Wall clock time and date at job start Tue Mar 31 2020 22:14:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09006 * 109.47214 * 2 1
4 4 C 1.50702 * 109.47781 * 239.99915 * 2 1 3
5 5 O 1.21274 * 120.00046 * 240.00578 * 4 2 1
6 6 N 1.34776 * 119.99750 * 59.99783 * 4 2 1
7 7 C 1.46502 * 120.00091 * 0.02562 * 6 4 2
8 8 C 1.46497 * 120.00159 * 180.02562 * 6 4 2
9 9 C 1.53002 * 109.47403 * 89.99776 * 8 6 4
10 10 H 1.09001 * 109.47254 * 305.00338 * 9 8 6
11 11 O 1.42904 * 109.46812 * 65.00339 * 9 8 6
12 12 C 1.53000 * 109.47394 * 185.00181 * 9 8 6
13 13 N 1.46492 * 109.47108 * 180.02562 * 12 9 8
14 14 C 1.46500 * 120.00210 * 90.00308 * 13 12 9
15 15 C 1.36945 * 119.99943 * 269.99571 * 13 12 9
16 16 H 1.07996 * 119.99615 * 23.19524 * 15 13 12
17 17 C 1.38810 * 120.00080 * 203.19096 * 15 13 12
18 18 N 1.31622 * 120.00098 * 13.70939 * 17 15 13
19 19 Si 1.86801 * 119.99774 * 193.71349 * 17 15 13
20 20 H 1.48497 * 109.47375 * 89.99926 * 19 17 15
21 21 H 1.48499 * 109.46906 * 209.99984 * 19 17 15
22 22 H 1.48496 * 109.47355 * 329.99889 * 19 17 15
23 23 C 1.50707 * 109.47015 * 119.99838 * 2 1 3
24 24 C 1.38214 * 120.01202 * 60.00090 * 23 2 1
25 25 C 1.38218 * 120.02643 * 179.97438 * 24 23 2
26 26 C 1.38270 * 120.05111 * 0.02948 * 25 24 23
27 27 C 1.38175 * 120.02549 * 359.97438 * 26 25 24
28 28 C 1.38436 * 120.00918 * 239.72371 * 23 2 1
29 29 F 1.35096 * 120.03006 * 0.02562 * 28 23 2
30 30 H 1.08995 * 109.47309 * 300.00395 * 1 2 3
31 31 H 1.09004 * 109.46961 * 60.00008 * 1 2 3
32 32 H 1.09001 * 109.47022 * 179.97438 * 1 2 3
33 33 H 1.08997 * 109.47732 * 270.00261 * 7 6 4
34 34 H 1.09009 * 109.47080 * 30.00104 * 7 6 4
35 35 H 1.09000 * 109.47286 * 149.99900 * 7 6 4
36 36 H 1.08997 * 109.47172 * 330.00031 * 8 6 4
37 37 H 1.08999 * 109.47308 * 210.00198 * 8 6 4
38 38 H 0.96701 * 114.00241 * 59.99982 * 11 9 8
39 39 H 1.09001 * 109.47048 * 300.00283 * 12 9 8
40 40 H 1.08997 * 109.47056 * 59.99965 * 12 9 8
41 41 H 1.09003 * 109.47320 * 95.15739 * 14 13 12
42 42 H 1.09001 * 109.46937 * 215.15811 * 14 13 12
43 43 H 1.09003 * 109.46950 * 335.15247 * 14 13 12
44 44 H 0.97000 * 119.99802 * 180.02562 * 18 17 15
45 45 H 1.08001 * 119.98591 * 359.96161 * 24 23 2
46 46 H 1.07997 * 119.97882 * 179.97438 * 25 24 23
47 47 H 1.08001 * 119.98826 * 179.97438 * 26 25 24
48 48 H 1.07998 * 120.01634 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0325 -0.7104 -1.2304
5 8 2.7296 -1.6965 -1.1191
6 7 1.7069 -0.2500 -2.4545
7 6 0.8650 0.9414 -2.5890
8 6 2.1949 -0.9408 -3.6507
9 6 1.1867 -2.0138 -4.0669
10 1 0.9984 -2.6812 -3.2260
11 8 -0.0364 -1.3901 -4.4632
12 6 1.7524 -2.8178 -5.2393
13 7 0.7869 -3.8448 -5.6382
14 6 -0.2262 -3.5432 -6.6526
15 6 0.8314 -5.0867 -5.0630
16 1 1.2891 -5.2166 -4.0935
17 6 0.2882 -6.1786 -5.7260
18 7 -0.0229 -6.0859 -7.0016
19 14 -0.0014 -7.7794 -4.8079
20 1 -1.3648 -7.7731 -4.2196
21 1 0.1259 -8.9203 -5.7500
22 1 1.0046 -7.9176 -3.7244
23 6 2.0323 -0.7104 1.2305
24 6 1.6985 -2.0336 1.4495
25 6 2.1595 -2.6856 2.5777
26 6 2.9544 -2.0149 3.4888
27 6 3.2893 -0.6920 3.2721
28 6 2.8329 -0.0395 2.1390
29 9 3.1639 1.2524 1.9234
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 -0.1831 0.6440 -2.6222
34 1 1.0288 1.6003 -1.7361
35 1 1.1229 1.4667 -3.5086
36 1 3.1549 -1.4090 -3.4336
37 1 2.3162 -0.2222 -4.4612
38 1 0.0562 -0.7810 -5.2086
39 1 1.9407 -2.1504 -6.0803
40 1 2.6854 -3.2935 -4.9371
41 1 0.1290 -3.8710 -7.6296
42 1 -1.1514 -4.0652 -6.4084
43 1 -0.4101 -2.4690 -6.6743
44 1 -0.4028 -6.8488 -7.4648
45 1 1.0771 -2.5583 0.7389
46 1 1.8979 -3.7195 2.7483
47 1 3.3137 -2.5252 4.3703
48 1 3.9099 -0.1682 3.9840
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001332665440.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:14:09
Heat of formation + Delta-G solvation = -95.535759 kcal
Electronic energy + Delta-G solvation = -30277.537803 eV
Core-core repulsion = 26054.283977 eV
Total energy + Delta-G solvation = -4223.253827 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-49.96518 -41.53251 -39.82690 -38.83688 -36.86652 -36.14524 -35.19961 -33.31478
-31.58872 -31.38135 -30.22993 -28.07899 -27.81561 -27.21673 -25.41648 -24.05033
-23.61523 -22.53060 -22.26195 -20.17177 -18.83465 -18.71842 -18.15898 -17.70872
-17.26197 -17.01267 -16.78893 -16.63371 -16.54923 -16.22163 -16.05512 -15.47549
-15.22733 -15.07774 -14.82747 -14.66074 -14.50324 -14.23717 -14.07627 -13.80728
-13.58996 -13.37244 -13.09433 -13.02204 -12.94177 -12.87291 -12.80713 -12.56081
-12.37199 -12.22304 -12.18866 -12.05171 -11.98531 -11.85246 -11.80211 -11.30786
-10.80449 -10.62163 -9.92148 -9.66076 -9.59130 -8.68542 -7.84032 -5.33081
0.14477 0.25439 1.41009 1.42482 1.51424 1.55850 2.00600 2.47835
2.64495 3.22464 3.26070 3.36924 3.52317 3.56046 3.73512 3.80263
3.98214 4.09316 4.12107 4.15619 4.19406 4.32375 4.36806 4.40766
4.48227 4.53265 4.68872 4.70348 4.77547 4.79424 4.91429 4.91651
4.97271 5.00045 5.06081 5.13880 5.22338 5.23893 5.38024 5.38902
5.47315 5.54426 5.59469 5.72342 5.92341 6.31005 6.36887 7.02443
7.13703 7.14617 7.87741 8.28656 9.16715
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.013212 B = 0.003092 C = 0.002648
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2118.774718 B = 9052.261969 C =10572.831386
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.064 4.064
3 H 0.122 0.878
4 C 0.508 3.492
5 O -0.577 6.577
6 N -0.603 5.603
7 C 0.070 3.930
8 C 0.094 3.906
9 C 0.096 3.904
10 H 0.047 0.953
11 O -0.558 6.558
12 C 0.122 3.878
13 N -0.610 5.610
14 C 0.186 3.814
15 C -0.264 4.264
16 H 0.056 0.944
17 C -0.051 4.051
18 N -0.935 5.935
19 Si 0.963 3.037
20 H -0.286 1.286
21 H -0.288 1.288
22 H -0.273 1.273
23 C -0.114 4.114
24 C -0.077 4.077
25 C -0.137 4.137
26 C -0.087 4.087
27 C -0.157 4.157
28 C 0.084 3.916
29 F -0.143 7.143
30 H 0.085 0.915
31 H 0.094 0.906
32 H 0.046 0.954
33 H 0.068 0.932
34 H 0.088 0.912
35 H 0.094 0.906
36 H 0.071 0.929
37 H 0.117 0.883
38 H 0.378 0.622
39 H 0.069 0.931
40 H 0.041 0.959
41 H 0.001 0.999
42 H 0.003 0.997
43 H 0.042 0.958
44 H 0.249 0.751
45 H 0.111 0.889
46 H 0.144 0.856
47 H 0.164 0.836
48 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.202 19.882 17.747 26.842
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.085 4.085
3 H 0.139 0.861
4 C 0.297 3.703
5 O -0.457 6.457
6 N -0.334 5.334
7 C -0.071 4.071
8 C -0.030 4.030
9 C 0.033 3.967
10 H 0.066 0.934
11 O -0.364 6.364
12 C -0.005 4.005
13 N -0.333 5.333
14 C 0.041 3.959
15 C -0.394 4.394
16 H 0.074 0.926
17 C -0.246 4.246
18 N -0.581 5.581
19 Si 0.791 3.209
20 H -0.213 1.213
21 H -0.214 1.214
22 H -0.198 1.198
23 C -0.115 4.115
24 C -0.095 4.095
25 C -0.155 4.155
26 C -0.105 4.105
27 C -0.176 4.176
28 C 0.065 3.935
29 F -0.122 7.122
30 H 0.103 0.897
31 H 0.112 0.888
32 H 0.065 0.935
33 H 0.086 0.914
34 H 0.107 0.893
35 H 0.113 0.887
36 H 0.089 0.911
37 H 0.135 0.865
38 H 0.226 0.774
39 H 0.088 0.912
40 H 0.060 0.940
41 H 0.019 0.981
42 H 0.022 0.978
43 H 0.061 0.939
44 H 0.058 0.942
45 H 0.129 0.871
46 H 0.161 0.839
47 H 0.182 0.818
48 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges 3.274 18.968 18.136 26.447
hybrid contribution 0.078 -0.930 -0.461 1.041
sum 3.352 18.039 17.675 25.476
Atomic orbital electron populations
1.22046 0.90132 1.02995 1.05172 1.20181 0.99214 1.00337 0.88732
0.86069 1.20964 0.79672 0.84220 0.85492 1.90709 1.39938 1.28053
1.86977 1.47781 1.51125 1.29747 1.04737 1.22269 0.94726 0.85467
1.04633 1.22165 0.97197 0.95868 0.87805 1.22642 0.84972 0.92494
0.96631 0.93438 1.86596 1.32239 1.63064 1.54483 1.21500 0.91732
0.91302 0.95938 1.43920 1.33783 1.09177 1.46428 1.20472 0.90143
0.94783 0.90484 1.19394 1.35180 0.85881 0.98956 0.92649 1.25704
1.02253 1.00607 0.96014 1.70218 1.48411 1.30823 1.08684 0.85331
0.78030 0.79694 0.77838 1.21325 1.21443 1.19830 1.19506 1.00372
0.95514 0.96120 1.20894 0.98613 0.93044 0.96974 1.21503 0.98514
1.01307 0.94151 1.21380 0.95995 0.93272 0.99864 1.21416 1.02721
0.96392 0.97035 1.17687 0.99565 0.79163 0.97084 1.91443 1.91070
1.34742 1.94930 0.89653 0.88751 0.93528 0.91400 0.89318 0.88740
0.91088 0.86521 0.77378 0.91241 0.94042 0.98051 0.97816 0.93914
0.94204 0.87067 0.83856 0.81842 0.82406
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.65 8.64 71.98 0.62 -2.03 16
2 C -0.06 -1.41 2.08 -12.28 -0.03 -1.43 16
3 H 0.12 2.23 6.39 -2.38 -0.02 2.21 16
4 C 0.51 14.68 6.95 87.66 0.61 15.29 16
5 O -0.58 -22.10 14.69 -3.01 -0.04 -22.15 16
6 N -0.60 -14.39 2.84 -846.76 -2.40 -16.79 16
7 C 0.07 1.01 8.45 127.77 1.08 2.09 16
8 C 0.09 2.44 5.11 86.38 0.44 2.88 16
9 C 0.10 3.30 3.48 30.59 0.11 3.41 16
10 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16
11 O -0.56 -17.55 11.70 -148.98 -1.74 -19.29 16
12 C 0.12 4.90 5.34 86.38 0.46 5.36 16
13 N -0.61 -31.56 2.84 -726.95 -2.07 -33.63 16
14 C 0.19 9.31 8.66 127.77 1.11 10.42 16
15 C -0.26 -15.42 9.65 84.03 0.81 -14.61 16
16 H 0.06 3.28 7.87 -2.91 -0.02 3.26 16
17 C -0.05 -2.98 5.09 84.86 0.43 -2.55 16
18 N -0.93 -57.16 10.76 21.65 0.23 -56.93 16
19 Si 0.96 47.56 29.58 68.60 2.03 49.59 16
20 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16
21 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16
22 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16
23 C -0.11 -2.81 4.40 -19.82 -0.09 -2.90 16
24 C -0.08 -1.99 7.93 22.26 0.18 -1.81 16
25 C -0.14 -2.85 10.04 22.27 0.22 -2.62 16
26 C -0.09 -1.46 10.04 22.26 0.22 -1.24 16
27 C -0.16 -2.84 10.03 22.31 0.22 -2.62 16
28 C 0.08 1.90 7.25 22.38 0.16 2.06 16
29 F -0.14 -3.17 16.19 44.97 0.73 -2.44 16
30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16
31 H 0.09 1.40 4.53 -2.39 -0.01 1.39 16
32 H 0.05 1.03 7.39 -2.39 -0.02 1.01 16
33 H 0.07 1.03 6.95 -2.39 -0.02 1.02 16
34 H 0.09 0.93 6.01 -2.38 -0.01 0.91 16
35 H 0.09 0.93 7.89 -2.39 -0.02 0.91 16
36 H 0.07 2.17 7.42 -2.39 -0.02 2.15 16
37 H 0.12 2.11 7.89 -2.39 -0.02 2.09 16
38 H 0.38 8.43 8.79 -74.06 -0.65 7.78 16
39 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16
40 H 0.04 1.76 8.04 -2.39 -0.02 1.74 16
41 H 0.00 0.07 7.33 -2.39 -0.02 0.05 16
42 H 0.00 0.17 7.37 -2.39 -0.02 0.15 16
43 H 0.04 1.73 7.00 -2.39 -0.02 1.71 16
44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16
45 H 0.11 3.22 7.52 -2.91 -0.02 3.20 16
46 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16
47 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16
48 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16
Total: -1.00 -79.38 388.29 3.62 -75.76
By element:
Atomic # 1 Polarization: 15.85 SS G_CDS: 0.32 Total: 16.17 kcal
Atomic # 6 Polarization: 3.14 SS G_CDS: 6.56 Total: 9.71 kcal
Atomic # 7 Polarization: -103.11 SS G_CDS: -4.24 Total: -107.35 kcal
Atomic # 8 Polarization: -39.65 SS G_CDS: -1.79 Total: -41.44 kcal
Atomic # 9 Polarization: -3.17 SS G_CDS: 0.73 Total: -2.44 kcal
Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal
Total: -79.38 3.62 -75.76 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001332665440.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.780 kcal
(2) G-P(sol) polarization free energy of solvation -79.378 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.159 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.756 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.536 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds