Wall clock time and date at job start Tue Mar 31 2020 22:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47214 * 2 1 4 4 C 1.50702 * 109.47781 * 239.99915 * 2 1 3 5 5 O 1.21274 * 120.00046 * 240.00578 * 4 2 1 6 6 N 1.34776 * 119.99750 * 59.99783 * 4 2 1 7 7 C 1.46502 * 120.00091 * 0.02562 * 6 4 2 8 8 C 1.46497 * 120.00159 * 180.02562 * 6 4 2 9 9 C 1.53002 * 109.47403 * 89.99776 * 8 6 4 10 10 H 1.09001 * 109.47254 * 305.00338 * 9 8 6 11 11 O 1.42904 * 109.46812 * 65.00339 * 9 8 6 12 12 C 1.53000 * 109.47394 * 185.00181 * 9 8 6 13 13 N 1.46492 * 109.47108 * 180.02562 * 12 9 8 14 14 C 1.46500 * 120.00210 * 90.00308 * 13 12 9 15 15 C 1.36945 * 119.99943 * 269.99571 * 13 12 9 16 16 H 1.07996 * 119.99615 * 23.19524 * 15 13 12 17 17 C 1.38810 * 120.00080 * 203.19096 * 15 13 12 18 18 N 1.31622 * 120.00098 * 13.70939 * 17 15 13 19 19 Si 1.86801 * 119.99774 * 193.71349 * 17 15 13 20 20 H 1.48497 * 109.47375 * 89.99926 * 19 17 15 21 21 H 1.48499 * 109.46906 * 209.99984 * 19 17 15 22 22 H 1.48496 * 109.47355 * 329.99889 * 19 17 15 23 23 C 1.50707 * 109.47015 * 119.99838 * 2 1 3 24 24 C 1.38214 * 120.01202 * 60.00090 * 23 2 1 25 25 C 1.38218 * 120.02643 * 179.97438 * 24 23 2 26 26 C 1.38270 * 120.05111 * 0.02948 * 25 24 23 27 27 C 1.38175 * 120.02549 * 359.97438 * 26 25 24 28 28 C 1.38436 * 120.00918 * 239.72371 * 23 2 1 29 29 F 1.35096 * 120.03006 * 0.02562 * 28 23 2 30 30 H 1.08995 * 109.47309 * 300.00395 * 1 2 3 31 31 H 1.09004 * 109.46961 * 60.00008 * 1 2 3 32 32 H 1.09001 * 109.47022 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47732 * 270.00261 * 7 6 4 34 34 H 1.09009 * 109.47080 * 30.00104 * 7 6 4 35 35 H 1.09000 * 109.47286 * 149.99900 * 7 6 4 36 36 H 1.08997 * 109.47172 * 330.00031 * 8 6 4 37 37 H 1.08999 * 109.47308 * 210.00198 * 8 6 4 38 38 H 0.96701 * 114.00241 * 59.99982 * 11 9 8 39 39 H 1.09001 * 109.47048 * 300.00283 * 12 9 8 40 40 H 1.08997 * 109.47056 * 59.99965 * 12 9 8 41 41 H 1.09003 * 109.47320 * 95.15739 * 14 13 12 42 42 H 1.09001 * 109.46937 * 215.15811 * 14 13 12 43 43 H 1.09003 * 109.46950 * 335.15247 * 14 13 12 44 44 H 0.97000 * 119.99802 * 180.02562 * 18 17 15 45 45 H 1.08001 * 119.98591 * 359.96161 * 24 23 2 46 46 H 1.07997 * 119.97882 * 179.97438 * 25 24 23 47 47 H 1.08001 * 119.98826 * 179.97438 * 26 25 24 48 48 H 1.07998 * 120.01634 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7069 -0.2500 -2.4545 7 6 0.8650 0.9414 -2.5890 8 6 2.1949 -0.9408 -3.6507 9 6 1.1867 -2.0138 -4.0669 10 1 0.9984 -2.6812 -3.2260 11 8 -0.0364 -1.3901 -4.4632 12 6 1.7524 -2.8178 -5.2393 13 7 0.7869 -3.8448 -5.6382 14 6 -0.2262 -3.5432 -6.6526 15 6 0.8314 -5.0867 -5.0630 16 1 1.2891 -5.2166 -4.0935 17 6 0.2882 -6.1786 -5.7260 18 7 -0.0229 -6.0859 -7.0016 19 14 -0.0014 -7.7794 -4.8079 20 1 -1.3648 -7.7731 -4.2196 21 1 0.1259 -8.9203 -5.7500 22 1 1.0046 -7.9176 -3.7244 23 6 2.0323 -0.7104 1.2305 24 6 1.6985 -2.0336 1.4495 25 6 2.1595 -2.6856 2.5777 26 6 2.9544 -2.0149 3.4888 27 6 3.2893 -0.6920 3.2721 28 6 2.8329 -0.0395 2.1390 29 9 3.1639 1.2524 1.9234 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.1831 0.6440 -2.6222 34 1 1.0288 1.6003 -1.7361 35 1 1.1229 1.4667 -3.5086 36 1 3.1549 -1.4090 -3.4336 37 1 2.3162 -0.2222 -4.4612 38 1 0.0562 -0.7810 -5.2086 39 1 1.9407 -2.1504 -6.0803 40 1 2.6854 -3.2935 -4.9371 41 1 0.1290 -3.8710 -7.6296 42 1 -1.1514 -4.0652 -6.4084 43 1 -0.4101 -2.4690 -6.6743 44 1 -0.4028 -6.8488 -7.4648 45 1 1.0771 -2.5583 0.7389 46 1 1.8979 -3.7195 2.7483 47 1 3.3137 -2.5252 4.3703 48 1 3.9099 -0.1682 3.9840 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332665440.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:09 Heat of formation + Delta-G solvation = -95.535759 kcal Electronic energy + Delta-G solvation = -30277.537803 eV Core-core repulsion = 26054.283977 eV Total energy + Delta-G solvation = -4223.253827 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.96518 -41.53251 -39.82690 -38.83688 -36.86652 -36.14524 -35.19961 -33.31478 -31.58872 -31.38135 -30.22993 -28.07899 -27.81561 -27.21673 -25.41648 -24.05033 -23.61523 -22.53060 -22.26195 -20.17177 -18.83465 -18.71842 -18.15898 -17.70872 -17.26197 -17.01267 -16.78893 -16.63371 -16.54923 -16.22163 -16.05512 -15.47549 -15.22733 -15.07774 -14.82747 -14.66074 -14.50324 -14.23717 -14.07627 -13.80728 -13.58996 -13.37244 -13.09433 -13.02204 -12.94177 -12.87291 -12.80713 -12.56081 -12.37199 -12.22304 -12.18866 -12.05171 -11.98531 -11.85246 -11.80211 -11.30786 -10.80449 -10.62163 -9.92148 -9.66076 -9.59130 -8.68542 -7.84032 -5.33081 0.14477 0.25439 1.41009 1.42482 1.51424 1.55850 2.00600 2.47835 2.64495 3.22464 3.26070 3.36924 3.52317 3.56046 3.73512 3.80263 3.98214 4.09316 4.12107 4.15619 4.19406 4.32375 4.36806 4.40766 4.48227 4.53265 4.68872 4.70348 4.77547 4.79424 4.91429 4.91651 4.97271 5.00045 5.06081 5.13880 5.22338 5.23893 5.38024 5.38902 5.47315 5.54426 5.59469 5.72342 5.92341 6.31005 6.36887 7.02443 7.13703 7.14617 7.87741 8.28656 9.16715 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.003092 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.774718 B = 9052.261969 C =10572.831386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 H 0.122 0.878 4 C 0.508 3.492 5 O -0.577 6.577 6 N -0.603 5.603 7 C 0.070 3.930 8 C 0.094 3.906 9 C 0.096 3.904 10 H 0.047 0.953 11 O -0.558 6.558 12 C 0.122 3.878 13 N -0.610 5.610 14 C 0.186 3.814 15 C -0.264 4.264 16 H 0.056 0.944 17 C -0.051 4.051 18 N -0.935 5.935 19 Si 0.963 3.037 20 H -0.286 1.286 21 H -0.288 1.288 22 H -0.273 1.273 23 C -0.114 4.114 24 C -0.077 4.077 25 C -0.137 4.137 26 C -0.087 4.087 27 C -0.157 4.157 28 C 0.084 3.916 29 F -0.143 7.143 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.378 0.622 39 H 0.069 0.931 40 H 0.041 0.959 41 H 0.001 0.999 42 H 0.003 0.997 43 H 0.042 0.958 44 H 0.249 0.751 45 H 0.111 0.889 46 H 0.144 0.856 47 H 0.164 0.836 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.202 19.882 17.747 26.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 H 0.139 0.861 4 C 0.297 3.703 5 O -0.457 6.457 6 N -0.334 5.334 7 C -0.071 4.071 8 C -0.030 4.030 9 C 0.033 3.967 10 H 0.066 0.934 11 O -0.364 6.364 12 C -0.005 4.005 13 N -0.333 5.333 14 C 0.041 3.959 15 C -0.394 4.394 16 H 0.074 0.926 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.791 3.209 20 H -0.213 1.213 21 H -0.214 1.214 22 H -0.198 1.198 23 C -0.115 4.115 24 C -0.095 4.095 25 C -0.155 4.155 26 C -0.105 4.105 27 C -0.176 4.176 28 C 0.065 3.935 29 F -0.122 7.122 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.135 0.865 38 H 0.226 0.774 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.019 0.981 42 H 0.022 0.978 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.129 0.871 46 H 0.161 0.839 47 H 0.182 0.818 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.274 18.968 18.136 26.447 hybrid contribution 0.078 -0.930 -0.461 1.041 sum 3.352 18.039 17.675 25.476 Atomic orbital electron populations 1.22046 0.90132 1.02995 1.05172 1.20181 0.99214 1.00337 0.88732 0.86069 1.20964 0.79672 0.84220 0.85492 1.90709 1.39938 1.28053 1.86977 1.47781 1.51125 1.29747 1.04737 1.22269 0.94726 0.85467 1.04633 1.22165 0.97197 0.95868 0.87805 1.22642 0.84972 0.92494 0.96631 0.93438 1.86596 1.32239 1.63064 1.54483 1.21500 0.91732 0.91302 0.95938 1.43920 1.33783 1.09177 1.46428 1.20472 0.90143 0.94783 0.90484 1.19394 1.35180 0.85881 0.98956 0.92649 1.25704 1.02253 1.00607 0.96014 1.70218 1.48411 1.30823 1.08684 0.85331 0.78030 0.79694 0.77838 1.21325 1.21443 1.19830 1.19506 1.00372 0.95514 0.96120 1.20894 0.98613 0.93044 0.96974 1.21503 0.98514 1.01307 0.94151 1.21380 0.95995 0.93272 0.99864 1.21416 1.02721 0.96392 0.97035 1.17687 0.99565 0.79163 0.97084 1.91443 1.91070 1.34742 1.94930 0.89653 0.88751 0.93528 0.91400 0.89318 0.88740 0.91088 0.86521 0.77378 0.91241 0.94042 0.98051 0.97816 0.93914 0.94204 0.87067 0.83856 0.81842 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.64 71.98 0.62 -2.03 16 2 C -0.06 -1.41 2.08 -12.28 -0.03 -1.43 16 3 H 0.12 2.23 6.39 -2.38 -0.02 2.21 16 4 C 0.51 14.68 6.95 87.66 0.61 15.29 16 5 O -0.58 -22.10 14.69 -3.01 -0.04 -22.15 16 6 N -0.60 -14.39 2.84 -846.76 -2.40 -16.79 16 7 C 0.07 1.01 8.45 127.77 1.08 2.09 16 8 C 0.09 2.44 5.11 86.38 0.44 2.88 16 9 C 0.10 3.30 3.48 30.59 0.11 3.41 16 10 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 11 O -0.56 -17.55 11.70 -148.98 -1.74 -19.29 16 12 C 0.12 4.90 5.34 86.38 0.46 5.36 16 13 N -0.61 -31.56 2.84 -726.95 -2.07 -33.63 16 14 C 0.19 9.31 8.66 127.77 1.11 10.42 16 15 C -0.26 -15.42 9.65 84.03 0.81 -14.61 16 16 H 0.06 3.28 7.87 -2.91 -0.02 3.26 16 17 C -0.05 -2.98 5.09 84.86 0.43 -2.55 16 18 N -0.93 -57.16 10.76 21.65 0.23 -56.93 16 19 Si 0.96 47.56 29.58 68.60 2.03 49.59 16 20 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 23 C -0.11 -2.81 4.40 -19.82 -0.09 -2.90 16 24 C -0.08 -1.99 7.93 22.26 0.18 -1.81 16 25 C -0.14 -2.85 10.04 22.27 0.22 -2.62 16 26 C -0.09 -1.46 10.04 22.26 0.22 -1.24 16 27 C -0.16 -2.84 10.03 22.31 0.22 -2.62 16 28 C 0.08 1.90 7.25 22.38 0.16 2.06 16 29 F -0.14 -3.17 16.19 44.97 0.73 -2.44 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.40 4.53 -2.39 -0.01 1.39 16 32 H 0.05 1.03 7.39 -2.39 -0.02 1.01 16 33 H 0.07 1.03 6.95 -2.39 -0.02 1.02 16 34 H 0.09 0.93 6.01 -2.38 -0.01 0.91 16 35 H 0.09 0.93 7.89 -2.39 -0.02 0.91 16 36 H 0.07 2.17 7.42 -2.39 -0.02 2.15 16 37 H 0.12 2.11 7.89 -2.39 -0.02 2.09 16 38 H 0.38 8.43 8.79 -74.06 -0.65 7.78 16 39 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 40 H 0.04 1.76 8.04 -2.39 -0.02 1.74 16 41 H 0.00 0.07 7.33 -2.39 -0.02 0.05 16 42 H 0.00 0.17 7.37 -2.39 -0.02 0.15 16 43 H 0.04 1.73 7.00 -2.39 -0.02 1.71 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.11 3.22 7.52 -2.91 -0.02 3.20 16 46 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 47 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 48 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -79.38 388.29 3.62 -75.76 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.32 Total: 16.17 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 6.56 Total: 9.71 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -4.24 Total: -107.35 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -1.79 Total: -41.44 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.73 Total: -2.44 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -79.38 3.62 -75.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332665440.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.780 kcal (2) G-P(sol) polarization free energy of solvation -79.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds