Wall clock time and date at job start Tue Mar 31 2020 22:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00181 * 2 1 4 4 C 1.53001 * 109.47292 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47077 * 65.00260 * 4 3 2 6 6 C 1.36934 * 120.00396 * 274.48426 * 5 4 3 7 7 H 1.07996 * 120.00528 * 146.17114 * 6 5 4 8 8 C 1.38813 * 119.99568 * 326.17039 * 6 5 4 9 9 N 1.31625 * 120.00312 * 335.30296 * 8 6 5 10 10 Si 1.86797 * 120.00139 * 155.29831 * 8 6 5 11 11 H 1.48505 * 109.47021 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47235 * 119.99981 * 10 8 6 13 13 H 1.48499 * 109.47479 * 240.00042 * 10 8 6 14 14 C 1.46504 * 120.00170 * 94.47910 * 5 4 3 15 15 C 1.53001 * 109.47176 * 270.00463 * 14 5 4 16 16 N 1.46498 * 109.46959 * 179.97438 * 15 14 5 17 17 C 1.34780 * 120.00037 * 179.97438 * 16 15 14 18 18 O 1.21277 * 119.99658 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99758 * 179.97438 * 17 16 15 20 20 H 1.08991 * 109.47162 * 60.00719 * 19 17 16 21 21 C 1.53001 * 109.47269 * 300.00015 * 19 17 16 22 22 C 1.50703 * 109.46643 * 180.02562 * 19 17 16 23 23 C 1.38270 * 119.99110 * 60.02275 * 22 19 17 24 24 C 1.38217 * 120.05554 * 180.02562 * 23 22 19 25 25 C 1.38219 * 120.02387 * 359.97438 * 24 23 22 26 26 C 1.38442 * 119.97557 * 359.70459 * 25 24 23 27 27 F 1.35098 * 120.03018 * 180.32144 * 26 25 24 28 28 C 1.38175 * 119.98693 * 240.00059 * 22 19 17 29 29 H 1.09001 * 109.47380 * 60.00075 * 1 2 3 30 30 H 1.09007 * 109.47344 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47507 * 299.99588 * 1 2 3 32 32 H 1.08999 * 109.46716 * 60.00145 * 3 2 1 33 33 H 1.09004 * 109.47296 * 300.00462 * 3 2 1 34 34 H 1.08996 * 109.47160 * 305.00221 * 4 3 2 35 35 H 1.09002 * 109.46712 * 185.00404 * 4 3 2 36 36 H 0.96989 * 120.00193 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.47477 * 150.00046 * 14 5 4 38 38 H 1.09006 * 109.46497 * 29.99817 * 14 5 4 39 39 H 1.08996 * 109.47258 * 59.99449 * 15 14 5 40 40 H 1.08996 * 109.46987 * 299.99650 * 15 14 5 41 41 H 0.97004 * 120.00127 * 359.97438 * 16 15 14 42 42 H 1.09004 * 109.47276 * 300.00269 * 21 19 17 43 43 H 1.08997 * 109.46943 * 60.00012 * 21 19 17 44 44 H 1.09000 * 109.46827 * 180.02562 * 21 19 17 45 45 H 1.08008 * 119.96812 * 359.97438 * 23 22 19 46 46 H 1.07997 * 119.98811 * 179.97438 * 24 23 22 47 47 H 1.08004 * 120.01604 * 180.02562 * 25 24 23 48 48 H 1.07996 * 120.01199 * 0.02562 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0088 -0.7997 -1.3666 7 1 3.7898 -1.2681 -2.3147 8 6 4.3240 -1.5807 -0.2631 9 7 5.0414 -1.0751 0.7178 10 14 3.7298 -3.3493 -0.1701 11 1 2.9487 -3.6739 -1.3907 12 1 4.8990 -4.2599 -0.0745 13 1 2.8699 -3.5203 1.0284 14 6 4.3803 1.4038 -2.3833 15 6 3.1614 1.7030 -3.2583 16 7 3.5660 2.5428 -4.3885 17 6 2.6519 2.9343 -5.2983 18 8 1.4945 2.5918 -5.1811 19 6 3.0681 3.7987 -6.4605 20 1 3.8202 3.2759 -7.0512 21 6 3.6533 5.1115 -5.9360 22 6 1.8675 4.0934 -7.3225 23 6 0.7781 4.7556 -6.7872 24 6 -0.3239 5.0261 -7.5763 25 6 -0.3379 4.6352 -8.9020 26 6 0.7549 3.9780 -9.4409 27 9 0.7450 3.6012 -10.7383 28 6 1.8559 3.7021 -8.6476 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5682 0.8409 35 1 3.9784 2.1765 0.0890 36 1 5.2612 -1.6207 1.4890 37 1 5.1318 0.8801 -2.9740 38 1 4.7981 2.3389 -2.0102 39 1 2.4098 2.2268 -2.6676 40 1 2.7435 0.7680 -3.6313 41 1 4.4917 2.8171 -4.4820 42 1 2.9010 5.6343 -5.3454 43 1 4.5215 4.8986 -5.3124 44 1 3.9539 5.7368 -6.7767 45 1 0.7881 5.0611 -5.7512 46 1 -1.1743 5.5431 -7.1570 47 1 -1.1989 4.8470 -9.5187 48 1 2.7068 3.1848 -9.0655 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332927397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:57 Heat of formation + Delta-G solvation = -81.871735 kcal Electronic energy + Delta-G solvation = -29379.900101 eV Core-core repulsion = 25157.238791 eV Total energy + Delta-G solvation = -4222.661310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.05109 -40.32006 -38.65176 -37.25472 -35.77301 -34.38485 -34.09393 -31.40317 -30.89705 -29.84703 -29.17089 -27.36980 -25.61285 -25.05560 -23.90423 -22.95717 -22.38650 -21.44537 -20.48196 -19.75859 -17.62659 -17.12822 -16.76664 -16.39313 -16.15951 -15.86373 -15.72512 -15.50637 -15.18903 -14.92781 -14.66116 -14.38328 -14.00783 -13.90326 -13.75188 -13.56459 -13.30598 -13.21507 -12.97766 -12.57151 -12.48148 -12.13472 -12.00810 -11.90992 -11.80854 -11.55458 -11.17789 -11.11739 -10.86307 -10.77060 -10.65928 -10.53919 -10.05385 -9.93622 -9.71360 -9.68128 -9.15117 -8.84731 -8.80282 -8.63990 -8.40156 -6.63335 -5.72523 -3.25471 0.96971 1.03440 2.76341 3.21115 3.46260 3.54648 3.55838 3.60210 4.00219 4.30538 4.49415 4.59185 4.74723 4.75937 4.82765 4.87413 4.98651 5.04431 5.19340 5.36198 5.38473 5.49292 5.54274 5.62804 5.76559 5.79455 5.81153 5.85241 5.88520 5.90157 5.91615 6.09595 6.13660 6.17370 6.28418 6.29977 6.31293 6.56074 6.63137 6.66989 6.68222 6.70550 6.92393 7.66323 7.70684 7.88844 8.12210 8.39044 8.55568 9.20776 9.86994 10.37154 11.29012 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.002397 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.504179 B =11680.096971 C =11806.522946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.047 3.953 4 C 0.137 3.863 5 N -0.571 5.571 6 C -0.245 4.245 7 H 0.059 0.941 8 C 0.023 3.977 9 N -0.890 5.890 10 Si 0.898 3.102 11 H -0.278 1.278 12 H -0.296 1.296 13 H -0.288 1.288 14 C 0.138 3.862 15 C 0.096 3.904 16 N -0.722 5.722 17 C 0.512 3.488 18 O -0.535 6.535 19 C -0.075 4.075 20 H 0.106 0.894 21 C -0.141 4.141 22 C -0.035 4.035 23 C -0.093 4.093 24 C -0.093 4.093 25 C -0.155 4.155 26 C 0.092 3.908 27 F -0.143 7.143 28 C -0.146 4.146 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.025 0.975 32 H 0.023 0.977 33 H 0.028 0.972 34 H 0.108 0.892 35 H 0.041 0.959 36 H 0.252 0.748 37 H 0.055 0.945 38 H 0.038 0.962 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.397 0.603 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.127 0.873 46 H 0.132 0.868 47 H 0.132 0.868 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.848 15.449 -13.823 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C -0.032 4.032 4 C 0.010 3.990 5 N -0.290 5.290 6 C -0.374 4.374 7 H 0.076 0.924 8 C -0.177 4.177 9 N -0.533 5.533 10 Si 0.729 3.271 11 H -0.203 1.203 12 H -0.223 1.223 13 H -0.214 1.214 14 C 0.010 3.990 15 C -0.030 4.030 16 N -0.373 5.373 17 C 0.296 3.704 18 O -0.411 6.411 19 C -0.097 4.097 20 H 0.124 0.876 21 C -0.198 4.198 22 C -0.036 4.036 23 C -0.111 4.111 24 C -0.111 4.111 25 C -0.174 4.174 26 C 0.073 3.927 27 F -0.121 7.121 28 C -0.165 4.165 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.125 0.875 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.230 0.770 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.145 0.855 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.483 14.902 -13.595 20.903 hybrid contribution -0.382 -0.688 -0.178 0.807 sum -5.865 14.214 -13.773 20.642 Atomic orbital electron populations 1.22637 0.84349 1.01456 0.98411 1.88230 1.16442 1.27439 1.94790 1.23452 0.98648 0.84319 0.96819 1.21162 0.87919 0.96536 0.93379 1.43594 1.74084 1.02399 1.08953 1.18857 1.40850 0.80700 0.96974 0.92376 1.24875 0.96863 0.97687 0.98264 1.69975 1.36337 1.36705 1.10292 0.86317 0.78153 0.84807 0.77872 1.20273 1.22330 1.21432 1.21000 0.92764 0.94742 0.90488 1.22482 1.00596 0.93680 0.86223 1.46098 1.11652 1.52879 1.26656 1.20309 0.86051 0.80770 0.83237 1.90729 1.18557 1.56189 1.75648 1.20352 0.96487 0.97720 0.95117 0.87583 1.21801 1.01257 0.94980 1.01772 1.19159 0.95196 0.96714 0.92499 1.21011 0.92665 0.97564 0.99886 1.20978 0.98359 0.98990 0.92762 1.21127 0.98093 1.01375 0.96815 1.17601 0.96060 1.00274 0.78731 1.91490 1.96889 1.89571 1.34186 1.20976 0.98517 1.03048 0.93975 0.95202 0.90794 0.95611 0.95893 0.95346 0.87464 0.94121 0.93779 0.92698 0.94342 0.92398 0.91632 0.76992 0.91694 0.91239 0.91213 0.85494 0.85029 0.84959 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.97 9.96 -35.23 -0.35 -8.33 16 3 C 0.05 0.96 6.28 37.16 0.23 1.19 16 4 C 0.14 3.08 5.83 -4.04 -0.02 3.06 16 5 N -0.57 -13.46 2.45 -173.24 -0.43 -13.89 16 6 C -0.24 -6.56 8.74 -15.06 -0.13 -6.69 16 7 H 0.06 1.60 7.94 -52.49 -0.42 1.18 16 8 C 0.02 0.63 4.95 -17.43 -0.09 0.54 16 9 N -0.89 -25.27 11.37 55.49 0.63 -24.64 16 10 Si 0.90 22.39 29.62 -169.99 -5.03 17.36 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 14 C 0.14 2.60 5.82 -4.04 -0.02 2.58 16 15 C 0.10 1.68 6.00 -4.04 -0.02 1.65 16 16 N -0.72 -9.66 5.45 -60.30 -0.33 -9.98 16 17 C 0.51 7.11 7.02 -10.98 -0.08 7.04 16 18 O -0.53 -9.75 15.11 5.56 0.08 -9.67 16 19 C -0.08 -0.74 2.90 -92.92 -0.27 -1.01 16 20 H 0.11 0.84 7.88 -51.93 -0.41 0.43 16 21 C -0.14 -1.03 8.90 37.16 0.33 -0.70 16 22 C -0.04 -0.39 4.40 -104.63 -0.46 -0.85 16 23 C -0.09 -1.02 7.93 -39.58 -0.31 -1.34 16 24 C -0.09 -0.90 10.04 -39.60 -0.40 -1.30 16 25 C -0.16 -1.54 10.03 -39.51 -0.40 -1.94 16 26 C 0.09 1.03 7.30 -39.42 -0.29 0.74 16 27 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 28 C -0.15 -1.57 9.65 -39.51 -0.38 -1.95 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.03 0.56 6.47 -51.93 -0.34 0.23 16 34 H 0.11 2.82 5.37 -51.93 -0.28 2.54 16 35 H 0.04 0.82 7.84 -51.93 -0.41 0.41 16 36 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.05 1.04 8.04 -51.93 -0.42 0.63 16 38 H 0.04 0.65 7.86 -51.93 -0.41 0.24 16 39 H 0.06 1.09 6.47 -51.93 -0.34 0.76 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.40 4.04 7.89 -40.82 -0.32 3.72 16 42 H 0.06 0.51 7.38 -51.93 -0.38 0.12 16 43 H 0.07 0.43 7.56 -51.93 -0.39 0.03 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.13 1.37 7.51 -52.48 -0.39 0.98 16 46 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 48 H 0.13 1.20 7.95 -52.49 -0.42 0.78 16 LS Contribution 398.79 15.07 6.01 6.01 Total: -1.00 -32.77 398.79 -8.01 -40.78 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.44 Total: 1.31 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.20 Total: 2.67 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.12 Total: -48.51 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.27 Total: -18.00 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.77 -8.01 -40.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332927397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.097 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds