Wall clock time and date at job start Tue Mar 31 2020 20:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47332 * 2 1 4 4 H 1.09003 * 109.46643 * 305.00069 * 3 2 1 5 5 F 1.39897 * 109.46802 * 64.99808 * 3 2 1 6 6 C 1.50697 * 109.47280 * 185.00054 * 3 2 1 7 7 O 1.21284 * 119.99990 * 314.99830 * 6 3 2 8 8 N 1.34776 * 120.00106 * 134.99788 * 6 3 2 9 9 C 1.46498 * 120.00182 * 179.97438 * 8 6 3 10 10 H 1.08999 * 109.47022 * 325.00736 * 9 8 6 11 11 C 1.53005 * 109.46496 * 85.00275 * 9 8 6 12 12 C 1.52994 * 109.47616 * 205.00172 * 9 8 6 13 13 N 1.46897 * 109.46907 * 55.00011 * 12 9 8 14 14 C 1.46900 * 111.00002 * 180.02562 * 13 12 9 15 15 C 1.50702 * 109.47288 * 180.02562 * 14 13 12 16 16 C 1.38301 * 119.93176 * 269.73104 * 15 14 13 17 17 C 1.38098 * 120.06626 * 179.72642 * 16 15 14 18 18 C 1.38880 * 119.93568 * 0.56427 * 17 16 15 19 19 O 1.35745 * 120.07269 * 179.68924 * 18 17 16 20 20 C 1.34827 * 117.00179 * 174.48853 * 19 18 17 21 21 H 1.08001 * 119.99980 * 5.04523 * 20 19 18 22 22 C 1.38657 * 119.99973 * 185.05467 * 20 19 18 23 23 N 1.31561 * 119.99882 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00201 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47099 * 89.99858 * 24 22 20 26 26 H 1.48496 * 109.47040 * 210.00318 * 24 22 20 27 27 H 1.48506 * 109.46876 * 329.99942 * 24 22 20 28 28 C 1.38881 * 119.85794 * 359.70589 * 18 17 16 29 29 C 1.38101 * 119.93130 * 0.02562 * 28 18 17 30 30 H 1.09002 * 109.47076 * 59.99891 * 1 2 3 31 31 H 1.09004 * 109.47195 * 300.00162 * 1 2 3 32 32 H 1.08992 * 109.47325 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47534 * 119.99835 * 2 1 3 34 34 H 1.08994 * 109.47109 * 240.00008 * 2 1 3 35 35 H 0.97003 * 119.99956 * 0.02562 * 8 6 3 36 36 H 1.08992 * 109.47177 * 299.99773 * 11 9 8 37 37 H 1.08999 * 109.47108 * 60.00514 * 11 9 8 38 38 H 1.09004 * 109.46979 * 180.02562 * 11 9 8 39 39 H 1.08998 * 109.47732 * 175.00387 * 12 9 8 40 40 H 1.09005 * 109.47089 * 295.00667 * 12 9 8 41 41 H 1.00899 * 111.00617 * 303.95406 * 13 12 9 42 42 H 1.09005 * 109.47259 * 300.00152 * 14 13 12 43 43 H 1.08998 * 109.47269 * 60.00161 * 14 13 12 44 44 H 1.08002 * 119.96461 * 359.97118 * 16 15 14 45 45 H 1.08003 * 120.03324 * 180.26800 * 17 16 15 46 46 H 0.96993 * 120.00193 * 179.97438 * 23 22 20 47 47 H 1.07997 * 120.03635 * 179.97438 * 28 18 17 48 48 H 1.07995 * 119.96705 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 9 1.6699 2.0680 1.1954 6 6 3.5419 1.4443 -0.1238 7 8 4.2065 0.6811 0.5446 8 7 4.1467 2.2941 -0.9775 9 6 5.6068 2.2962 -1.0974 10 1 6.0516 2.0891 -0.1241 11 6 6.0380 1.2191 -2.0949 12 6 6.0760 3.6660 -1.5916 13 7 5.5602 4.7118 -0.6982 14 6 5.9912 6.0439 -1.1430 15 6 5.4447 7.0883 -0.2040 16 6 4.2120 7.6633 -0.4536 17 6 3.7060 8.6166 0.4081 18 6 4.4416 9.0061 1.5198 19 8 3.9498 9.9475 2.3651 20 6 4.6600 10.1968 3.4837 21 1 5.6159 9.7173 3.6345 22 6 4.1631 11.0685 4.4406 23 7 4.8559 11.3114 5.5323 24 14 2.5099 11.8982 4.1797 25 1 1.4343 11.0497 4.7527 26 1 2.5084 13.2215 4.8533 27 1 2.2728 12.0828 2.7253 28 6 5.6818 8.4308 1.7645 29 6 6.1798 7.4741 0.9022 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 3.6153 2.9048 -1.5118 36 1 5.7038 0.2432 -1.7428 37 1 5.5931 1.4262 -3.0682 38 1 7.1244 1.2203 -2.1839 39 1 7.1655 3.6970 -1.5963 40 1 5.7033 3.8350 -2.6019 41 1 4.5550 4.6627 -0.6263 42 1 7.0802 6.0916 -1.1449 43 1 5.6177 6.2291 -2.1501 44 1 3.6426 7.3637 -1.3211 45 1 2.7413 9.0622 0.2150 46 1 4.5085 11.9215 6.2015 47 1 6.2564 8.7319 2.6279 48 1 7.1439 7.0260 1.0922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001439234262.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:00 Heat of formation + Delta-G solvation = -120.089144 kcal Electronic energy + Delta-G solvation = -28597.190820 eV Core-core repulsion = 24372.872279 eV Total energy + Delta-G solvation = -4224.318541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.92934 -40.98253 -40.83385 -38.88044 -37.77310 -35.43205 -34.96383 -34.43363 -32.52204 -31.81372 -30.96852 -28.50529 -27.80956 -26.57885 -24.46884 -23.69767 -23.55657 -22.08209 -21.76383 -21.61423 -19.80861 -19.12332 -18.96464 -17.87926 -17.31315 -17.01773 -16.69801 -16.44717 -15.98563 -15.90945 -15.75497 -15.72683 -15.54928 -15.18884 -15.08285 -14.71612 -14.47875 -14.32943 -14.09723 -14.00010 -13.90846 -13.61241 -13.28599 -13.25057 -13.08631 -12.88530 -12.85484 -12.76600 -12.41639 -12.38056 -12.23447 -12.03372 -11.93610 -11.84911 -11.76564 -11.27671 -10.91039 -10.85076 -10.23583 -9.79003 -9.32613 -8.96877 -8.50814 -6.23719 0.58662 0.63133 1.30501 1.32055 1.35322 1.51387 1.92979 2.27458 2.72436 2.99834 3.15031 3.34024 3.43675 3.55803 3.70703 3.87303 3.91062 4.02820 4.07485 4.17106 4.23700 4.33719 4.40271 4.49671 4.50862 4.59607 4.66013 4.72307 4.72991 4.77301 4.79200 4.89124 4.99672 5.01371 5.05836 5.14415 5.26605 5.27335 5.33728 5.39260 5.43132 5.56917 5.76362 5.82631 5.91625 6.09188 6.27430 6.34479 6.46562 6.83371 7.04725 7.57932 8.61105 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.002399 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.265240 B =11668.665492 C =13282.851534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C 0.078 3.922 4 H 0.141 0.859 5 F -0.208 7.208 6 C 0.491 3.509 7 O -0.567 6.567 8 N -0.701 5.701 9 C 0.142 3.858 10 H 0.062 0.938 11 C -0.154 4.154 12 C 0.058 3.942 13 N -0.703 5.703 14 C 0.122 3.878 15 C -0.151 4.151 16 C -0.059 4.059 17 C -0.192 4.192 18 C 0.118 3.882 19 O -0.245 6.245 20 C -0.400 4.400 21 H 0.077 0.923 22 C 0.007 3.993 23 N -0.925 5.925 24 Si 0.974 3.026 25 H -0.266 1.266 26 H -0.267 1.267 27 H -0.260 1.260 28 C -0.242 4.242 29 C -0.058 4.058 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.415 0.585 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.342 0.658 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.160 0.840 45 H 0.130 0.870 46 H 0.285 0.715 47 H 0.102 0.898 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.131 -21.633 -23.714 32.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C 0.039 3.961 4 H 0.159 0.841 5 F -0.189 7.189 6 C 0.275 3.725 7 O -0.445 6.445 8 N -0.353 5.353 9 C 0.037 3.963 10 H 0.080 0.920 11 C -0.213 4.213 12 C -0.071 4.071 13 N -0.336 5.336 14 C -0.006 4.006 15 C -0.152 4.152 16 C -0.077 4.077 17 C -0.211 4.211 18 C 0.069 3.931 19 O -0.153 6.153 20 C -0.476 4.476 21 H 0.095 0.905 22 C -0.191 4.191 23 N -0.566 5.566 24 Si 0.796 3.204 25 H -0.191 1.191 26 H -0.191 1.191 27 H -0.185 1.185 28 C -0.262 4.262 29 C -0.077 4.077 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.253 0.747 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.161 0.839 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.177 0.823 45 H 0.148 0.852 46 H 0.094 0.906 47 H 0.119 0.881 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.297 -21.974 -22.596 31.810 hybrid contribution -0.712 1.040 0.371 1.314 sum -5.009 -20.934 -22.225 30.939 Atomic orbital electron populations 1.21774 0.92855 1.03347 1.02880 1.21988 0.98312 0.92864 1.04512 1.21954 0.90639 0.97374 0.86111 0.84100 1.92880 1.92014 1.84284 1.49757 1.21391 0.91224 0.80434 0.79435 1.90721 1.67239 1.41193 1.45341 1.46014 1.08291 1.38705 1.42324 1.21076 0.79367 0.95867 0.99997 0.91973 1.22072 1.02775 0.97375 0.99031 1.22280 1.01794 0.88381 0.94620 1.60384 1.17372 1.02970 1.52857 1.20645 1.00302 0.85148 0.94479 1.19727 0.96156 1.01250 0.98080 1.20999 0.94787 0.93795 0.98141 1.20542 1.01406 1.03583 0.95595 1.19737 0.93165 0.88845 0.91369 1.83503 1.49363 1.51495 1.30918 1.20692 1.03384 1.28382 0.95146 0.90498 1.25332 1.03059 0.97177 0.93502 1.69738 1.40519 1.37022 1.09341 0.85174 0.77907 0.78011 0.79338 1.19134 1.19141 1.18456 1.21282 0.97762 1.03754 1.03360 1.20902 0.99517 0.94085 0.93158 0.90402 0.93175 0.90857 0.91983 0.88295 0.74738 0.93723 0.90281 0.90215 0.88801 0.91808 0.83915 0.90143 0.92012 0.82271 0.85249 0.90571 0.88050 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.83 71.98 0.71 -0.81 16 2 C -0.14 -1.84 5.41 30.60 0.17 -1.67 16 3 C 0.08 1.17 3.77 29.85 0.11 1.28 16 4 H 0.14 0.84 8.00 -2.39 -0.02 0.82 16 5 F -0.21 -4.84 16.75 44.97 0.75 -4.09 16 6 C 0.49 9.60 7.13 87.66 0.63 10.22 16 7 O -0.57 -16.55 16.27 -3.04 -0.05 -16.59 16 8 N -0.70 -9.13 4.36 -442.54 -1.93 -11.05 16 9 C 0.14 2.03 2.88 44.99 0.13 2.16 16 10 H 0.06 1.39 7.58 -2.39 -0.02 1.37 16 11 C -0.15 -1.65 9.48 71.98 0.68 -0.96 16 12 C 0.06 0.66 5.30 86.30 0.46 1.12 16 13 N -0.70 -12.31 6.48 -517.94 -3.36 -15.67 16 14 C 0.12 2.23 5.81 85.56 0.50 2.72 16 15 C -0.15 -4.18 5.40 -19.83 -0.11 -4.29 16 16 C -0.06 -1.62 9.69 22.25 0.22 -1.41 16 17 C -0.19 -7.08 9.99 22.39 0.22 -6.86 16 18 C 0.12 5.57 6.65 22.58 0.15 5.72 16 19 O -0.25 -13.54 8.59 -22.65 -0.19 -13.74 16 20 C -0.40 -24.17 9.95 67.92 0.68 -23.49 16 21 H 0.08 4.92 5.44 -2.91 -0.02 4.90 16 22 C 0.01 0.43 5.49 84.83 0.47 0.90 16 23 N -0.93 -56.57 13.96 21.61 0.30 -56.26 16 24 Si 0.97 46.12 28.62 68.60 1.96 48.09 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 27 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 28 C -0.24 -10.96 9.17 22.39 0.21 -10.76 16 29 C -0.06 -2.04 9.69 22.25 0.22 -1.83 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.65 7.94 -2.39 -0.02 0.63 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 1.14 8.05 -2.39 -0.02 1.12 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.42 2.60 8.04 -92.71 -0.75 1.86 16 36 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 41 H 0.34 5.76 7.57 -89.69 -0.68 5.08 16 42 H 0.08 1.43 8.08 -2.38 -0.02 1.41 16 43 H 0.06 0.81 8.08 -2.39 -0.02 0.79 16 44 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 45 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 46 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 47 H 0.10 5.14 5.64 -2.91 -0.02 5.12 16 48 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -79.15 404.02 2.47 -76.68 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -0.45 Total: 20.60 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 5.42 Total: -27.96 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -4.98 Total: -82.99 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.24 Total: -30.33 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.75 Total: -4.09 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.96 Total: 48.09 kcal Total: -79.15 2.47 -76.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001439234262.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.407 kcal (2) G-P(sol) polarization free energy of solvation -79.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds