Wall clock time and date at job start Tue Mar 31 2020 20:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47332 * 2 1 4 4 H 1.09003 * 109.46643 * 305.00069 * 3 2 1 5 5 F 1.39897 * 109.46802 * 64.99808 * 3 2 1 6 6 C 1.50697 * 109.47280 * 185.00054 * 3 2 1 7 7 O 1.21284 * 119.99990 * 314.99830 * 6 3 2 8 8 N 1.34776 * 120.00106 * 134.99788 * 6 3 2 9 9 C 1.46498 * 120.00182 * 179.97438 * 8 6 3 10 10 H 1.08999 * 109.47022 * 325.00736 * 9 8 6 11 11 C 1.53005 * 109.46496 * 85.00275 * 9 8 6 12 12 C 1.52994 * 109.47616 * 205.00172 * 9 8 6 13 13 N 1.46897 * 109.46907 * 55.00011 * 12 9 8 14 14 C 1.46900 * 111.00002 * 180.02562 * 13 12 9 15 15 C 1.50702 * 109.47288 * 180.02562 * 14 13 12 16 16 C 1.38301 * 119.93176 * 269.73104 * 15 14 13 17 17 C 1.38098 * 120.06626 * 179.72642 * 16 15 14 18 18 C 1.38880 * 119.93568 * 0.56427 * 17 16 15 19 19 O 1.35745 * 120.07269 * 179.68924 * 18 17 16 20 20 C 1.34827 * 117.00179 * 174.48853 * 19 18 17 21 21 H 1.08001 * 119.99980 * 5.04523 * 20 19 18 22 22 C 1.38657 * 119.99973 * 185.05467 * 20 19 18 23 23 N 1.31561 * 119.99882 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00201 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47099 * 89.99858 * 24 22 20 26 26 H 1.48496 * 109.47040 * 210.00318 * 24 22 20 27 27 H 1.48506 * 109.46876 * 329.99942 * 24 22 20 28 28 C 1.38881 * 119.85794 * 359.70589 * 18 17 16 29 29 C 1.38101 * 119.93130 * 0.02562 * 28 18 17 30 30 H 1.09002 * 109.47076 * 59.99891 * 1 2 3 31 31 H 1.09004 * 109.47195 * 300.00162 * 1 2 3 32 32 H 1.08992 * 109.47325 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47534 * 119.99835 * 2 1 3 34 34 H 1.08994 * 109.47109 * 240.00008 * 2 1 3 35 35 H 0.97003 * 119.99956 * 0.02562 * 8 6 3 36 36 H 1.08992 * 109.47177 * 299.99773 * 11 9 8 37 37 H 1.08999 * 109.47108 * 60.00514 * 11 9 8 38 38 H 1.09004 * 109.46979 * 180.02562 * 11 9 8 39 39 H 1.08998 * 109.47732 * 175.00387 * 12 9 8 40 40 H 1.09005 * 109.47089 * 295.00667 * 12 9 8 41 41 H 1.00899 * 111.00617 * 303.95406 * 13 12 9 42 42 H 1.09005 * 109.47259 * 300.00152 * 14 13 12 43 43 H 1.08998 * 109.47269 * 60.00161 * 14 13 12 44 44 H 1.08002 * 119.96461 * 359.97118 * 16 15 14 45 45 H 1.08003 * 120.03324 * 180.26800 * 17 16 15 46 46 H 0.96993 * 120.00193 * 179.97438 * 23 22 20 47 47 H 1.07997 * 120.03635 * 179.97438 * 28 18 17 48 48 H 1.07995 * 119.96705 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 9 1.6699 2.0680 1.1954 6 6 3.5419 1.4443 -0.1238 7 8 4.2065 0.6811 0.5446 8 7 4.1467 2.2941 -0.9775 9 6 5.6068 2.2962 -1.0974 10 1 6.0516 2.0891 -0.1241 11 6 6.0380 1.2191 -2.0949 12 6 6.0760 3.6660 -1.5916 13 7 5.5602 4.7118 -0.6982 14 6 5.9912 6.0439 -1.1430 15 6 5.4447 7.0883 -0.2040 16 6 4.2120 7.6633 -0.4536 17 6 3.7060 8.6166 0.4081 18 6 4.4416 9.0061 1.5198 19 8 3.9498 9.9475 2.3651 20 6 4.6600 10.1968 3.4837 21 1 5.6159 9.7173 3.6345 22 6 4.1631 11.0685 4.4406 23 7 4.8559 11.3114 5.5323 24 14 2.5099 11.8982 4.1797 25 1 1.4343 11.0497 4.7527 26 1 2.5084 13.2215 4.8533 27 1 2.2728 12.0828 2.7253 28 6 5.6818 8.4308 1.7645 29 6 6.1798 7.4741 0.9022 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 3.6153 2.9048 -1.5118 36 1 5.7038 0.2432 -1.7428 37 1 5.5931 1.4262 -3.0682 38 1 7.1244 1.2203 -2.1839 39 1 7.1655 3.6970 -1.5963 40 1 5.7033 3.8350 -2.6019 41 1 4.5550 4.6627 -0.6263 42 1 7.0802 6.0916 -1.1449 43 1 5.6177 6.2291 -2.1501 44 1 3.6426 7.3637 -1.3211 45 1 2.7413 9.0622 0.2150 46 1 4.5085 11.9215 6.2015 47 1 6.2564 8.7319 2.6279 48 1 7.1439 7.0260 1.0922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001439234262.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:01 Heat of formation + Delta-G solvation = -97.517292 kcal Electronic energy + Delta-G solvation = -28596.212031 eV Core-core repulsion = 24372.872279 eV Total energy + Delta-G solvation = -4223.339752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.12509 -40.14273 -39.24298 -37.62074 -36.61809 -34.45193 -34.36399 -32.41117 -31.70420 -30.28802 -29.72963 -27.91474 -26.40899 -25.11541 -23.41731 -22.94273 -22.11181 -21.34970 -20.87273 -20.38059 -18.25641 -17.89827 -17.29432 -17.13331 -16.58594 -16.04200 -15.74992 -15.21093 -15.03219 -14.83818 -14.43807 -14.43351 -14.11308 -14.05458 -13.79898 -13.66549 -13.47716 -13.24501 -12.92552 -12.79438 -12.65667 -12.55289 -12.49890 -12.26757 -12.19235 -12.15296 -11.76467 -11.51035 -11.39093 -11.27090 -11.23135 -10.75921 -10.71537 -10.69937 -10.15631 -10.04594 -9.50420 -9.39312 -8.87815 -8.51935 -8.26975 -7.34638 -6.41987 -4.08685 2.10570 2.11637 2.15741 2.60175 3.21637 3.25670 3.39487 3.92693 4.04294 4.13199 4.23196 4.25765 4.47762 4.50906 4.59947 4.81035 4.84237 4.91742 4.95588 5.03974 5.10280 5.13967 5.23865 5.24987 5.28483 5.34791 5.38112 5.48555 5.62777 5.66839 5.68230 5.69747 5.79377 5.80164 5.83747 6.09150 6.12292 6.32059 6.54601 6.77199 6.85183 6.99276 7.02209 7.18313 7.30001 7.32634 7.60008 7.74339 7.79851 8.03131 8.93045 9.54901 10.65625 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.002399 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.265240 B =11668.665492 C =13282.851534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.083 3.917 4 H 0.098 0.902 5 F -0.185 7.185 6 C 0.496 3.504 7 O -0.517 6.517 8 N -0.716 5.716 9 C 0.141 3.859 10 H 0.099 0.901 11 C -0.162 4.162 12 C 0.050 3.950 13 N -0.683 5.683 14 C 0.117 3.883 15 C -0.180 4.180 16 C -0.071 4.071 17 C -0.193 4.193 18 C 0.162 3.838 19 O -0.217 6.217 20 C -0.390 4.390 21 H 0.107 0.893 22 C 0.063 3.937 23 N -0.879 5.879 24 Si 0.906 3.094 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.260 1.260 28 C -0.222 4.222 29 C -0.049 4.049 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.399 0.601 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.033 0.967 41 H 0.340 0.660 42 H 0.073 0.927 43 H 0.029 0.971 44 H 0.108 0.892 45 H 0.116 0.884 46 H 0.280 0.720 47 H 0.133 0.867 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 -20.406 -18.959 28.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C 0.043 3.957 4 H 0.116 0.884 5 F -0.166 7.166 6 C 0.280 3.720 7 O -0.391 6.391 8 N -0.368 5.368 9 C 0.037 3.963 10 H 0.117 0.883 11 C -0.221 4.221 12 C -0.080 4.080 13 N -0.315 5.315 14 C -0.010 4.010 15 C -0.181 4.181 16 C -0.090 4.090 17 C -0.213 4.213 18 C 0.110 3.890 19 O -0.121 6.121 20 C -0.465 4.465 21 H 0.124 0.876 22 C -0.140 4.140 23 N -0.516 5.516 24 Si 0.731 3.269 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.184 1.184 28 C -0.241 4.241 29 C -0.068 4.068 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.233 0.767 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.051 0.949 41 H 0.159 0.841 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.126 0.874 45 H 0.134 0.866 46 H 0.090 0.910 47 H 0.151 0.849 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.784 -20.735 -17.772 27.450 hybrid contribution -1.345 0.955 -0.824 1.844 sum -4.129 -19.780 -18.596 27.461 Atomic orbital electron populations 1.21781 0.94051 1.02659 1.02683 1.21992 0.97380 0.93541 1.04940 1.21624 0.91894 0.96277 0.85889 0.88432 1.92930 1.91929 1.83792 1.47930 1.20956 0.90366 0.80864 0.79844 1.90740 1.66040 1.39069 1.43297 1.46101 1.08219 1.39407 1.43091 1.21129 0.79357 0.94639 1.01224 0.88275 1.22150 1.01994 0.99126 0.98799 1.22290 1.01482 0.90251 0.93962 1.60507 1.17051 1.02825 1.51152 1.20649 0.99835 0.86123 0.94430 1.19151 0.97168 1.02244 0.99511 1.20449 0.94768 0.95988 0.97785 1.20152 1.01121 1.03296 0.96702 1.19141 0.91866 0.87853 0.90183 1.83565 1.48958 1.48869 1.30754 1.20780 1.03872 1.28142 0.93728 0.87577 1.24476 0.99239 0.96441 0.93851 1.69646 1.38488 1.35345 1.08151 0.86177 0.82585 0.78531 0.79579 1.19842 1.20775 1.18394 1.21297 0.97704 1.02045 1.03065 1.20634 0.98380 0.94939 0.92850 0.92342 0.91711 0.91706 0.89375 0.89958 0.76688 0.91856 0.92460 0.91189 0.89332 0.94902 0.84105 0.90868 0.95284 0.87416 0.86628 0.91021 0.84949 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.83 37.16 0.37 -0.55 16 2 C -0.14 -1.01 5.41 -26.73 -0.14 -1.16 16 3 C 0.08 0.69 3.77 -27.88 -0.11 0.59 16 4 H 0.10 0.49 8.00 -51.93 -0.42 0.07 16 5 F -0.19 -2.21 16.75 2.25 0.04 -2.18 16 6 C 0.50 5.15 7.13 -10.99 -0.08 5.08 16 7 O -0.52 -7.40 16.27 5.55 0.09 -7.31 16 8 N -0.72 -5.68 4.36 -53.81 -0.23 -5.91 16 9 C 0.14 1.19 2.88 -67.93 -0.20 0.99 16 10 H 0.10 1.13 7.58 -51.93 -0.39 0.74 16 11 C -0.16 -1.09 9.48 37.16 0.35 -0.74 16 12 C 0.05 0.40 5.30 -3.83 -0.02 0.38 16 13 N -0.68 -7.49 6.48 -115.06 -0.75 -8.24 16 14 C 0.12 1.39 5.81 -4.98 -0.03 1.36 16 15 C -0.18 -2.83 5.40 -104.57 -0.56 -3.39 16 16 C -0.07 -1.14 9.69 -39.61 -0.38 -1.52 16 17 C -0.19 -3.75 9.99 -39.40 -0.39 -4.14 16 18 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 19 O -0.22 -5.73 8.59 0.07 0.00 -5.73 16 20 C -0.39 -11.04 9.95 30.89 0.31 -10.74 16 21 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 22 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 23 N -0.88 -25.54 13.96 55.48 0.77 -24.76 16 24 Si 0.91 21.74 28.62 -169.99 -4.86 16.87 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 28 C -0.22 -4.80 9.17 -39.39 -0.36 -5.16 16 29 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.45 7.94 -51.93 -0.41 0.04 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.78 8.05 -51.93 -0.42 0.37 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.40 2.15 8.04 -40.82 -0.33 1.82 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.34 3.68 7.57 -39.29 -0.30 3.38 16 42 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 43 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 44 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.12 2.09 8.06 -52.48 -0.42 1.67 16 46 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.13 3.04 5.64 -52.49 -0.30 2.74 16 48 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 404.02 15.07 6.09 6.09 Total: -1.00 -32.75 404.02 -8.31 -41.06 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.47 Total: 5.23 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.99 Total: -15.12 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: -0.21 Total: -38.91 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.86 Total: 16.87 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.75 -8.31 -41.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001439234262.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.457 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds