Wall clock time and date at job start Tue Mar 31 2020 20:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47098 * 2 1 4 4 H 1.09001 * 109.46920 * 55.00082 * 3 2 1 5 5 F 1.39896 * 109.47171 * 294.99985 * 3 2 1 6 6 C 1.50698 * 109.47083 * 174.99879 * 3 2 1 7 7 O 1.21286 * 120.00116 * 45.00115 * 6 3 2 8 8 N 1.34779 * 120.00095 * 224.99797 * 6 3 2 9 9 C 1.46496 * 120.00026 * 180.02562 * 8 6 3 10 10 H 1.09006 * 109.47263 * 325.00316 * 9 8 6 11 11 C 1.53000 * 109.47344 * 85.00082 * 9 8 6 12 12 C 1.53000 * 109.47513 * 205.00344 * 9 8 6 13 13 N 1.46902 * 109.46995 * 54.99568 * 12 9 8 14 14 C 1.46897 * 110.99896 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.47168 * 180.02562 * 14 13 12 16 16 C 1.38299 * 119.93217 * 269.73195 * 15 14 13 17 17 C 1.38093 * 120.06953 * 179.72477 * 16 15 14 18 18 C 1.38883 * 119.92808 * 0.56550 * 17 16 15 19 19 O 1.35754 * 120.06438 * 179.68623 * 18 17 16 20 20 C 1.34826 * 116.99724 * 174.49160 * 19 18 17 21 21 H 1.07998 * 120.00100 * 5.04739 * 20 19 18 22 22 C 1.38654 * 119.99970 * 185.05457 * 20 19 18 23 23 N 1.31557 * 120.00012 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99959 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47263 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47148 * 119.99951 * 24 22 20 27 27 H 1.48504 * 109.47096 * 239.99883 * 24 22 20 28 28 C 1.38871 * 119.86468 * 359.70509 * 18 17 16 29 29 C 1.38101 * 119.93230 * 0.02562 * 28 18 17 30 30 H 1.09000 * 109.47347 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47011 * 299.99903 * 1 2 3 32 32 H 1.09002 * 109.47668 * 59.99707 * 1 2 3 33 33 H 1.09000 * 109.47530 * 240.00181 * 2 1 3 34 34 H 1.08997 * 109.47598 * 119.99806 * 2 1 3 35 35 H 0.96994 * 119.99888 * 0.02562 * 8 6 3 36 36 H 1.08997 * 109.47942 * 180.02562 * 11 9 8 37 37 H 1.09006 * 109.47149 * 300.00473 * 11 9 8 38 38 H 1.09006 * 109.46749 * 59.99920 * 11 9 8 39 39 H 1.09004 * 109.46650 * 294.99920 * 12 9 8 40 40 H 1.09000 * 109.47310 * 175.00397 * 12 9 8 41 41 H 1.00895 * 111.00199 * 303.96329 * 13 12 9 42 42 H 1.09002 * 109.46852 * 60.00232 * 14 13 12 43 43 H 1.09001 * 109.47162 * 300.00674 * 14 13 12 44 44 H 1.08005 * 119.96050 * 359.97425 * 16 15 14 45 45 H 1.07999 * 120.03730 * 180.26989 * 17 16 15 46 46 H 0.97002 * 120.00021 * 179.97438 * 23 22 20 47 47 H 1.08002 * 120.03853 * 179.97438 * 28 18 17 48 48 H 1.07997 * 119.96732 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 9 1.6698 2.0680 -1.1954 6 6 3.5418 1.4443 0.1239 7 8 4.2064 0.6811 -0.5446 8 7 4.1466 2.2942 0.9774 9 6 5.6066 2.2963 1.0974 10 1 5.9825 1.2800 0.9786 11 6 6.2063 3.1920 0.0116 12 6 6.0044 2.8292 2.4753 13 7 5.3322 2.0420 3.5176 14 6 5.6909 2.5268 4.8571 15 6 4.9844 1.6966 5.8976 16 6 3.7350 2.0772 6.3525 17 6 3.0826 1.3155 7.3018 18 6 3.6875 0.1725 7.8083 19 8 3.0514 -0.5748 8.7463 20 6 3.6417 -1.7306 9.1115 21 1 4.6168 -1.9852 8.7233 22 6 2.9968 -2.5925 9.9854 23 7 1.8091 -2.2823 10.4586 24 14 3.8144 -4.1943 10.4909 25 1 5.1370 -4.3066 9.8251 26 1 3.9993 -4.2123 11.9642 27 1 2.9570 -5.3371 10.0856 28 6 4.9445 -0.2040 7.3537 29 6 5.5894 0.5589 6.4001 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.6151 2.9043 1.5123 36 1 7.2927 3.1932 0.1005 37 1 5.9229 2.8123 -0.9701 38 1 5.8305 4.2082 0.1304 39 1 5.7066 3.8743 2.5605 40 1 7.0844 2.7481 2.5984 41 1 4.3317 2.0484 3.3869 42 1 5.3905 3.5697 4.9585 43 1 6.7687 2.4439 4.9969 44 1 3.2674 2.9690 5.9619 45 1 2.1051 1.6109 7.6534 46 1 1.3578 -2.8855 11.0696 47 1 5.4177 -1.0921 7.7460 48 1 6.5672 0.2668 6.0464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001439234311.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:06 Heat of formation + Delta-G solvation = -100.583973 kcal Electronic energy + Delta-G solvation = -28608.574166 eV Core-core repulsion = 24385.101433 eV Total energy + Delta-G solvation = -4223.472734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.18486 -40.11706 -39.12186 -37.54553 -36.51862 -34.41513 -34.26646 -32.35032 -31.63448 -30.22452 -29.58312 -27.84488 -26.26140 -25.25259 -23.46809 -22.88670 -22.01108 -21.28569 -20.85603 -20.43930 -18.23183 -18.02401 -17.29000 -16.96411 -16.37191 -15.96249 -15.89136 -15.11779 -14.96806 -14.66163 -14.49500 -14.36377 -14.34274 -14.11098 -13.64890 -13.56027 -13.44373 -13.26161 -12.86156 -12.71954 -12.70873 -12.59844 -12.40564 -12.26869 -12.08898 -11.85545 -11.62250 -11.38471 -11.35583 -11.25302 -11.19326 -10.83166 -10.69519 -10.57763 -10.44393 -10.02744 -9.47820 -9.36446 -8.87490 -8.50718 -8.21834 -7.23408 -6.48611 -4.07318 2.14015 2.16992 2.23450 2.62033 3.10276 3.12431 3.17825 3.93693 3.96348 4.09224 4.19511 4.29212 4.54586 4.58311 4.63428 4.83853 4.98170 5.04251 5.06056 5.13059 5.17961 5.21523 5.29329 5.32718 5.35113 5.39435 5.40548 5.67317 5.68765 5.71519 5.75388 5.77661 5.83385 5.87748 5.92579 6.11718 6.16835 6.38116 6.64895 6.84516 6.89373 7.01853 7.04606 7.14367 7.30133 7.37284 7.41452 7.76497 7.78299 7.96719 8.97390 9.66685 10.69394 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010847 B = 0.002379 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.695129 B =11765.472164 C =13235.597373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.142 4.142 3 C 0.083 3.917 4 H 0.100 0.900 5 F -0.192 7.192 6 C 0.497 3.503 7 O -0.518 6.518 8 N -0.716 5.716 9 C 0.142 3.858 10 H 0.099 0.901 11 C -0.163 4.163 12 C 0.050 3.950 13 N -0.683 5.683 14 C 0.119 3.881 15 C -0.188 4.188 16 C -0.069 4.069 17 C -0.194 4.194 18 C 0.156 3.844 19 O -0.178 6.178 20 C -0.391 4.391 21 H 0.093 0.907 22 C 0.039 3.961 23 N -0.862 5.862 24 Si 0.941 3.059 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.275 1.275 28 C -0.235 4.235 29 C -0.047 4.047 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.399 0.601 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.033 0.967 40 H 0.088 0.912 41 H 0.339 0.661 42 H 0.028 0.972 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.116 0.884 46 H 0.270 0.730 47 H 0.126 0.874 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 11.214 -18.430 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.180 4.180 3 C 0.043 3.957 4 H 0.118 0.882 5 F -0.173 7.173 6 C 0.281 3.719 7 O -0.392 6.392 8 N -0.368 5.368 9 C 0.037 3.963 10 H 0.117 0.883 11 C -0.222 4.222 12 C -0.080 4.080 13 N -0.315 5.315 14 C -0.009 4.009 15 C -0.189 4.189 16 C -0.088 4.088 17 C -0.213 4.213 18 C 0.102 3.898 19 O -0.081 6.081 20 C -0.468 4.468 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.497 5.497 24 Si 0.765 3.235 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.254 4.254 29 C -0.066 4.066 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.233 0.767 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.106 0.894 41 H 0.158 0.842 42 H 0.046 0.954 43 H 0.090 0.910 44 H 0.124 0.876 45 H 0.134 0.866 46 H 0.080 0.920 47 H 0.144 0.856 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.039 10.100 -18.652 21.592 hybrid contribution -0.339 0.387 0.577 0.774 sum 3.700 10.488 -18.075 21.222 Atomic orbital electron populations 1.21775 0.94027 1.02880 1.02442 1.21999 0.97416 0.93260 1.05298 1.21657 0.91907 0.96655 0.85471 0.88179 1.92875 1.92070 1.83929 1.48387 1.20938 0.90302 0.80521 0.80185 1.90737 1.66095 1.38931 1.43474 1.46103 1.08228 1.39379 1.43090 1.21120 0.79083 1.01886 0.94184 0.88284 1.22155 1.01282 0.99520 0.99198 1.22296 1.00784 0.94817 0.90140 1.60531 1.13639 1.55669 1.01666 1.20631 0.99461 0.94671 0.86164 1.19082 0.97122 0.99746 1.02985 1.20451 0.94042 0.97937 0.96366 1.20160 1.01385 0.97110 1.02694 1.19400 0.90929 0.91311 0.88126 1.83974 1.45914 1.31089 1.47091 1.21386 1.02916 0.94541 1.27916 0.88966 1.25295 0.95801 0.99168 0.96235 1.70046 1.12959 1.36841 1.29873 0.85649 0.79008 0.80139 0.78663 1.19048 1.20133 1.20091 1.21178 0.97004 1.03677 1.03585 1.20577 0.98242 0.93206 0.94603 0.91543 0.92133 0.92093 0.89525 0.89341 0.76653 0.91216 0.91835 0.92441 0.94884 0.89371 0.84211 0.95351 0.91013 0.87590 0.86635 0.92039 0.85583 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.83 37.15 0.37 -0.79 16 2 C -0.14 -1.25 5.41 -26.73 -0.14 -1.40 16 3 C 0.08 0.72 3.77 -27.88 -0.11 0.61 16 4 H 0.10 0.58 7.99 -51.93 -0.42 0.16 16 5 F -0.19 -2.01 16.75 2.25 0.04 -1.97 16 6 C 0.50 5.29 7.13 -10.99 -0.08 5.21 16 7 O -0.52 -7.50 16.27 5.55 0.09 -7.41 16 8 N -0.72 -5.89 4.36 -53.81 -0.23 -6.13 16 9 C 0.14 1.23 2.88 -67.93 -0.20 1.03 16 10 H 0.10 1.11 7.58 -51.93 -0.39 0.72 16 11 C -0.16 -1.23 9.48 37.16 0.35 -0.87 16 12 C 0.05 0.40 5.30 -3.82 -0.02 0.38 16 13 N -0.68 -7.34 6.48 -115.05 -0.75 -8.08 16 14 C 0.12 1.41 5.81 -4.98 -0.03 1.38 16 15 C -0.19 -2.97 5.40 -104.57 -0.56 -3.54 16 16 C -0.07 -1.14 9.69 -39.61 -0.38 -1.52 16 17 C -0.19 -3.92 9.99 -39.40 -0.39 -4.31 16 18 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 19 O -0.18 -4.99 9.76 0.05 0.00 -4.99 16 20 C -0.39 -10.81 9.49 30.89 0.29 -10.52 16 21 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -25.02 13.67 55.48 0.76 -24.26 16 24 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 26 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 28 C -0.24 -5.01 9.17 -39.40 -0.36 -5.37 16 29 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.45 7.94 -51.93 -0.41 0.04 16 33 H 0.09 0.86 8.05 -51.93 -0.42 0.45 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.40 2.30 8.05 -40.82 -0.33 1.97 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.34 3.52 7.57 -39.29 -0.30 3.23 16 42 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 43 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 44 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 45 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 46 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 48 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 405.14 15.07 6.11 6.11 Total: -1.00 -32.58 405.14 -8.48 -41.05 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.46 Total: 6.88 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -2.01 Total: -16.53 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.22 Total: -38.47 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.58 -8.48 -41.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001439234311.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.531 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds