Wall clock time and date at job start Tue Mar 31 2020 20:36:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52998 * 109.47206 * 2 1
4 4 H 1.09007 * 109.46863 * 304.99893 * 3 2 1
5 5 F 1.39895 * 109.47045 * 64.99778 * 3 2 1
6 6 C 1.50692 * 109.47369 * 185.00188 * 3 2 1
7 7 O 1.21290 * 119.99809 * 315.00011 * 6 3 2
8 8 N 1.34779 * 120.00510 * 134.72216 * 6 3 2
9 9 C 1.46491 * 120.00375 * 180.02562 * 8 6 3
10 10 C 1.52995 * 109.47306 * 180.02562 * 9 8 6
11 11 N 1.46901 * 109.47447 * 179.97438 * 10 9 8
12 12 C 1.46900 * 111.00065 * 66.04511 * 11 10 9
13 13 C 1.46895 * 111.00229 * 190.00053 * 11 10 9
14 14 C 1.50698 * 109.47349 * 170.00052 * 13 11 10
15 15 C 1.38308 * 119.93247 * 269.72519 * 14 13 11
16 16 C 1.38097 * 120.06909 * 179.72206 * 15 14 13
17 17 C 1.38876 * 119.93020 * 0.57234 * 16 15 14
18 18 O 1.35756 * 120.07261 * 179.68419 * 17 16 15
19 19 C 1.34827 * 117.00454 * 174.48782 * 18 17 16
20 20 H 1.07999 * 119.99659 * 5.05871 * 19 18 17
21 21 C 1.38652 * 119.99956 * 185.05519 * 19 18 17
22 22 N 1.31553 * 120.00078 * 359.97438 * 21 19 18
23 23 Si 1.86798 * 119.99843 * 180.02562 * 21 19 18
24 24 H 1.48493 * 109.47669 * 59.99797 * 23 21 19
25 25 H 1.48504 * 109.47386 * 179.97438 * 23 21 19
26 26 H 1.48500 * 109.46922 * 299.99610 * 23 21 19
27 27 C 1.38887 * 119.86351 * 359.70164 * 17 16 15
28 28 C 1.38096 * 119.93044 * 0.02562 * 27 17 16
29 29 H 1.08996 * 109.47215 * 299.99738 * 1 2 3
30 30 H 1.08997 * 109.47132 * 60.00011 * 1 2 3
31 31 H 1.09005 * 109.47168 * 179.97438 * 1 2 3
32 32 H 1.09002 * 109.47079 * 239.99583 * 2 1 3
33 33 H 1.09006 * 109.46984 * 120.00139 * 2 1 3
34 34 H 0.97001 * 119.99677 * 0.02562 * 8 6 3
35 35 H 1.09009 * 109.47164 * 299.99947 * 9 8 6
36 36 H 1.08999 * 109.47388 * 59.99696 * 9 8 6
37 37 H 1.08998 * 109.47303 * 299.99850 * 10 9 8
38 38 H 1.09007 * 109.47061 * 59.99789 * 10 9 8
39 39 H 1.08998 * 109.46832 * 59.99913 * 12 11 10
40 40 H 1.08998 * 109.47523 * 180.02562 * 12 11 10
41 41 H 1.09005 * 109.46830 * 300.00297 * 12 11 10
42 42 H 1.09000 * 109.47412 * 289.99970 * 13 11 10
43 43 H 1.09000 * 109.47250 * 50.00018 * 13 11 10
44 44 H 1.08000 * 119.95965 * 359.97438 * 15 14 13
45 45 H 1.08002 * 120.03606 * 180.27343 * 16 15 14
46 46 H 0.97001 * 119.99954 * 179.97438 * 22 21 19
47 47 H 1.07998 * 120.03570 * 179.97438 * 27 17 16
48 48 H 1.07997 * 119.96584 * 179.97438 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 -0.8419
5 9 1.6699 2.0679 1.1954
6 6 3.5418 1.4443 -0.1239
7 8 4.2064 0.6810 0.5446
8 7 4.1463 2.2902 -0.9815
9 6 5.6063 2.2916 -1.1023
10 6 6.0316 3.3371 -2.1352
11 7 7.4956 3.3389 -2.2559
12 6 7.9788 2.0722 -2.8215
13 6 7.9566 4.4820 -3.0550
14 6 9.4561 4.5933 -2.9544
15 6 10.0255 5.3637 -1.9568
16 6 11.3994 5.4630 -1.8585
17 6 12.2092 4.7979 -2.7699
18 8 13.5600 4.8987 -2.6798
19 6 14.2882 4.1389 -3.5226
20 1 13.7949 3.5502 -4.2819
21 6 15.6702 4.1133 -3.4145
22 7 16.2711 4.8308 -2.4899
23 14 16.6791 3.0611 -4.5826
24 1 16.4367 3.5010 -5.9800
25 1 18.1214 3.2082 -4.2611
26 1 16.2814 1.6379 -4.4356
27 6 11.6343 4.0297 -3.7740
28 6 10.2598 3.9298 -3.8636
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 3.6147 2.8981 -1.5188
35 1 6.0506 2.5336 -0.1368
36 1 5.9454 1.3061 -1.4215
37 1 5.5874 3.0956 -3.1008
38 1 5.6925 4.3225 -1.8155
39 1 7.5466 1.9282 -3.8118
40 1 9.0657 2.1002 -2.8996
41 1 7.6826 1.2481 -2.1725
42 1 7.6723 4.3352 -4.0970
43 1 7.4983 5.3967 -2.6788
44 1 9.3951 5.8847 -1.2516
45 1 11.8436 6.0611 -1.0766
46 1 17.2380 4.8126 -2.4141
47 1 12.2613 3.5117 -4.4845
48 1 9.8121 3.3329 -4.6444
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001420292909.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:36:18
Heat of formation + Delta-G solvation = -112.236561 kcal
Electronic energy + Delta-G solvation = -27855.840604 eV
Core-core repulsion = 23631.862576 eV
Total energy + Delta-G solvation = -4223.978028 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-48.94280 -40.90606 -40.73168 -39.21216 -37.73059 -35.81536 -34.95650 -34.29711
-32.04609 -31.75932 -30.19159 -28.35757 -27.96316 -27.19427 -24.92422 -23.57385
-23.08896 -22.37967 -21.82403 -21.43659 -19.82352 -18.85447 -18.78340 -18.00852
-17.26637 -16.88988 -16.60827 -16.51389 -16.26940 -16.15295 -15.96419 -15.56934
-15.43996 -15.27128 -15.11296 -14.71386 -14.63909 -14.36483 -14.23692 -13.96779
-13.89537 -13.57398 -13.28182 -13.00332 -12.96616 -12.87019 -12.74590 -12.56629
-12.46554 -12.24224 -12.14568 -12.06954 -12.02955 -11.93775 -11.83819 -11.15769
-10.94868 -10.77982 -10.25376 -9.73942 -9.28427 -8.87122 -8.46477 -6.14810
0.62747 0.69100 1.27514 1.34471 1.45167 1.50887 1.82393 2.17990
2.77135 3.05453 3.30629 3.42553 3.54856 3.58221 3.69475 3.84774
3.90178 4.01280 4.06907 4.09697 4.23261 4.40326 4.42160 4.46935
4.50874 4.53793 4.61681 4.64356 4.73592 4.80674 4.82794 4.87650
4.95949 5.04503 5.11247 5.14359 5.14464 5.16990 5.24561 5.33093
5.35078 5.59737 5.73322 5.81167 6.03561 6.07586 6.14962 6.27530
6.33538 6.98097 7.01405 7.79870 8.76617
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.026404 B = 0.001573 C = 0.001549
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1060.171509 B =17798.184718 C =18072.524596
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.142 4.142
3 C 0.086 3.914
4 H 0.147 0.853
5 F -0.205 7.205
6 C 0.485 3.515
7 O -0.571 6.571
8 N -0.702 5.702
9 C 0.123 3.877
10 C 0.053 3.947
11 N -0.551 5.551
12 C 0.018 3.982
13 C 0.119 3.881
14 C -0.155 4.155
15 C -0.048 4.048
16 C -0.208 4.208
17 C 0.113 3.887
18 O -0.235 6.235
19 C -0.414 4.414
20 H 0.101 0.899
21 C -0.023 4.023
22 N -0.921 5.921
23 Si 1.018 2.982
24 H -0.256 1.256
25 H -0.272 1.272
26 H -0.258 1.258
27 C -0.244 4.244
28 C -0.059 4.059
29 H 0.054 0.946
30 H 0.078 0.922
31 H 0.070 0.930
32 H 0.094 0.906
33 H 0.062 0.938
34 H 0.422 0.578
35 H 0.055 0.945
36 H 0.060 0.940
37 H 0.062 0.938
38 H 0.099 0.901
39 H 0.041 0.959
40 H 0.057 0.943
41 H 0.067 0.933
42 H 0.054 0.946
43 H 0.098 0.902
44 H 0.145 0.855
45 H 0.109 0.891
46 H 0.272 0.728
47 H 0.116 0.884
48 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -33.503 -5.860 -3.470 34.188
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.181 4.181
3 C 0.047 3.953
4 H 0.165 0.835
5 F -0.186 7.186
6 C 0.269 3.731
7 O -0.449 6.449
8 N -0.355 5.355
9 C -0.002 4.002
10 C -0.074 4.074
11 N -0.275 5.275
12 C -0.130 4.130
13 C -0.008 4.008
14 C -0.156 4.156
15 C -0.066 4.066
16 C -0.228 4.228
17 C 0.062 3.938
18 O -0.142 6.142
19 C -0.490 4.490
20 H 0.119 0.881
21 C -0.221 4.221
22 N -0.559 5.559
23 Si 0.837 3.163
24 H -0.180 1.180
25 H -0.197 1.197
26 H -0.183 1.183
27 C -0.264 4.264
28 C -0.077 4.077
29 H 0.073 0.927
30 H 0.097 0.903
31 H 0.089 0.911
32 H 0.113 0.887
33 H 0.080 0.920
34 H 0.260 0.740
35 H 0.073 0.927
36 H 0.079 0.921
37 H 0.080 0.920
38 H 0.117 0.883
39 H 0.060 0.940
40 H 0.075 0.925
41 H 0.085 0.915
42 H 0.073 0.927
43 H 0.116 0.884
44 H 0.163 0.837
45 H 0.127 0.873
46 H 0.081 0.919
47 H 0.134 0.866
48 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -32.496 -6.137 -2.291 33.150
hybrid contribution 0.899 -0.174 -0.911 1.292
sum -31.597 -6.310 -3.202 32.380
Atomic orbital electron populations
1.21766 0.92566 1.03331 1.03066 1.22014 0.98533 0.93065 1.04452
1.21867 0.89774 0.97321 0.86329 0.83550 1.92865 1.91918 1.84164
1.49613 1.21578 0.91607 0.80241 0.79627 1.90753 1.67477 1.41129
1.45552 1.45832 1.08037 1.39403 1.42274 1.21253 0.79269 0.99763
0.99889 1.22203 0.87400 0.99907 0.97935 1.61777 1.10185 1.03138
1.52422 1.22488 1.01060 0.91344 0.98078 1.20828 0.89657 0.94062
0.96236 1.19607 0.95925 1.02102 0.97931 1.20859 0.92005 0.96821
0.96923 1.20472 0.94205 1.06731 1.01365 1.19963 0.84237 0.94808
0.94762 1.83941 1.13664 1.59832 1.56755 1.21774 0.89273 1.25201
1.12764 0.88143 1.26588 0.96905 0.98963 0.99606 1.70182 1.10524
1.40749 1.34486 0.84656 0.76514 0.77788 0.77303 1.18035 1.19652
1.18287 1.21224 0.96670 1.06537 1.01933 1.20931 0.91442 0.97133
0.98232 0.92713 0.90319 0.91139 0.88712 0.91962 0.73980 0.92658
0.92131 0.92008 0.88299 0.94012 0.92452 0.91459 0.92747 0.88405
0.83682 0.87284 0.91892 0.86571 0.84578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.97 9.83 71.98 0.71 -0.26 16
2 C -0.14 -1.47 5.41 30.59 0.17 -1.31 16
3 C 0.09 0.92 3.77 29.84 0.11 1.03 16
4 H 0.15 0.18 7.99 -2.38 -0.02 0.16 16
5 F -0.20 -3.41 16.75 44.97 0.75 -2.65 16
6 C 0.48 8.27 7.17 87.65 0.63 8.90 16
7 O -0.57 -15.90 16.61 -3.06 -0.05 -15.95 16
8 N -0.70 -7.87 5.56 -463.08 -2.57 -10.44 16
9 C 0.12 1.93 5.60 86.38 0.48 2.41 16
10 C 0.05 0.64 5.07 86.30 0.44 1.08 16
11 N -0.55 -10.55 4.75 -927.06 -4.41 -14.96 16
12 C 0.02 0.37 8.97 127.69 1.15 1.52 16
13 C 0.12 2.31 5.12 85.56 0.44 2.75 16
14 C -0.15 -4.52 4.89 -19.83 -0.10 -4.62 16
15 C -0.05 -1.58 9.69 22.25 0.22 -1.36 16
16 C -0.21 -8.98 9.99 22.39 0.22 -8.75 16
17 C 0.11 5.66 6.65 22.58 0.15 5.81 16
18 O -0.24 -14.40 9.76 -22.78 -0.22 -14.62 16
19 C -0.41 -24.38 9.49 67.92 0.64 -23.74 16
20 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16
21 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16
22 N -0.92 -57.23 13.67 21.61 0.30 -56.93 16
23 Si 1.02 43.16 29.55 68.60 2.03 45.19 16
24 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16
25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16
26 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16
27 C -0.24 -10.55 9.17 22.39 0.21 -10.34 16
28 C -0.06 -1.93 7.89 22.25 0.18 -1.76 16
29 H 0.05 0.46 7.93 -2.39 -0.02 0.44 16
30 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16
31 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16
32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16
33 H 0.06 0.97 8.05 -2.38 -0.02 0.95 16
34 H 0.42 1.23 8.36 -92.71 -0.78 0.45 16
35 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16
36 H 0.06 1.12 6.55 -2.39 -0.02 1.10 16
37 H 0.06 0.51 8.12 -2.39 -0.02 0.49 16
38 H 0.10 0.88 7.93 -2.38 -0.02 0.86 16
39 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16
40 H 0.06 1.46 5.89 -2.39 -0.01 1.44 16
41 H 0.07 1.33 6.47 -2.38 -0.02 1.32 16
42 H 0.05 0.90 8.06 -2.39 -0.02 0.88 16
43 H 0.10 1.55 7.87 -2.39 -0.02 1.53 16
44 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16
45 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16
46 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16
47 H 0.12 5.12 5.64 -2.91 -0.02 5.11 16
48 H 0.14 3.56 7.98 -2.91 -0.02 3.54 16
Total: -1.00 -81.40 399.37 2.12 -79.28
By element:
Atomic # 1 Polarization: 20.41 SS G_CDS: 0.20 Total: 20.61 kcal
Atomic # 6 Polarization: -35.62 SS G_CDS: 6.10 Total: -29.52 kcal
Atomic # 7 Polarization: -75.65 SS G_CDS: -6.68 Total: -82.33 kcal
Atomic # 8 Polarization: -30.30 SS G_CDS: -0.27 Total: -30.57 kcal
Atomic # 9 Polarization: -3.41 SS G_CDS: 0.75 Total: -2.65 kcal
Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal
Total: -81.40 2.12 -79.28 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001420292909.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.960 kcal
(2) G-P(sol) polarization free energy of solvation -81.400 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.360 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.277 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.237 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds