Wall clock time and date at job start Tue Mar 31 2020 22:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00051 * 2 1 4 4 C 1.53004 * 109.47320 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47295 * 64.99374 * 4 3 2 6 6 C 1.36941 * 120.00357 * 270.00688 * 5 4 3 7 7 H 1.07997 * 120.00074 * 141.45842 * 6 5 4 8 8 C 1.38817 * 119.99635 * 321.45377 * 6 5 4 9 9 N 1.31612 * 119.99949 * 338.83472 * 8 6 5 10 10 Si 1.86798 * 119.99745 * 158.83551 * 8 6 5 11 11 H 1.48492 * 109.47222 * 90.00064 * 10 8 6 12 12 H 1.48503 * 109.46871 * 210.00256 * 10 8 6 13 13 H 1.48509 * 109.46981 * 329.99758 * 10 8 6 14 14 C 1.46503 * 119.99682 * 90.00343 * 5 4 3 15 15 C 1.53003 * 109.47100 * 264.70861 * 14 5 4 16 16 N 1.46503 * 109.47100 * 179.97438 * 15 14 5 17 17 C 1.34773 * 120.00078 * 179.97438 * 16 15 14 18 18 O 1.21285 * 120.00127 * 0.02562 * 17 16 15 19 19 C 1.50694 * 120.00143 * 179.97438 * 17 16 15 20 20 H 1.09005 * 109.47201 * 300.00283 * 19 17 16 21 21 C 1.52998 * 109.47155 * 59.99988 * 19 17 16 22 22 C 1.50701 * 109.47096 * 180.02562 * 19 17 16 23 23 C 1.38274 * 119.98244 * 120.00275 * 22 19 17 24 24 C 1.38224 * 120.04489 * 180.02562 * 23 22 19 25 25 C 1.38220 * 120.03009 * 359.97438 * 24 23 22 26 26 C 1.38435 * 119.97379 * 0.02562 * 25 24 23 27 27 F 1.35093 * 120.02751 * 180.02562 * 26 25 24 28 28 C 1.38172 * 119.99073 * 299.72535 * 22 19 17 29 29 H 1.09004 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47127 * 300.00215 * 1 2 3 31 31 H 1.09001 * 109.47087 * 60.00379 * 1 2 3 32 32 H 1.08994 * 109.46965 * 59.99647 * 3 2 1 33 33 H 1.09004 * 109.47070 * 299.99509 * 3 2 1 34 34 H 1.09000 * 109.46446 * 304.99928 * 4 3 2 35 35 H 1.08998 * 109.47253 * 184.99960 * 4 3 2 36 36 H 0.97005 * 119.99785 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.47300 * 144.70926 * 14 5 4 38 38 H 1.08991 * 109.47281 * 24.71003 * 14 5 4 39 39 H 1.09000 * 109.46991 * 59.99876 * 15 14 5 40 40 H 1.09005 * 109.47207 * 300.00130 * 15 14 5 41 41 H 0.96997 * 119.99578 * 0.02562 * 16 15 14 42 42 H 1.09000 * 109.47492 * 300.00546 * 21 19 17 43 43 H 1.09005 * 109.46825 * 60.00065 * 21 19 17 44 44 H 1.09003 * 109.47619 * 179.97438 * 21 19 17 45 45 H 1.07997 * 119.97492 * 0.02562 * 23 22 19 46 46 H 1.08001 * 119.98166 * 180.02562 * 24 23 22 47 47 H 1.07997 * 120.01385 * 180.02562 * 25 24 23 48 48 H 1.08000 * 120.00959 * 0.02562 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9758 0.5644 -1.2526 6 6 4.0968 -0.7971 -1.3368 7 1 3.8068 -1.3101 -2.2418 8 6 4.5923 -1.5177 -0.2587 9 7 5.3199 -0.9147 0.6573 10 14 4.2266 -3.3434 -0.1084 11 1 5.2890 -4.1194 -0.7968 12 1 4.1867 -3.7236 1.3266 13 1 2.9130 -3.6383 -0.7353 14 6 4.2865 1.4006 -2.4148 15 6 3.0584 1.4881 -3.3231 16 7 3.3689 2.3248 -4.4849 17 6 2.4308 2.5444 -5.4273 18 8 1.3293 2.0497 -5.3133 19 6 2.7500 3.4055 -6.6220 20 1 3.0250 4.4054 -6.2862 21 6 3.9160 2.7895 -7.3978 22 6 1.5404 3.4915 -7.5168 23 6 0.9669 4.7204 -7.7871 24 6 -0.1429 4.8007 -8.6071 25 6 -0.6803 3.6528 -9.1584 26 6 -0.1069 2.4220 -8.8884 27 9 -0.6309 1.2994 -9.4270 28 6 1.0084 2.3432 -8.0713 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8901 34 1 3.8514 0.5683 0.8410 35 1 3.9786 2.1765 0.0889 36 1 5.6658 -1.4182 1.4108 37 1 5.1166 0.9606 -2.9675 38 1 4.5625 2.4003 -2.0796 39 1 2.2283 1.9280 -2.7704 40 1 2.7824 0.4882 -3.6583 41 1 4.2500 2.7201 -4.5762 42 1 4.7908 2.7275 -6.7504 43 1 3.6410 1.7896 -7.7336 44 1 4.1467 3.4120 -8.2623 45 1 1.3863 5.6179 -7.3571 46 1 -0.5898 5.7611 -8.8179 47 1 -1.5471 3.7159 -9.7994 48 1 1.4591 1.3840 -7.8633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332927398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:01 Heat of formation + Delta-G solvation = -83.646137 kcal Electronic energy + Delta-G solvation = -29467.509654 eV Core-core repulsion = 25244.771400 eV Total energy + Delta-G solvation = -4222.738254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.97095 -40.29613 -38.64750 -37.26204 -35.76807 -34.36624 -34.09009 -31.41153 -30.72780 -29.95970 -29.20430 -27.34151 -25.61936 -25.05690 -23.92710 -22.90352 -22.33253 -21.42647 -20.48849 -19.74432 -17.59141 -17.24406 -16.69446 -16.38112 -16.09907 -15.84112 -15.64265 -15.52046 -15.18468 -14.92284 -14.62574 -14.17711 -14.07686 -13.97915 -13.66511 -13.63276 -13.40112 -13.25413 -12.81668 -12.54885 -12.39530 -12.16745 -12.05817 -11.92363 -11.79174 -11.49374 -11.15772 -11.14023 -10.87436 -10.76704 -10.66481 -10.59503 -10.03874 -9.97526 -9.73135 -9.63053 -9.10567 -8.86569 -8.81737 -8.63031 -8.38879 -6.57029 -5.74243 -3.31623 0.96377 1.06691 2.78246 3.22825 3.43818 3.51053 3.57084 3.61118 4.03984 4.32090 4.49972 4.57832 4.71615 4.78682 4.83665 4.88446 4.98648 5.05184 5.21339 5.37201 5.40898 5.51363 5.54412 5.66377 5.78294 5.80770 5.84552 5.85736 5.87378 5.91645 5.97170 6.08626 6.09045 6.16947 6.27318 6.29691 6.31074 6.56413 6.65831 6.67781 6.71188 6.72267 6.95712 7.61815 7.72861 7.89097 8.09783 8.41423 8.58478 9.21335 9.84575 10.38938 11.28272 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002536 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.817461 B =11038.481265 C =11178.692245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.044 3.956 4 C 0.144 3.856 5 N -0.570 5.570 6 C -0.246 4.246 7 H 0.056 0.944 8 C 0.022 3.978 9 N -0.892 5.892 10 Si 0.898 3.102 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.139 3.861 15 C 0.096 3.904 16 N -0.722 5.722 17 C 0.510 3.490 18 O -0.535 6.535 19 C -0.074 4.074 20 H 0.107 0.893 21 C -0.142 4.142 22 C -0.035 4.035 23 C -0.124 4.124 24 C -0.095 4.095 25 C -0.157 4.157 26 C 0.096 3.904 27 F -0.141 7.141 28 C -0.117 4.117 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.030 0.970 32 H 0.024 0.976 33 H 0.029 0.971 34 H 0.102 0.898 35 H 0.041 0.959 36 H 0.253 0.747 37 H 0.052 0.948 38 H 0.040 0.960 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.396 0.604 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.128 0.872 46 H 0.132 0.868 47 H 0.132 0.868 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 14.176 -15.602 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.035 4.035 4 C 0.018 3.982 5 N -0.290 5.290 6 C -0.376 4.376 7 H 0.074 0.926 8 C -0.178 4.178 9 N -0.535 5.535 10 Si 0.728 3.272 11 H -0.217 1.217 12 H -0.216 1.216 13 H -0.202 1.202 14 C 0.011 3.989 15 C -0.029 4.029 16 N -0.373 5.373 17 C 0.295 3.705 18 O -0.411 6.411 19 C -0.096 4.096 20 H 0.125 0.875 21 C -0.200 4.200 22 C -0.036 4.036 23 C -0.142 4.142 24 C -0.113 4.113 25 C -0.176 4.176 26 C 0.077 3.923 27 F -0.120 7.120 28 C -0.136 4.136 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.120 0.880 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.230 0.770 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.146 0.854 46 H 0.149 0.851 47 H 0.150 0.850 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.093 13.500 -15.334 21.319 hybrid contribution -0.378 -0.703 0.102 0.805 sum -6.471 12.797 -15.232 20.920 Atomic orbital electron populations 1.22637 0.84161 1.01530 0.98454 1.88207 1.16618 1.27535 1.94824 1.23498 0.98828 0.84284 0.96927 1.21058 0.87524 0.96593 0.93069 1.43512 1.75555 1.02871 1.07027 1.18799 1.36250 0.81344 1.01178 0.92622 1.25054 0.96015 0.97819 0.98888 1.69979 1.33661 1.35956 1.13856 0.86386 0.78419 0.85508 0.76890 1.21655 1.21649 1.20179 1.20992 0.93242 0.94716 0.89960 1.22458 1.01045 0.94110 0.85299 1.46098 1.15354 1.52184 1.23642 1.20336 0.84989 0.81528 0.83659 1.90740 1.22438 1.50522 1.77417 1.20358 0.94655 1.01151 0.93412 0.87482 1.21816 0.96152 1.01598 1.00412 1.19168 0.95761 0.92710 0.95921 1.21074 0.96688 0.97094 0.99341 1.20914 0.95761 0.97910 0.96685 1.21120 1.01880 0.91387 1.03197 1.17670 0.94885 0.82460 0.97269 1.91496 1.85862 1.50335 1.84279 1.20935 0.95797 0.99909 0.96990 0.90704 0.95556 0.95185 0.95785 0.95305 0.87998 0.94085 0.93692 0.92988 0.94205 0.92433 0.91588 0.77021 0.91170 0.91706 0.91191 0.85374 0.85057 0.84973 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -8.03 10.18 -35.23 -0.36 -8.38 16 3 C 0.04 0.90 6.28 37.16 0.23 1.13 16 4 C 0.14 3.28 5.76 -4.04 -0.02 3.26 16 5 N -0.57 -13.58 2.41 -173.24 -0.42 -14.00 16 6 C -0.25 -6.65 8.95 -15.06 -0.13 -6.78 16 7 H 0.06 1.54 7.91 -52.49 -0.42 1.13 16 8 C 0.02 0.61 4.95 -17.43 -0.09 0.53 16 9 N -0.89 -25.41 11.53 55.49 0.64 -24.77 16 10 Si 0.90 22.29 29.60 -169.99 -5.03 17.26 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.14 2.66 5.83 -4.04 -0.02 2.63 16 15 C 0.10 1.73 5.97 -4.04 -0.02 1.71 16 16 N -0.72 -9.89 5.45 -60.29 -0.33 -10.21 16 17 C 0.51 7.28 7.03 -10.99 -0.08 7.20 16 18 O -0.53 -10.09 15.13 5.55 0.08 -10.00 16 19 C -0.07 -0.73 2.90 -92.93 -0.27 -1.00 16 20 H 0.11 0.79 7.87 -51.93 -0.41 0.38 16 21 C -0.14 -1.14 8.90 37.16 0.33 -0.80 16 22 C -0.04 -0.39 4.39 -104.63 -0.46 -0.85 16 23 C -0.12 -1.14 9.67 -39.57 -0.38 -1.52 16 24 C -0.09 -0.82 10.04 -39.59 -0.40 -1.21 16 25 C -0.16 -1.57 10.03 -39.52 -0.40 -1.96 16 26 C 0.10 1.19 7.30 -39.42 -0.29 0.90 16 27 F -0.14 -1.88 17.27 2.25 0.04 -1.84 16 28 C -0.12 -1.49 7.92 -39.51 -0.31 -1.80 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.57 6.48 -51.93 -0.34 0.24 16 34 H 0.10 2.69 5.58 -51.93 -0.29 2.40 16 35 H 0.04 0.84 7.86 -51.93 -0.41 0.43 16 36 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.04 0.68 7.83 -51.93 -0.41 0.28 16 39 H 0.06 1.13 6.48 -51.93 -0.34 0.79 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.40 4.12 7.89 -40.82 -0.32 3.80 16 42 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 43 H 0.06 0.59 7.38 -51.93 -0.38 0.21 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.13 0.85 7.94 -52.49 -0.42 0.44 16 46 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 47 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 48 H 0.13 1.78 7.52 -52.49 -0.39 1.38 16 LS Contribution 399.48 15.07 6.02 6.02 Total: -1.00 -33.27 399.48 -8.00 -41.27 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.45 Total: 1.60 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -1.20 Total: 3.06 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.11 Total: -48.98 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.27 Total: -18.39 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.27 -8.00 -41.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332927398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.379 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds