Wall clock time and date at job start Tue Mar 31 2020 20:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47206 * 2 1 4 4 H 1.09007 * 109.46863 * 304.99893 * 3 2 1 5 5 F 1.39895 * 109.47045 * 64.99778 * 3 2 1 6 6 C 1.50692 * 109.47369 * 185.00188 * 3 2 1 7 7 O 1.21290 * 119.99809 * 315.00011 * 6 3 2 8 8 N 1.34779 * 120.00510 * 134.72216 * 6 3 2 9 9 C 1.46491 * 120.00375 * 180.02562 * 8 6 3 10 10 C 1.52995 * 109.47306 * 180.02562 * 9 8 6 11 11 N 1.46901 * 109.47447 * 179.97438 * 10 9 8 12 12 C 1.46900 * 111.00065 * 66.04511 * 11 10 9 13 13 C 1.46895 * 111.00229 * 190.00053 * 11 10 9 14 14 C 1.50698 * 109.47349 * 170.00052 * 13 11 10 15 15 C 1.38308 * 119.93247 * 269.72519 * 14 13 11 16 16 C 1.38097 * 120.06909 * 179.72206 * 15 14 13 17 17 C 1.38876 * 119.93020 * 0.57234 * 16 15 14 18 18 O 1.35756 * 120.07261 * 179.68419 * 17 16 15 19 19 C 1.34827 * 117.00454 * 174.48782 * 18 17 16 20 20 H 1.07999 * 119.99659 * 5.05871 * 19 18 17 21 21 C 1.38652 * 119.99956 * 185.05519 * 19 18 17 22 22 N 1.31553 * 120.00078 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99843 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47669 * 59.99797 * 23 21 19 25 25 H 1.48504 * 109.47386 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46922 * 299.99610 * 23 21 19 27 27 C 1.38887 * 119.86351 * 359.70164 * 17 16 15 28 28 C 1.38096 * 119.93044 * 0.02562 * 27 17 16 29 29 H 1.08996 * 109.47215 * 299.99738 * 1 2 3 30 30 H 1.08997 * 109.47132 * 60.00011 * 1 2 3 31 31 H 1.09005 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47079 * 239.99583 * 2 1 3 33 33 H 1.09006 * 109.46984 * 120.00139 * 2 1 3 34 34 H 0.97001 * 119.99677 * 0.02562 * 8 6 3 35 35 H 1.09009 * 109.47164 * 299.99947 * 9 8 6 36 36 H 1.08999 * 109.47388 * 59.99696 * 9 8 6 37 37 H 1.08998 * 109.47303 * 299.99850 * 10 9 8 38 38 H 1.09007 * 109.47061 * 59.99789 * 10 9 8 39 39 H 1.08998 * 109.46832 * 59.99913 * 12 11 10 40 40 H 1.08998 * 109.47523 * 180.02562 * 12 11 10 41 41 H 1.09005 * 109.46830 * 300.00297 * 12 11 10 42 42 H 1.09000 * 109.47412 * 289.99970 * 13 11 10 43 43 H 1.09000 * 109.47250 * 50.00018 * 13 11 10 44 44 H 1.08000 * 119.95965 * 359.97438 * 15 14 13 45 45 H 1.08002 * 120.03606 * 180.27343 * 16 15 14 46 46 H 0.97001 * 119.99954 * 179.97438 * 22 21 19 47 47 H 1.07998 * 120.03570 * 179.97438 * 27 17 16 48 48 H 1.07997 * 119.96584 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 9 1.6699 2.0679 1.1954 6 6 3.5418 1.4443 -0.1239 7 8 4.2064 0.6810 0.5446 8 7 4.1463 2.2902 -0.9815 9 6 5.6063 2.2916 -1.1023 10 6 6.0316 3.3371 -2.1352 11 7 7.4956 3.3389 -2.2559 12 6 7.9788 2.0722 -2.8215 13 6 7.9566 4.4820 -3.0550 14 6 9.4561 4.5933 -2.9544 15 6 10.0255 5.3637 -1.9568 16 6 11.3994 5.4630 -1.8585 17 6 12.2092 4.7979 -2.7699 18 8 13.5600 4.8987 -2.6798 19 6 14.2882 4.1389 -3.5226 20 1 13.7949 3.5502 -4.2819 21 6 15.6702 4.1133 -3.4145 22 7 16.2711 4.8308 -2.4899 23 14 16.6791 3.0611 -4.5826 24 1 16.4367 3.5010 -5.9800 25 1 18.1214 3.2082 -4.2611 26 1 16.2814 1.6379 -4.4356 27 6 11.6343 4.0297 -3.7740 28 6 10.2598 3.9298 -3.8636 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.6147 2.8981 -1.5188 35 1 6.0506 2.5336 -0.1368 36 1 5.9454 1.3061 -1.4215 37 1 5.5874 3.0956 -3.1008 38 1 5.6925 4.3225 -1.8155 39 1 7.5466 1.9282 -3.8118 40 1 9.0657 2.1002 -2.8996 41 1 7.6826 1.2481 -2.1725 42 1 7.6723 4.3352 -4.0970 43 1 7.4983 5.3967 -2.6788 44 1 9.3951 5.8847 -1.2516 45 1 11.8436 6.0611 -1.0766 46 1 17.2380 4.8126 -2.4141 47 1 12.2613 3.5117 -4.4845 48 1 9.8121 3.3329 -4.6444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001420292909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:18 Heat of formation + Delta-G solvation = -112.236561 kcal Electronic energy + Delta-G solvation = -27855.840604 eV Core-core repulsion = 23631.862576 eV Total energy + Delta-G solvation = -4223.978028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.94280 -40.90606 -40.73168 -39.21216 -37.73059 -35.81536 -34.95650 -34.29711 -32.04609 -31.75932 -30.19159 -28.35757 -27.96316 -27.19427 -24.92422 -23.57385 -23.08896 -22.37967 -21.82403 -21.43659 -19.82352 -18.85447 -18.78340 -18.00852 -17.26637 -16.88988 -16.60827 -16.51389 -16.26940 -16.15295 -15.96419 -15.56934 -15.43996 -15.27128 -15.11296 -14.71386 -14.63909 -14.36483 -14.23692 -13.96779 -13.89537 -13.57398 -13.28182 -13.00332 -12.96616 -12.87019 -12.74590 -12.56629 -12.46554 -12.24224 -12.14568 -12.06954 -12.02955 -11.93775 -11.83819 -11.15769 -10.94868 -10.77982 -10.25376 -9.73942 -9.28427 -8.87122 -8.46477 -6.14810 0.62747 0.69100 1.27514 1.34471 1.45167 1.50887 1.82393 2.17990 2.77135 3.05453 3.30629 3.42553 3.54856 3.58221 3.69475 3.84774 3.90178 4.01280 4.06907 4.09697 4.23261 4.40326 4.42160 4.46935 4.50874 4.53793 4.61681 4.64356 4.73592 4.80674 4.82794 4.87650 4.95949 5.04503 5.11247 5.14359 5.14464 5.16990 5.24561 5.33093 5.35078 5.59737 5.73322 5.81167 6.03561 6.07586 6.14962 6.27530 6.33538 6.98097 7.01405 7.79870 8.76617 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026404 B = 0.001573 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.171509 B =17798.184718 C =18072.524596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.142 4.142 3 C 0.086 3.914 4 H 0.147 0.853 5 F -0.205 7.205 6 C 0.485 3.515 7 O -0.571 6.571 8 N -0.702 5.702 9 C 0.123 3.877 10 C 0.053 3.947 11 N -0.551 5.551 12 C 0.018 3.982 13 C 0.119 3.881 14 C -0.155 4.155 15 C -0.048 4.048 16 C -0.208 4.208 17 C 0.113 3.887 18 O -0.235 6.235 19 C -0.414 4.414 20 H 0.101 0.899 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.256 1.256 25 H -0.272 1.272 26 H -0.258 1.258 27 C -0.244 4.244 28 C -0.059 4.059 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.422 0.578 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.041 0.959 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.098 0.902 44 H 0.145 0.855 45 H 0.109 0.891 46 H 0.272 0.728 47 H 0.116 0.884 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.503 -5.860 -3.470 34.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.047 3.953 4 H 0.165 0.835 5 F -0.186 7.186 6 C 0.269 3.731 7 O -0.449 6.449 8 N -0.355 5.355 9 C -0.002 4.002 10 C -0.074 4.074 11 N -0.275 5.275 12 C -0.130 4.130 13 C -0.008 4.008 14 C -0.156 4.156 15 C -0.066 4.066 16 C -0.228 4.228 17 C 0.062 3.938 18 O -0.142 6.142 19 C -0.490 4.490 20 H 0.119 0.881 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.180 1.180 25 H -0.197 1.197 26 H -0.183 1.183 27 C -0.264 4.264 28 C -0.077 4.077 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.260 0.740 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.163 0.837 45 H 0.127 0.873 46 H 0.081 0.919 47 H 0.134 0.866 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -32.496 -6.137 -2.291 33.150 hybrid contribution 0.899 -0.174 -0.911 1.292 sum -31.597 -6.310 -3.202 32.380 Atomic orbital electron populations 1.21766 0.92566 1.03331 1.03066 1.22014 0.98533 0.93065 1.04452 1.21867 0.89774 0.97321 0.86329 0.83550 1.92865 1.91918 1.84164 1.49613 1.21578 0.91607 0.80241 0.79627 1.90753 1.67477 1.41129 1.45552 1.45832 1.08037 1.39403 1.42274 1.21253 0.79269 0.99763 0.99889 1.22203 0.87400 0.99907 0.97935 1.61777 1.10185 1.03138 1.52422 1.22488 1.01060 0.91344 0.98078 1.20828 0.89657 0.94062 0.96236 1.19607 0.95925 1.02102 0.97931 1.20859 0.92005 0.96821 0.96923 1.20472 0.94205 1.06731 1.01365 1.19963 0.84237 0.94808 0.94762 1.83941 1.13664 1.59832 1.56755 1.21774 0.89273 1.25201 1.12764 0.88143 1.26588 0.96905 0.98963 0.99606 1.70182 1.10524 1.40749 1.34486 0.84656 0.76514 0.77788 0.77303 1.18035 1.19652 1.18287 1.21224 0.96670 1.06537 1.01933 1.20931 0.91442 0.97133 0.98232 0.92713 0.90319 0.91139 0.88712 0.91962 0.73980 0.92658 0.92131 0.92008 0.88299 0.94012 0.92452 0.91459 0.92747 0.88405 0.83682 0.87284 0.91892 0.86571 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.83 71.98 0.71 -0.26 16 2 C -0.14 -1.47 5.41 30.59 0.17 -1.31 16 3 C 0.09 0.92 3.77 29.84 0.11 1.03 16 4 H 0.15 0.18 7.99 -2.38 -0.02 0.16 16 5 F -0.20 -3.41 16.75 44.97 0.75 -2.65 16 6 C 0.48 8.27 7.17 87.65 0.63 8.90 16 7 O -0.57 -15.90 16.61 -3.06 -0.05 -15.95 16 8 N -0.70 -7.87 5.56 -463.08 -2.57 -10.44 16 9 C 0.12 1.93 5.60 86.38 0.48 2.41 16 10 C 0.05 0.64 5.07 86.30 0.44 1.08 16 11 N -0.55 -10.55 4.75 -927.06 -4.41 -14.96 16 12 C 0.02 0.37 8.97 127.69 1.15 1.52 16 13 C 0.12 2.31 5.12 85.56 0.44 2.75 16 14 C -0.15 -4.52 4.89 -19.83 -0.10 -4.62 16 15 C -0.05 -1.58 9.69 22.25 0.22 -1.36 16 16 C -0.21 -8.98 9.99 22.39 0.22 -8.75 16 17 C 0.11 5.66 6.65 22.58 0.15 5.81 16 18 O -0.24 -14.40 9.76 -22.78 -0.22 -14.62 16 19 C -0.41 -24.38 9.49 67.92 0.64 -23.74 16 20 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 21 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 22 N -0.92 -57.23 13.67 21.61 0.30 -56.93 16 23 Si 1.02 43.16 29.55 68.60 2.03 45.19 16 24 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 27 C -0.24 -10.55 9.17 22.39 0.21 -10.34 16 28 C -0.06 -1.93 7.89 22.25 0.18 -1.76 16 29 H 0.05 0.46 7.93 -2.39 -0.02 0.44 16 30 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.97 8.05 -2.38 -0.02 0.95 16 34 H 0.42 1.23 8.36 -92.71 -0.78 0.45 16 35 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.06 1.12 6.55 -2.39 -0.02 1.10 16 37 H 0.06 0.51 8.12 -2.39 -0.02 0.49 16 38 H 0.10 0.88 7.93 -2.38 -0.02 0.86 16 39 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 1.46 5.89 -2.39 -0.01 1.44 16 41 H 0.07 1.33 6.47 -2.38 -0.02 1.32 16 42 H 0.05 0.90 8.06 -2.39 -0.02 0.88 16 43 H 0.10 1.55 7.87 -2.39 -0.02 1.53 16 44 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 45 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 46 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 47 H 0.12 5.12 5.64 -2.91 -0.02 5.11 16 48 H 0.14 3.56 7.98 -2.91 -0.02 3.54 16 Total: -1.00 -81.40 399.37 2.12 -79.28 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.20 Total: 20.61 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 6.10 Total: -29.52 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -6.68 Total: -82.33 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.27 Total: -30.57 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.75 Total: -2.65 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -81.40 2.12 -79.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420292909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.960 kcal (2) G-P(sol) polarization free energy of solvation -81.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds