Wall clock time and date at job start Tue Mar 31 2020 22:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00181 * 2 1 4 4 C 1.53001 * 109.47292 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47077 * 65.00260 * 4 3 2 6 6 C 1.36934 * 120.00396 * 274.48426 * 5 4 3 7 7 H 1.07996 * 120.00528 * 146.17114 * 6 5 4 8 8 C 1.38813 * 119.99568 * 326.17039 * 6 5 4 9 9 N 1.31625 * 120.00312 * 335.30296 * 8 6 5 10 10 Si 1.86797 * 120.00139 * 155.29831 * 8 6 5 11 11 H 1.48505 * 109.47021 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47235 * 119.99981 * 10 8 6 13 13 H 1.48499 * 109.47479 * 240.00042 * 10 8 6 14 14 C 1.46504 * 120.00170 * 94.47910 * 5 4 3 15 15 C 1.53001 * 109.47176 * 270.00463 * 14 5 4 16 16 N 1.46498 * 109.46959 * 179.97438 * 15 14 5 17 17 C 1.34780 * 120.00037 * 179.97438 * 16 15 14 18 18 O 1.21277 * 119.99658 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99758 * 179.97438 * 17 16 15 20 20 H 1.08991 * 109.47162 * 60.00719 * 19 17 16 21 21 C 1.53001 * 109.47269 * 300.00015 * 19 17 16 22 22 C 1.50703 * 109.46643 * 180.02562 * 19 17 16 23 23 C 1.38270 * 119.99110 * 60.02275 * 22 19 17 24 24 C 1.38217 * 120.05554 * 180.02562 * 23 22 19 25 25 C 1.38219 * 120.02387 * 359.97438 * 24 23 22 26 26 C 1.38442 * 119.97557 * 359.70459 * 25 24 23 27 27 F 1.35098 * 120.03018 * 180.32144 * 26 25 24 28 28 C 1.38175 * 119.98693 * 240.00059 * 22 19 17 29 29 H 1.09001 * 109.47380 * 60.00075 * 1 2 3 30 30 H 1.09007 * 109.47344 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47507 * 299.99588 * 1 2 3 32 32 H 1.08999 * 109.46716 * 60.00145 * 3 2 1 33 33 H 1.09004 * 109.47296 * 300.00462 * 3 2 1 34 34 H 1.08996 * 109.47160 * 305.00221 * 4 3 2 35 35 H 1.09002 * 109.46712 * 185.00404 * 4 3 2 36 36 H 0.96989 * 120.00193 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.47477 * 150.00046 * 14 5 4 38 38 H 1.09006 * 109.46497 * 29.99817 * 14 5 4 39 39 H 1.08996 * 109.47258 * 59.99449 * 15 14 5 40 40 H 1.08996 * 109.46987 * 299.99650 * 15 14 5 41 41 H 0.97004 * 120.00127 * 359.97438 * 16 15 14 42 42 H 1.09004 * 109.47276 * 300.00269 * 21 19 17 43 43 H 1.08997 * 109.46943 * 60.00012 * 21 19 17 44 44 H 1.09000 * 109.46827 * 180.02562 * 21 19 17 45 45 H 1.08008 * 119.96812 * 359.97438 * 23 22 19 46 46 H 1.07997 * 119.98811 * 179.97438 * 24 23 22 47 47 H 1.08004 * 120.01604 * 180.02562 * 25 24 23 48 48 H 1.07996 * 120.01199 * 0.02562 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0088 -0.7997 -1.3666 7 1 3.7898 -1.2681 -2.3147 8 6 4.3240 -1.5807 -0.2631 9 7 5.0414 -1.0751 0.7178 10 14 3.7298 -3.3493 -0.1701 11 1 2.9487 -3.6739 -1.3907 12 1 4.8990 -4.2599 -0.0745 13 1 2.8699 -3.5203 1.0284 14 6 4.3803 1.4038 -2.3833 15 6 3.1614 1.7030 -3.2583 16 7 3.5660 2.5428 -4.3885 17 6 2.6519 2.9343 -5.2983 18 8 1.4945 2.5918 -5.1811 19 6 3.0681 3.7987 -6.4605 20 1 3.8202 3.2759 -7.0512 21 6 3.6533 5.1115 -5.9360 22 6 1.8675 4.0934 -7.3225 23 6 0.7781 4.7556 -6.7872 24 6 -0.3239 5.0261 -7.5763 25 6 -0.3379 4.6352 -8.9020 26 6 0.7549 3.9780 -9.4409 27 9 0.7450 3.6012 -10.7383 28 6 1.8559 3.7021 -8.6476 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5682 0.8409 35 1 3.9784 2.1765 0.0890 36 1 5.2612 -1.6207 1.4890 37 1 5.1318 0.8801 -2.9740 38 1 4.7981 2.3389 -2.0102 39 1 2.4098 2.2268 -2.6676 40 1 2.7435 0.7680 -3.6313 41 1 4.4917 2.8171 -4.4820 42 1 2.9010 5.6343 -5.3454 43 1 4.5215 4.8986 -5.3124 44 1 3.9539 5.7368 -6.7767 45 1 0.7881 5.0611 -5.7512 46 1 -1.1743 5.5431 -7.1570 47 1 -1.1989 4.8470 -9.5187 48 1 2.7068 3.1848 -9.0655 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332927397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:56 Heat of formation + Delta-G solvation = -101.977662 kcal Electronic energy + Delta-G solvation = -29380.771960 eV Core-core repulsion = 25157.238791 eV Total energy + Delta-G solvation = -4223.533168 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.90047 -41.31066 -39.62359 -38.89175 -37.38796 -35.66563 -35.12139 -33.29139 -31.69112 -31.12360 -30.29470 -28.94101 -27.16650 -26.09635 -25.40388 -23.73756 -23.66202 -22.67736 -22.14321 -20.91374 -18.74510 -18.48226 -18.00933 -17.44517 -17.19881 -17.03552 -16.86003 -16.61249 -16.53712 -16.45522 -16.27728 -15.66731 -15.42520 -15.31213 -14.86989 -14.77754 -14.53295 -14.34469 -14.08405 -13.62936 -13.54254 -13.42784 -13.15030 -13.03088 -12.95564 -12.73245 -12.67877 -12.44797 -12.38501 -12.30521 -12.27540 -11.91662 -11.83137 -11.70066 -11.53218 -10.83872 -10.45076 -10.34476 -9.99739 -9.92972 -9.61886 -8.58364 -7.76325 -5.31203 0.17447 0.24446 1.45170 1.51157 1.58611 1.67214 2.16672 2.58353 2.70862 3.20323 3.21383 3.36501 3.51394 3.69215 3.80455 3.97605 4.09871 4.16459 4.24796 4.25364 4.27079 4.34522 4.42204 4.46197 4.50946 4.57913 4.72180 4.73380 4.78826 4.80799 4.89050 4.91033 4.95503 4.96865 5.09212 5.13505 5.13718 5.23866 5.28900 5.37935 5.51973 5.54673 5.73341 5.84438 5.93217 6.45499 6.63258 6.66407 7.23451 7.31761 7.93344 8.38926 9.20509 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.002397 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.504179 B =11680.096971 C =11806.522946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.053 3.947 4 C 0.134 3.866 5 N -0.587 5.587 6 C -0.241 4.241 7 H 0.043 0.957 8 C -0.018 4.018 9 N -0.912 5.912 10 Si 0.941 3.059 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.294 1.294 14 C 0.142 3.858 15 C 0.119 3.881 16 N -0.710 5.710 17 C 0.511 3.489 18 O -0.581 6.581 19 C -0.065 4.065 20 H 0.130 0.870 21 C -0.137 4.137 22 C -0.048 4.048 23 C -0.107 4.107 24 C -0.096 4.096 25 C -0.157 4.157 26 C 0.074 3.926 27 F -0.149 7.149 28 C -0.153 4.153 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.249 0.751 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.046 0.954 40 H 0.028 0.972 41 H 0.415 0.585 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.124 0.876 46 H 0.154 0.846 47 H 0.152 0.848 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.838 17.137 -14.736 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C -0.025 4.025 4 C 0.008 3.992 5 N -0.307 5.307 6 C -0.371 4.371 7 H 0.061 0.939 8 C -0.215 4.215 9 N -0.557 5.557 10 Si 0.771 3.229 11 H -0.204 1.204 12 H -0.220 1.220 13 H -0.221 1.221 14 C 0.015 3.985 15 C -0.007 4.007 16 N -0.362 5.362 17 C 0.297 3.703 18 O -0.461 6.461 19 C -0.086 4.086 20 H 0.148 0.852 21 C -0.195 4.195 22 C -0.049 4.049 23 C -0.125 4.125 24 C -0.113 4.113 25 C -0.176 4.176 26 C 0.055 3.945 27 F -0.128 7.128 28 C -0.172 4.172 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.253 0.747 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.142 0.858 46 H 0.172 0.828 47 H 0.169 0.831 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.447 16.621 -14.536 22.743 hybrid contribution -0.455 -1.154 0.052 1.241 sum -5.901 15.468 -14.484 21.997 Atomic orbital electron populations 1.22793 0.82049 1.02436 0.99804 1.88153 1.19136 1.28779 1.95119 1.23328 0.97165 0.83943 0.98092 1.21118 0.89536 0.96750 0.91800 1.43742 1.74627 1.01915 1.10416 1.18877 1.39393 0.82577 0.96233 0.93880 1.25309 0.97686 0.99987 0.98491 1.70060 1.37661 1.37379 1.10637 0.85644 0.77590 0.82431 0.77220 1.20419 1.22022 1.22107 1.21055 0.93055 0.95106 0.89265 1.21874 0.99384 0.92538 0.86941 1.45871 1.12794 1.52040 1.25524 1.21059 0.85221 0.80246 0.83726 1.90711 1.20645 1.57957 1.76794 1.20367 0.96661 0.98299 0.93250 0.85212 1.21832 1.01419 0.93613 1.02593 1.19339 0.95762 0.96988 0.92802 1.21176 0.93348 0.97951 1.00006 1.21268 0.98736 0.98704 0.92636 1.21399 0.98388 1.00646 0.97138 1.17859 0.96864 1.01110 0.78686 1.91470 1.96967 1.89744 1.34588 1.21173 0.99011 1.02993 0.93993 0.94600 0.90159 0.93262 0.93559 0.94825 0.90941 0.91800 0.94207 0.92873 0.91550 0.93573 0.95336 0.74745 0.92359 0.89662 0.89434 0.85794 0.82785 0.83055 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.39 -17.70 9.96 -148.98 -1.48 -19.18 16 3 C 0.05 2.13 6.28 71.98 0.45 2.58 16 4 C 0.13 5.98 5.83 86.38 0.50 6.48 16 5 N -0.59 -27.50 2.45 -702.00 -1.72 -29.23 16 6 C -0.24 -13.02 8.74 84.03 0.73 -12.28 16 7 H 0.04 2.42 7.94 -2.91 -0.02 2.40 16 8 C -0.02 -0.98 4.95 84.86 0.42 -0.56 16 9 N -0.91 -52.41 11.37 21.65 0.25 -52.17 16 10 Si 0.94 46.56 29.62 68.60 2.03 48.59 16 11 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 13 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 14 C 0.14 5.18 5.82 86.38 0.50 5.68 16 15 C 0.12 4.12 6.00 86.38 0.52 4.63 16 16 N -0.71 -17.80 5.45 -463.07 -2.52 -20.32 16 17 C 0.51 13.53 7.02 87.66 0.62 14.15 16 18 O -0.58 -21.12 15.11 -3.02 -0.05 -21.17 16 19 C -0.06 -1.12 2.90 -12.28 -0.04 -1.16 16 20 H 0.13 1.65 7.88 -2.39 -0.02 1.63 16 21 C -0.14 -1.60 8.90 71.98 0.64 -0.96 16 22 C -0.05 -0.99 4.40 -19.87 -0.09 -1.08 16 23 C -0.11 -2.23 7.93 22.27 0.18 -2.06 16 24 C -0.10 -1.73 10.04 22.26 0.22 -1.50 16 25 C -0.16 -2.90 10.03 22.31 0.22 -2.68 16 26 C 0.07 1.57 7.30 22.38 0.16 1.73 16 27 F -0.15 -3.34 17.27 44.97 0.78 -2.56 16 28 C -0.15 -3.08 9.65 22.31 0.22 -2.86 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.03 1.30 6.47 -2.39 -0.02 1.28 16 34 H 0.07 3.84 5.37 -2.39 -0.01 3.82 16 35 H 0.06 2.47 7.84 -2.39 -0.02 2.45 16 36 H 0.25 13.93 8.31 -92.72 -0.77 13.16 16 37 H 0.05 1.95 8.04 -2.39 -0.02 1.94 16 38 H 0.07 2.07 7.86 -2.38 -0.02 2.06 16 39 H 0.05 1.71 6.47 -2.39 -0.02 1.70 16 40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.42 7.30 7.89 -92.71 -0.73 6.57 16 42 H 0.06 0.78 7.38 -2.38 -0.02 0.76 16 43 H 0.08 0.73 7.56 -2.39 -0.02 0.71 16 44 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.12 2.60 7.51 -2.91 -0.02 2.58 16 46 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 47 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 48 H 0.15 2.40 7.95 -2.91 -0.02 2.37 16 Total: -1.00 -72.21 398.79 4.03 -68.18 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.23 Total: 15.58 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 6.52 Total: 12.27 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -4.00 Total: -101.71 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.53 Total: -40.35 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -72.21 4.03 -68.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332927397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.798 kcal (2) G-P(sol) polarization free energy of solvation -72.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds