.42904 * 109.46812 * 65.00339 * 9 8 6 12 12 C 1.53000 * 109.47394 * 185.00181 * 9 8 6 13 13 N 1.46492 * 109.47108 * 180.02562 * 12 9 8 14 14 C 1.46500 * 120.00210 * 90.00308 * 13 12 9 15 15 C 1.36945 * 119.99943 * 269.99571 * 13 12 9 16 16 H 1.07996 * 119.99615 * 23.19524 * 15 13 12 17 17 C 1.38810 * 120.00080 * 203.19096 * 15 13 12 18 18 N 1.31622 * 120.00098 * 13.70939 * 17 15 13 19 19 Si 1.86801 * 119.99774 * 193.71349 * 17 15 13 20 20 H 1.48497 * 109.47375 * 89.99926 * 19 17 15 21 21 H 1.48499 * 109.46906 * 209.99984 * 19 17 15 22 22 H 1.48496 * 109.47355 * 329.99889 * 19 17 15 23 23 C 1.50707 * 109.47015 * 119.99838 * 2 1 3 24 24 C 1.38214 * 120.01202 * 60.00090 * 23 2 1 25 25 C 1.38218 * 120.02643 * 179.97438 * 24 23 2 26 26 C 1.38270 * 120.05111 * 0.02948 * 25 24 23 27 27 C 1.38175 * 120.02549 * 359.97438 * 26 25 24 28 28 C 1.38436 * 120.00918 * 239.72371 * 23 2 1 29 29 F 1.35096 * 120.03006 * 0.02562 * 28 23 2 30 30 H 1.08995 * 109.47309 * 300.00395 * 1 2 3 31 31 H 1.09004 * 109.46961 * 60.00008 * 1 2 3 32 32 H 1.09001 * 109.47022 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47732 * 270.00261 * 7 6 4 34 34 H 1.09009 * 109.47080 * 30.00104 * 7 6 4 35 35 H 1.09000 * 109.47286 * 149.99900 * 7 6 4 36 36 H 1.08997 * 109.47172 * 330.00031 * 8 6 4 37 37 H 1.08999 * 109.47308 * 210.00198 * 8 6 4 38 38 H 0.96701 * 114.00241 * 59.99982 * 11 9 8 39 39 H 1.09001 * 109.47048 * 300.00283 * 12 9 8 40 40 H 1.08997 * 109.47056 * 59.99965 * 12 9 8 41 41 H 1.09003 * 109.47320 * 95.15739 * 14 13 12 42 42 H 1.09001 * 109.46937 * 215.15811 * 14 13 12 43 43 H 1.09003 * 109.46950 * 335.15247 * 14 13 12 44 44 H 0.97000 * 119.99802 * 180.02562 * 18 17 15 45 45 H 1.08001 * 119.98591 * 359.96161 * 24 23 2 46 46 H 1.07997 * 119.97882 * 179.97438 * 25 24 23 47 47 H 1.08001 * 119.98826 * 179.97438 * 26 25 24 48 48 H 1.07998 * 120.01634 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7069 -0.2500 -2.4545 7 6 0.8650 0.9414 -2.5890 8 6 2.1949 -0.9408 -3.6507 9 6 1.1867 -2.0138 -4.0669 10 1 0.9984 -2.6812 -3.2260 11 8 -0.0364 -1.3901 -4.4632 12 6 1.7524 -2.8178 -5.2393 13 7 0.7869 -3.8448 -5.6382 14 6 -0.2262 -3.5432 -6.6526 15 6 0.8314 -5.0867 -5.0630 16 1 1.2891 -5.2166 -4.0935 17 6 0.2882 -6.1786 -5.7260 18 7 -0.0229 -6.0859 -7.0016 19 14 -0.0014 -7.7794 -4.8079 20 1 -1.3648 -7.7731 -4.2196 21 1 0.1259 -8.9203 -5.7500 22 1 1.0046 -7.9176 -3.7244 23 6 2.0323 -0.7104 1.2305 24 6 1.6985 -2.0336 1.4495 25 6 2.1595 -2.6856 2.5777 26 6 2.9544 -2.0149 3.4888 27 6 3.2893 -0.6920 3.2721 28 6 2.8329 -0.0395 2.1390 29 9 3.1639 1.2524 1.9234 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.1831 0.6440 -2.6222 34 1 1.0288 1.6003 -1.7361 35 1 1.1229 1.4667 -3.5086 36 1 3.1549 -1.4090 -3.4336 37 1 2.3162 -0.2222 -4.4612 38 1 0.0562 -0.7810 -5.2086 39 1 1.9407 -2.1504 -6.0803 40 1 2.6854 -3.2935 -4.9371 41 1 0.1290 -3.8710 -7.6296 42 1 -1.1514 -4.0652 -6.4084 43 1 -0.4101 -2.4690 -6.6743 44 1 -0.4028 -6.8488 -7.4648 45 1 1.0771 -2.5583 0.7389 46 1 1.8979 -3.7195 2.7483 47 1 3.3137 -2.5252 4.3703 48 1 3.9099 -0.1682 3.9840 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332665440.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:10 Heat of formation + Delta-G solvation = -72.450075 kcal Electronic energy + Delta-G solvation = -30276.536733 eV Core-core repulsion = 26054.283977 eV Total energy + Delta-G solvation = -4222.252756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.09937 -40.50989 -38.89709 -37.41135 -35.41593 -34.68533 -34.21337 -31.36805 -30.69411 -30.18052 -29.14936 -27.01418 -26.06598 -25.59622 -24.47615 -22.89621 -22.44823 -21.41353 -20.57565 -19.14575 -17.87445 -17.27012 -16.81043 -16.51792 -16.20888 -15.92279 -15.72605 -15.53545 -15.04882 -14.81882 -14.65234 -14.33697 -14.20291 -13.73033 -13.50703 -13.39527 -13.24991 -13.17372 -12.85917 -12.74595 -12.62091 -12.19419 -12.13586 -11.90841 -11.83784 -11.37733 -11.34955 -11.10524 -11.02426 -10.84041 -10.65235 -10.49143 -10.33936 -10.03628 -9.84093 -9.79069 -9.61810 -9.09159 -8.80936 -8.60961 -8.33956 -6.62881 -5.65908 -3.12433 0.97650 1.08606 2.64223 2.97886 3.43071 3.48038 3.48964 3.50926 4.06365 4.23293 4.40061 4.54783 4.60694 4.76050 4.91049 4.92295 4.95663 5.01195 5.12263 5.17923 5.21235 5.29225 5.39327 5.43703 5.49261 5.54342 5.66835 5.72650 5.84108 5.88935 5.89783 5.94301 5.97259 6.00552 6.05311 6.21104 6.29158 6.52065 6.65064 6.72756 6.79086 6.86554 7.37157 7.46980 7.77902 7.87572 8.17845 8.21358 8.46359 9.30281 9.93252 10.41902 11.38100 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.003092 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.774718 B = 9052.261969 C =10572.831386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.071 4.071 3 H 0.105 0.895 4 C 0.517 3.483 5 O -0.528 6.528 6 N -0.605 5.605 7 C 0.078 3.922 8 C 0.084 3.916 9 C 0.072 3.928 10 H 0.096 0.904 11 O -0.549 6.549 12 C 0.126 3.874 13 N -0.592 5.592 14 C 0.170 3.830 15 C -0.253 4.253 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.908 5.908 19 Si 0.903 3.097 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C -0.098 4.098 24 C -0.055 4.055 25 C -0.129 4.129 26 C -0.092 4.092 27 C -0.159 4.159 28 C 0.101 3.899 29 F -0.141 7.141 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.357 0.643 39 H 0.037 0.963 40 H 0.055 0.945 41 H 0.026 0.974 42 H 0.037 0.963 43 H 0.000 1.000 44 H 0.251 0.749 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 17.651 16.498 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.092 4.092 3 H 0.123 0.877 4 C 0.304 3.696 5 O -0.403 6.403 6 N -0.337 5.337 7 C -0.065 4.065 8 C -0.039 4.039 9 C 0.009 3.991 10 H 0.114 0.886 11 O -0.352 6.352 12 C -0.003 4.003 13 N -0.313 5.313 14 C 0.025 3.975 15 C -0.383 4.383 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.553 5.553 19 Si 0.733 3.267 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.099 4.099 24 C -0.073 4.073 25 C -0.147 4.147 26 C -0.110 4.110 27 C -0.177 4.177 28 C 0.081 3.919 29 F -0.120 7.120 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.202 0.798 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.019 0.981 44 H 0.061 0.939 45 H 0.150 0.850 46 H 0.148 0.852 47 H 0.149 0.851 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.034 16.664 16.887 23.918 hybrid contribution 0.139 -0.304 -0.091 0.346 sum 3.173 16.361 16.796 23.661 Atomic orbital electron populations 1.22058 0.91444 1.03832 1.03603 1.20174 0.98278 1.00227 0.90515 0.87720 1.20335 0.80373 0.84710 0.84170 1.90740 1.37611 1.25822 1.86162 1.47680 1.51239 1.29112 1.05698 1.21981 0.95547 0.86693 1.02251 1.22383 0.99576 0.95920 0.86069 1.23254 0.84031 0.92181 0.99661 0.88590 1.86633 1.32729 1.62569 1.53298 1.21282 0.93246 0.91815 0.93948 1.43696 1.32433 1.08862 1.46357 1.20730 0.91903 0.92880 0.91963 1.19190 1.35650 0.84229 0.99187 0.91619 1.24989 1.01872 0.97578 0.95183 1.70078 1.47442 1.30189 1.07588 0.86269 0.78226 0.83303 0.78885 1.21533 1.21775 1.20443 1.19361 0.99740 0.95355 0.95474 1.20909 0.97589 0.92509 0.96260 1.21230 0.98533 1.00502 0.94474 1.21007 0.97184 0.93461 0.99393 1.21046 1.03248 0.96080 0.97369 1.17494 0.99039 0.79012 0.96321 1.91457 1.91016 1.34695 1.94826 0.91417 0.90185 0.91503 0.91316 0.91446 0.91278 0.89228 0.90658 0.79790 0.94440 0.92644 0.95579 0.94426 0.98141 0.93859 0.85036 0.85213 0.85144 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.64 37.16 0.32 -1.12 16 2 C -0.07 -0.80 2.08 -92.92 -0.19 -0.99 16 3 H 0.10 1.05 6.39 -51.93 -0.33 0.72 16 4 C 0.52 7.43 6.95 -10.98 -0.08 7.36 16 5 O -0.53 -9.64 14.69 5.56 0.08 -9.56 16 6 N -0.60 -7.63 2.84 -181.57 -0.52 -8.15 16 7 C 0.08 0.69 8.45 59.85 0.51 1.19 16 8 C 0.08 1.15 5.11 -4.04 -0.02 1.13 16 9 C 0.07 1.25 3.48 -26.73 -0.09 1.16 16 10 H 0.10 2.06 8.14 -51.93 -0.42 1.63 16 11 O -0.55 -9.17 11.70 -35.23 -0.41 -9.58 16 12 C 0.13 2.55 5.34 -4.05 -0.02 2.53 16 13 N -0.59 -15.14 2.84 -181.12 -0.51 -15.65 16 14 C 0.17 4.25 8.66 59.85 0.52 4.77 16 15 C -0.25 -7.21 9.65 -15.06 -0.15 -7.36 16 16 H 0.07 1.87 7.87 -52.49 -0.41 1.46 16 17 C 0.00 0.05 5.09 -17.43 -0.09 -0.04 16 18 N -0.91 -27.17 10.76 55.49 0.60 -26.57 16 19 Si 0.90 22.65 29.58 -169.99 -5.03 17.62 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.10 -1.21 4.40 -104.55 -0.46 -1.67 16 24 C -0.05 -0.68 7.93 -39.60 -0.31 -0.99 16 25 C -0.13 -1.36 10.04 -39.58 -0.40 -1.76 16 26 C -0.09 -0.86 10.04 -39.59 -0.40 -1.26 16 27 C -0.16 -1.58 10.03 -39.51 -0.40 -1.98 16 28 C 0.10 1.18 7.25 -39.42 -0.29 0.90 16 29 F -0.14 -1.66 16.19 2.25 0.04 -1.62 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.67 4.53 -51.93 -0.24 0.43 16 32 H 0.07 0.72 7.39 -51.93 -0.38 0.33 16 33 H 0.07 0.63 6.95 -51.93 -0.36 0.26 16 34 H 0.07 0.47 6.01 -51.92 -0.31 0.16 16 35 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 36 H 0.09 1.37 7.42 -51.93 -0.39 0.98 16 37 H 0.08 0.83 7.89 -51.93 -0.41 0.42 16 38 H 0.36 4.66 8.79 45.56 0.40 5.06 16 39 H 0.04 0.67 8.07 -51.93 -0.42 0.26 16 40 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 41 H 0.03 0.70 7.33 -51.93 -0.38 0.32 16 42 H 0.04 1.03 7.37 -51.93 -0.38 0.65 16 43 H 0.00 0.00 7.00 -51.93 -0.36 -0.36 16 44 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.13 1.72 7.52 -52.49 -0.39 1.32 16 46 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 47 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 48 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -34.82 388.29 -7.90 -42.72 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.45 Total: 3.07 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -1.55 Total: 1.87 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.43 Total: -50.37 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.33 Total: -19.14 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.82 -7.90 -42.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332665440.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.734 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds