Wall clock time and date at job start Tue Mar 31 2020 22:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00051 * 2 1 4 4 C 1.53004 * 109.47320 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47295 * 64.99374 * 4 3 2 6 6 C 1.36941 * 120.00357 * 270.00688 * 5 4 3 7 7 H 1.07997 * 120.00074 * 141.45842 * 6 5 4 8 8 C 1.38817 * 119.99635 * 321.45377 * 6 5 4 9 9 N 1.31612 * 119.99949 * 338.83472 * 8 6 5 10 10 Si 1.86798 * 119.99745 * 158.83551 * 8 6 5 11 11 H 1.48492 * 109.47222 * 90.00064 * 10 8 6 12 12 H 1.48503 * 109.46871 * 210.00256 * 10 8 6 13 13 H 1.48509 * 109.46981 * 329.99758 * 10 8 6 14 14 C 1.46503 * 119.99682 * 90.00343 * 5 4 3 15 15 C 1.53003 * 109.47100 * 264.70861 * 14 5 4 16 16 N 1.46503 * 109.47100 * 179.97438 * 15 14 5 17 17 C 1.34773 * 120.00078 * 179.97438 * 16 15 14 18 18 O 1.21285 * 120.00127 * 0.02562 * 17 16 15 19 19 C 1.50694 * 120.00143 * 179.97438 * 17 16 15 20 20 H 1.09005 * 109.47201 * 300.00283 * 19 17 16 21 21 C 1.52998 * 109.47155 * 59.99988 * 19 17 16 22 22 C 1.50701 * 109.47096 * 180.02562 * 19 17 16 23 23 C 1.38274 * 119.98244 * 120.00275 * 22 19 17 24 24 C 1.38224 * 120.04489 * 180.02562 * 23 22 19 25 25 C 1.38220 * 120.03009 * 359.97438 * 24 23 22 26 26 C 1.38435 * 119.97379 * 0.02562 * 25 24 23 27 27 F 1.35093 * 120.02751 * 180.02562 * 26 25 24 28 28 C 1.38172 * 119.99073 * 299.72535 * 22 19 17 29 29 H 1.09004 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47127 * 300.00215 * 1 2 3 31 31 H 1.09001 * 109.47087 * 60.00379 * 1 2 3 32 32 H 1.08994 * 109.46965 * 59.99647 * 3 2 1 33 33 H 1.09004 * 109.47070 * 299.99509 * 3 2 1 34 34 H 1.09000 * 109.46446 * 304.99928 * 4 3 2 35 35 H 1.08998 * 109.47253 * 184.99960 * 4 3 2 36 36 H 0.97005 * 119.99785 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.47300 * 144.70926 * 14 5 4 38 38 H 1.08991 * 109.47281 * 24.71003 * 14 5 4 39 39 H 1.09000 * 109.46991 * 59.99876 * 15 14 5 40 40 H 1.09005 * 109.47207 * 300.00130 * 15 14 5 41 41 H 0.96997 * 119.99578 * 0.02562 * 16 15 14 42 42 H 1.09000 * 109.47492 * 300.00546 * 21 19 17 43 43 H 1.09005 * 109.46825 * 60.00065 * 21 19 17 44 44 H 1.09003 * 109.47619 * 179.97438 * 21 19 17 45 45 H 1.07997 * 119.97492 * 0.02562 * 23 22 19 46 46 H 1.08001 * 119.98166 * 180.02562 * 24 23 22 47 47 H 1.07997 * 120.01385 * 180.02562 * 25 24 23 48 48 H 1.08000 * 120.00959 * 0.02562 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9758 0.5644 -1.2526 6 6 4.0968 -0.7971 -1.3368 7 1 3.8068 -1.3101 -2.2418 8 6 4.5923 -1.5177 -0.2587 9 7 5.3199 -0.9147 0.6573 10 14 4.2266 -3.3434 -0.1084 11 1 5.2890 -4.1194 -0.7968 12 1 4.1867 -3.7236 1.3266 13 1 2.9130 -3.6383 -0.7353 14 6 4.2865 1.4006 -2.4148 15 6 3.0584 1.4881 -3.3231 16 7 3.3689 2.3248 -4.4849 17 6 2.4308 2.5444 -5.4273 18 8 1.3293 2.0497 -5.3133 19 6 2.7500 3.4055 -6.6220 20 1 3.0250 4.4054 -6.2862 21 6 3.9160 2.7895 -7.3978 22 6 1.5404 3.4915 -7.5168 23 6 0.9669 4.7204 -7.7871 24 6 -0.1429 4.8007 -8.6071 25 6 -0.6803 3.6528 -9.1584 26 6 -0.1069 2.4220 -8.8884 27 9 -0.6309 1.2994 -9.4270 28 6 1.0084 2.3432 -8.0713 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8901 34 1 3.8514 0.5683 0.8410 35 1 3.9786 2.1765 0.0889 36 1 5.6658 -1.4182 1.4108 37 1 5.1166 0.9606 -2.9675 38 1 4.5625 2.4003 -2.0796 39 1 2.2283 1.9280 -2.7704 40 1 2.7824 0.4882 -3.6583 41 1 4.2500 2.7201 -4.5762 42 1 4.7908 2.7275 -6.7504 43 1 3.6410 1.7896 -7.7336 44 1 4.1467 3.4120 -8.2623 45 1 1.3863 5.6179 -7.3571 46 1 -0.5898 5.7611 -8.8179 47 1 -1.5471 3.7159 -9.7994 48 1 1.4591 1.3840 -7.8633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332927398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:00 Heat of formation + Delta-G solvation = -104.778987 kcal Electronic energy + Delta-G solvation = -29468.426043 eV Core-core repulsion = 25244.771400 eV Total energy + Delta-G solvation = -4223.654643 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.92436 -41.30963 -39.62471 -38.91034 -37.40845 -35.68188 -35.13602 -33.33042 -31.53626 -31.18539 -30.38631 -28.94934 -27.18543 -26.12971 -25.44653 -23.83637 -23.49488 -22.66916 -22.17751 -20.92677 -18.75410 -18.47284 -18.12627 -17.45834 -17.13846 -17.04713 -16.90128 -16.65034 -16.58724 -16.45642 -16.26725 -15.67934 -15.43781 -15.15374 -14.85491 -14.84190 -14.63402 -14.32986 -14.17629 -13.66491 -13.50904 -13.43422 -13.15493 -13.01230 -12.90548 -12.77398 -12.71774 -12.49048 -12.40963 -12.35247 -12.23650 -11.96161 -11.88793 -11.70674 -11.55235 -10.83474 -10.46505 -10.38204 -10.00624 -9.89652 -9.63724 -8.53660 -7.79678 -5.39681 0.17501 0.27442 1.43492 1.47716 1.58183 1.65980 2.17562 2.56024 2.71537 3.17283 3.22210 3.33655 3.54203 3.69298 3.80561 3.94796 4.07587 4.14914 4.22666 4.29547 4.32144 4.35179 4.39903 4.47937 4.48886 4.55820 4.69533 4.71883 4.77593 4.79207 4.86719 4.90023 4.95112 4.97148 5.11315 5.12702 5.18339 5.22843 5.28042 5.36646 5.51922 5.53164 5.70673 5.78339 5.95616 6.45387 6.62661 6.63390 7.22460 7.31609 7.89368 8.38504 9.17839 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002536 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.817461 B =11038.481265 C =11178.692245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.051 3.949 4 C 0.142 3.858 5 N -0.587 5.587 6 C -0.245 4.245 7 H 0.039 0.961 8 C -0.019 4.019 9 N -0.914 5.914 10 Si 0.944 3.056 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.144 3.856 15 C 0.120 3.880 16 N -0.709 5.709 17 C 0.507 3.493 18 O -0.586 6.586 19 C -0.062 4.062 20 H 0.147 0.853 21 C -0.141 4.141 22 C -0.050 4.050 23 C -0.118 4.118 24 C -0.089 4.089 25 C -0.158 4.158 26 C 0.064 3.936 27 F -0.157 7.157 28 C -0.140 4.140 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.250 0.750 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.026 0.974 41 H 0.416 0.584 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.163 0.837 46 H 0.169 0.831 47 H 0.151 0.849 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.500 17.466 -16.438 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.028 4.028 4 C 0.016 3.984 5 N -0.307 5.307 6 C -0.376 4.376 7 H 0.057 0.943 8 C -0.217 4.217 9 N -0.558 5.558 10 Si 0.773 3.227 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.210 1.210 14 C 0.017 3.983 15 C -0.007 4.007 16 N -0.362 5.362 17 C 0.294 3.706 18 O -0.466 6.466 19 C -0.083 4.083 20 H 0.164 0.836 21 C -0.198 4.198 22 C -0.051 4.051 23 C -0.136 4.136 24 C -0.106 4.106 25 C -0.177 4.177 26 C 0.045 3.955 27 F -0.136 7.136 28 C -0.160 4.160 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.044 0.956 41 H 0.253 0.747 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.111 0.889 45 H 0.181 0.819 46 H 0.186 0.814 47 H 0.169 0.831 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.062 16.821 -16.198 24.126 hybrid contribution -0.451 -1.658 0.304 1.745 sum -6.513 15.163 -15.893 22.911 Atomic orbital electron populations 1.22790 0.81833 1.02526 0.99807 1.88131 1.19343 1.28914 1.95156 1.23368 0.97211 0.83912 0.98293 1.21016 0.89241 0.96709 0.91414 1.43668 1.76061 1.02390 1.08570 1.18813 1.35030 0.83251 1.00469 0.94328 1.25524 0.96590 1.00453 0.99100 1.70062 1.34801 1.36708 1.14229 0.85671 0.77842 0.82667 0.76514 1.20950 1.21743 1.21005 1.21035 0.93349 0.95345 0.88594 1.21847 0.99880 0.92691 0.86266 1.45867 1.16479 1.51421 1.22398 1.21205 0.83981 0.81042 0.84347 1.90724 1.24729 1.52566 1.78559 1.20403 0.94860 1.01930 0.91086 0.83580 1.21849 0.95777 1.00817 1.01346 1.19402 0.96473 0.92961 0.96231 1.21516 0.96252 0.97325 0.98521 1.21395 0.95166 0.98790 0.95290 1.21445 1.02233 0.90796 1.03181 1.18041 0.95779 0.83108 0.98568 1.91445 1.86133 1.51335 1.84654 1.20936 0.96702 0.99901 0.98412 0.90045 0.93034 0.94809 0.93267 0.94758 0.91561 0.91872 0.94063 0.93210 0.91223 0.93864 0.95557 0.74661 0.89645 0.93812 0.88887 0.81908 0.81354 0.83099 0.87304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 11.01 113.37 1.25 2.19 16 2 O -0.40 -17.96 10.18 -148.98 -1.52 -19.48 16 3 C 0.05 2.04 6.28 71.98 0.45 2.49 16 4 C 0.14 6.43 5.76 86.38 0.50 6.92 16 5 N -0.59 -28.02 2.41 -702.00 -1.69 -29.71 16 6 C -0.25 -13.50 8.95 84.03 0.75 -12.74 16 7 H 0.04 2.22 7.91 -2.91 -0.02 2.20 16 8 C -0.02 -1.08 4.95 84.86 0.42 -0.66 16 9 N -0.91 -52.78 11.53 21.65 0.25 -52.53 16 10 Si 0.94 46.66 29.60 68.60 2.03 48.70 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 13 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 14 C 0.14 5.38 5.83 86.38 0.50 5.88 16 15 C 0.12 4.32 5.97 86.38 0.52 4.84 16 16 N -0.71 -18.54 5.45 -463.05 -2.52 -21.07 16 17 C 0.51 14.08 7.03 87.66 0.62 14.69 16 18 O -0.59 -22.64 15.13 -3.04 -0.05 -22.69 16 19 C -0.06 -1.07 2.90 -12.29 -0.04 -1.11 16 20 H 0.15 1.43 7.87 -2.38 -0.02 1.41 16 21 C -0.14 -1.94 8.90 71.98 0.64 -1.30 16 22 C -0.05 -1.03 4.39 -19.87 -0.09 -1.12 16 23 C -0.12 -1.75 9.67 22.27 0.22 -1.53 16 24 C -0.09 -1.22 10.04 22.26 0.22 -1.00 16 25 C -0.16 -2.92 10.03 22.31 0.22 -2.69 16 26 C 0.06 1.63 7.30 22.38 0.16 1.79 16 27 F -0.16 -4.46 17.27 44.97 0.78 -3.68 16 28 C -0.14 -3.69 7.92 22.31 0.18 -3.52 16 29 H 0.08 2.64 8.14 -2.38 -0.02 2.63 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.03 1.33 6.48 -2.39 -0.02 1.31 16 34 H 0.07 3.53 5.58 -2.39 -0.01 3.52 16 35 H 0.06 2.50 7.86 -2.39 -0.02 2.48 16 36 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 37 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 38 H 0.07 2.21 7.83 -2.39 -0.02 2.20 16 39 H 0.04 1.69 6.48 -2.39 -0.02 1.68 16 40 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.42 7.56 7.89 -92.71 -0.73 6.83 16 42 H 0.08 0.91 7.56 -2.39 -0.02 0.89 16 43 H 0.04 0.80 7.38 -2.38 -0.02 0.78 16 44 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.16 1.25 7.94 -2.91 -0.02 1.23 16 46 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 47 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 48 H 0.11 3.24 7.52 -2.91 -0.02 3.22 16 Total: -1.00 -76.45 399.48 4.04 -72.41 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.23 Total: 14.92 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 6.53 Total: 13.14 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -3.96 Total: -103.31 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.56 Total: -42.17 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.78 Total: -3.68 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.70 kcal Total: -76.45 4.04 -72.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332927398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.367 kcal (2) G-P(sol) polarization free energy of solvation -76.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds