Wall clock time and date at job start Tue Mar 31 2020 20:36:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52998 * 109.47206 * 2 1
4 4 H 1.09007 * 109.46863 * 304.99893 * 3 2 1
5 5 F 1.39895 * 109.47045 * 64.99778 * 3 2 1
6 6 C 1.50692 * 109.47369 * 185.00188 * 3 2 1
7 7 O 1.21290 * 119.99809 * 315.00011 * 6 3 2
8 8 N 1.34779 * 120.00510 * 134.72216 * 6 3 2
9 9 C 1.46491 * 120.00375 * 180.02562 * 8 6 3
10 10 C 1.52995 * 109.47306 * 180.02562 * 9 8 6
11 11 N 1.46901 * 109.47447 * 179.97438 * 10 9 8
12 12 C 1.46900 * 111.00065 * 66.04511 * 11 10 9
13 13 C 1.46895 * 111.00229 * 190.00053 * 11 10 9
14 14 C 1.50698 * 109.47349 * 170.00052 * 13 11 10
15 15 C 1.38308 * 119.93247 * 269.72519 * 14 13 11
16 16 C 1.38097 * 120.06909 * 179.72206 * 15 14 13
17 17 C 1.38876 * 119.93020 * 0.57234 * 16 15 14
18 18 O 1.35756 * 120.07261 * 179.68419 * 17 16 15
19 19 C 1.34827 * 117.00454 * 174.48782 * 18 17 16
20 20 H 1.07999 * 119.99659 * 5.05871 * 19 18 17
21 21 C 1.38652 * 119.99956 * 185.05519 * 19 18 17
22 22 N 1.31553 * 120.00078 * 359.97438 * 21 19 18
23 23 Si 1.86798 * 119.99843 * 180.02562 * 21 19 18
24 24 H 1.48493 * 109.47669 * 59.99797 * 23 21 19
25 25 H 1.48504 * 109.47386 * 179.97438 * 23 21 19
26 26 H 1.48500 * 109.46922 * 299.99610 * 23 21 19
27 27 C 1.38887 * 119.86351 * 359.70164 * 17 16 15
28 28 C 1.38096 * 119.93044 * 0.02562 * 27 17 16
29 29 H 1.08996 * 109.47215 * 299.99738 * 1 2 3
30 30 H 1.08997 * 109.47132 * 60.00011 * 1 2 3
31 31 H 1.09005 * 109.47168 * 179.97438 * 1 2 3
32 32 H 1.09002 * 109.47079 * 239.99583 * 2 1 3
33 33 H 1.09006 * 109.46984 * 120.00139 * 2 1 3
34 34 H 0.97001 * 119.99677 * 0.02562 * 8 6 3
35 35 H 1.09009 * 109.47164 * 299.99947 * 9 8 6
36 36 H 1.08999 * 109.47388 * 59.99696 * 9 8 6
37 37 H 1.08998 * 109.47303 * 299.99850 * 10 9 8
38 38 H 1.09007 * 109.47061 * 59.99789 * 10 9 8
39 39 H 1.08998 * 109.46832 * 59.99913 * 12 11 10
40 40 H 1.08998 * 109.47523 * 180.02562 * 12 11 10
41 41 H 1.09005 * 109.46830 * 300.00297 * 12 11 10
42 42 H 1.09000 * 109.47412 * 289.99970 * 13 11 10
43 43 H 1.09000 * 109.47250 * 50.00018 * 13 11 10
44 44 H 1.08000 * 119.95965 * 359.97438 * 15 14 13
45 45 H 1.08002 * 120.03606 * 180.27343 * 16 15 14
46 46 H 0.97001 * 119.99954 * 179.97438 * 22 21 19
47 47 H 1.07998 * 120.03570 * 179.97438 * 27 17 16
48 48 H 1.07997 * 119.96584 * 179.97438 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 -0.8419
5 9 1.6699 2.0679 1.1954
6 6 3.5418 1.4443 -0.1239
7 8 4.2064 0.6810 0.5446
8 7 4.1463 2.2902 -0.9815
9 6 5.6063 2.2916 -1.1023
10 6 6.0316 3.3371 -2.1352
11 7 7.4956 3.3389 -2.2559
12 6 7.9788 2.0722 -2.8215
13 6 7.9566 4.4820 -3.0550
14 6 9.4561 4.5933 -2.9544
15 6 10.0255 5.3637 -1.9568
16 6 11.3994 5.4630 -1.8585
17 6 12.2092 4.7979 -2.7699
18 8 13.5600 4.8987 -2.6798
19 6 14.2882 4.1389 -3.5226
20 1 13.7949 3.5502 -4.2819
21 6 15.6702 4.1133 -3.4145
22 7 16.2711 4.8308 -2.4899
23 14 16.6791 3.0611 -4.5826
24 1 16.4367 3.5010 -5.9800
25 1 18.1214 3.2082 -4.2611
26 1 16.2814 1.6379 -4.4356
27 6 11.6343 4.0297 -3.7740
28 6 10.2598 3.9298 -3.8636
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 3.6147 2.8981 -1.5188
35 1 6.0506 2.5336 -0.1368
36 1 5.9454 1.3061 -1.4215
37 1 5.5874 3.0956 -3.1008
38 1 5.6925 4.3225 -1.8155
39 1 7.5466 1.9282 -3.8118
40 1 9.0657 2.1002 -2.8996
41 1 7.6826 1.2481 -2.1725
42 1 7.6723 4.3352 -4.0970
43 1 7.4983 5.3967 -2.6788
44 1 9.3951 5.8847 -1.2516
45 1 11.8436 6.0611 -1.0766
46 1 17.2380 4.8126 -2.4141
47 1 12.2613 3.5117 -4.4845
48 1 9.8121 3.3329 -4.6444
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001420292909.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:36:19
Heat of formation + Delta-G solvation = -88.545570 kcal
Electronic energy + Delta-G solvation = -27854.813286 eV
Core-core repulsion = 23631.862576 eV
Total energy + Delta-G solvation = -4222.950709 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-48.33124 -40.05594 -39.22525 -37.97136 -36.34151 -34.93386 -34.48572 -32.34834
-30.85318 -30.19904 -29.23756 -27.72124 -26.76104 -25.42858 -23.89196 -22.48413
-21.96892 -21.51479 -20.91241 -20.27126 -18.20031 -17.98438 -17.39266 -16.94692
-16.57206 -16.15905 -15.81210 -15.25299 -15.11524 -14.95914 -14.62410 -14.55016
-14.29105 -14.11009 -13.72746 -13.67006 -13.51329 -13.37437 -13.21437 -12.80282
-12.70412 -12.44543 -12.40962 -12.17749 -11.84520 -11.68230 -11.62555 -11.54986
-11.43010 -11.40539 -11.19469 -10.76935 -10.67476 -10.60667 -10.44367 -10.19431
-9.52500 -9.34607 -8.84332 -8.41178 -8.16537 -7.19047 -6.45672 -4.04697
1.99325 2.19990 2.23074 2.50398 3.12175 3.13332 3.16287 3.84309
3.92206 3.96021 4.05008 4.15320 4.35745 4.55483 4.62634 4.76555
4.80699 4.89997 5.08163 5.11202 5.11826 5.13861 5.26914 5.32394
5.39113 5.47049 5.51843 5.55475 5.58339 5.66119 5.67959 5.75113
5.75933 5.86982 5.91234 6.08511 6.20613 6.41117 6.69389 6.86393
6.89778 6.91946 6.99962 7.08836 7.25537 7.37738 7.43611 7.63163
7.81996 7.99022 8.99729 9.69875 10.72185
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.026404 B = 0.001573 C = 0.001549
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1060.171509 B =17798.184718 C =18072.524596
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.142 4.142
3 C 0.085 3.915
4 H 0.100 0.900
5 F -0.189 7.189
6 C 0.490 3.510
7 O -0.516 6.516
8 N -0.721 5.721
9 C 0.118 3.882
10 C 0.044 3.956
11 N -0.532 5.532
12 C 0.017 3.983
13 C 0.116 3.884
14 C -0.182 4.182
15 C -0.052 4.052
16 C -0.194 4.194
17 C 0.156 3.844
18 O -0.177 6.177
19 C -0.393 4.393
20 H 0.091 0.909
21 C 0.040 3.960
22 N -0.862 5.862
23 Si 0.941 3.059
24 H -0.270 1.270
25 H -0.278 1.278
26 H -0.270 1.270
27 C -0.235 4.235
28 C -0.064 4.064
29 H 0.062 0.938
30 H 0.058 0.942
31 H 0.065 0.935
32 H 0.084 0.916
33 H 0.088 0.912
34 H 0.402 0.598
35 H 0.082 0.918
36 H 0.072 0.928
37 H 0.037 0.963
38 H 0.080 0.920
39 H 0.022 0.978
40 H 0.083 0.917
41 H 0.065 0.935
42 H 0.033 0.967
43 H 0.074 0.926
44 H 0.111 0.889
45 H 0.116 0.884
46 H 0.271 0.729
47 H 0.126 0.874
48 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.249 -5.557 -1.161 29.795
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.180 4.180
3 C 0.045 3.955
4 H 0.117 0.883
5 F -0.170 7.170
6 C 0.273 3.727
7 O -0.390 6.390
8 N -0.373 5.373
9 C -0.006 4.006
10 C -0.084 4.084
11 N -0.256 5.256
12 C -0.131 4.131
13 C -0.011 4.011
14 C -0.184 4.184
15 C -0.070 4.070
16 C -0.214 4.214
17 C 0.102 3.898
18 O -0.081 6.081
19 C -0.469 4.469
20 H 0.108 0.892
21 C -0.165 4.165
22 N -0.497 5.497
23 Si 0.765 3.235
24 H -0.195 1.195
25 H -0.203 1.203
26 H -0.195 1.195
27 C -0.254 4.254
28 C -0.083 4.083
29 H 0.082 0.918
30 H 0.077 0.923
31 H 0.084 0.916
32 H 0.103 0.897
33 H 0.107 0.893
34 H 0.236 0.764
35 H 0.100 0.900
36 H 0.091 0.909
37 H 0.055 0.945
38 H 0.098 0.902
39 H 0.041 0.959
40 H 0.102 0.898
41 H 0.084 0.916
42 H 0.051 0.949
43 H 0.092 0.908
44 H 0.129 0.871
45 H 0.134 0.866
46 H 0.080 0.920
47 H 0.143 0.857
48 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -28.145 -5.864 0.050 28.749
hybrid contribution -0.011 -0.283 -1.684 1.707
sum -28.156 -6.147 -1.634 28.866
Atomic orbital electron populations
1.21778 0.94021 1.02779 1.02533 1.22005 0.97365 0.93441 1.05186
1.21624 0.91822 0.96424 0.85629 0.88260 1.92895 1.91995 1.83864
1.48229 1.20974 0.90387 0.80990 0.80338 1.90773 1.66063 1.38840
1.43357 1.46004 1.08633 1.39860 1.42849 1.21443 0.78302 0.99963
1.00877 1.22226 0.89640 0.99350 0.97214 1.61933 1.07750 1.03595
1.52347 1.22544 1.02668 0.91007 0.96865 1.20804 0.93134 0.92607
0.94522 1.19015 0.93142 1.05687 1.00519 1.20449 0.93411 0.97010
0.96164 1.20220 0.92605 1.06768 1.01757 1.19407 0.85120 0.92597
0.92638 1.83980 1.11509 1.57600 1.54971 1.21269 0.88483 1.24834
1.12311 0.89150 1.25282 0.95941 0.97574 0.97659 1.70027 1.10235
1.37829 1.31565 0.85789 0.78559 0.79607 0.79517 1.19536 1.20255
1.19507 1.21115 0.94842 1.06820 1.02660 1.20578 0.93085 0.97368
0.97279 0.91847 0.92323 0.91606 0.89745 0.89317 0.76412 0.90014
0.90927 0.94464 0.90169 0.95942 0.89833 0.91605 0.94854 0.90767
0.87081 0.86555 0.91952 0.85663 0.87967
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.67 9.83 37.16 0.37 -0.30 16
2 C -0.14 -0.84 5.41 -26.73 -0.14 -0.99 16
3 C 0.08 0.55 3.77 -27.89 -0.11 0.45 16
4 H 0.10 0.29 7.99 -51.92 -0.42 -0.12 16
5 F -0.19 -1.72 16.75 2.25 0.04 -1.68 16
6 C 0.49 4.59 7.17 -10.99 -0.08 4.51 16
7 O -0.52 -7.15 16.61 5.55 0.09 -7.06 16
8 N -0.72 -5.17 5.56 -60.30 -0.33 -5.50 16
9 C 0.12 1.08 5.60 -4.05 -0.02 1.05 16
10 C 0.04 0.37 5.07 -3.83 -0.02 0.35 16
11 N -0.53 -6.23 4.75 -244.37 -1.16 -7.40 16
12 C 0.02 0.20 8.97 60.06 0.54 0.74 16
13 C 0.12 1.44 5.12 -4.98 -0.03 1.41 16
14 C -0.18 -2.97 4.89 -104.57 -0.51 -3.48 16
15 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16
16 C -0.19 -4.08 9.99 -39.40 -0.39 -4.47 16
17 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16
18 O -0.18 -5.06 9.76 0.04 0.00 -5.06 16
19 C -0.39 -10.93 9.49 30.89 0.29 -10.64 16
20 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16
21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16
22 N -0.86 -25.24 13.67 55.48 0.76 -24.48 16
23 Si 0.94 20.43 29.55 -169.99 -5.02 15.40 16
24 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16
25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16
26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16
27 C -0.24 -5.00 9.17 -39.39 -0.36 -5.36 16
28 C -0.06 -1.13 7.89 -39.61 -0.31 -1.44 16
29 H 0.06 0.32 7.93 -51.93 -0.41 -0.10 16
30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16
31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16
32 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16
33 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16
34 H 0.40 1.53 8.36 -40.82 -0.34 1.19 16
35 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16
36 H 0.07 0.74 6.55 -51.93 -0.34 0.40 16
37 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16
38 H 0.08 0.60 7.93 -51.93 -0.41 0.18 16
39 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16
40 H 0.08 1.16 5.89 -51.93 -0.31 0.86 16
41 H 0.07 0.72 6.47 -51.93 -0.34 0.38 16
42 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16
43 H 0.07 0.83 7.87 -51.93 -0.41 0.42 16
44 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16
45 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16
46 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16
47 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16
48 H 0.10 1.53 7.98 -52.49 -0.42 1.11 16
LS Contribution 399.37 15.07 6.02 6.02
Total: -1.00 -33.46 399.37 -8.44 -41.90
By element:
Atomic # 1 Polarization: 10.14 SS G_CDS: -7.31 Total: 2.83 kcal
Atomic # 6 Polarization: -13.45 SS G_CDS: -1.52 Total: -14.97 kcal
Atomic # 7 Polarization: -36.64 SS G_CDS: -0.74 Total: -37.38 kcal
Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal
Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal
Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -33.46 -8.44 -41.90 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001420292909.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.645 kcal
(2) G-P(sol) polarization free energy of solvation -33.458 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.103 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.546 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds