Wall clock time and date at job start Tue Mar 31 2020 20:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47098 * 2 1 4 4 H 1.09001 * 109.46920 * 55.00082 * 3 2 1 5 5 F 1.39896 * 109.47171 * 294.99985 * 3 2 1 6 6 C 1.50698 * 109.47083 * 174.99879 * 3 2 1 7 7 O 1.21286 * 120.00116 * 45.00115 * 6 3 2 8 8 N 1.34779 * 120.00095 * 224.99797 * 6 3 2 9 9 C 1.46496 * 120.00026 * 180.02562 * 8 6 3 10 10 H 1.09006 * 109.47263 * 325.00316 * 9 8 6 11 11 C 1.53000 * 109.47344 * 85.00082 * 9 8 6 12 12 C 1.53000 * 109.47513 * 205.00344 * 9 8 6 13 13 N 1.46902 * 109.46995 * 54.99568 * 12 9 8 14 14 C 1.46897 * 110.99896 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.47168 * 180.02562 * 14 13 12 16 16 C 1.38299 * 119.93217 * 269.73195 * 15 14 13 17 17 C 1.38093 * 120.06953 * 179.72477 * 16 15 14 18 18 C 1.38883 * 119.92808 * 0.56550 * 17 16 15 19 19 O 1.35754 * 120.06438 * 179.68623 * 18 17 16 20 20 C 1.34826 * 116.99724 * 174.49160 * 19 18 17 21 21 H 1.07998 * 120.00100 * 5.04739 * 20 19 18 22 22 C 1.38654 * 119.99970 * 185.05457 * 20 19 18 23 23 N 1.31557 * 120.00012 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99959 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47263 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47148 * 119.99951 * 24 22 20 27 27 H 1.48504 * 109.47096 * 239.99883 * 24 22 20 28 28 C 1.38871 * 119.86468 * 359.70509 * 18 17 16 29 29 C 1.38101 * 119.93230 * 0.02562 * 28 18 17 30 30 H 1.09000 * 109.47347 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47011 * 299.99903 * 1 2 3 32 32 H 1.09002 * 109.47668 * 59.99707 * 1 2 3 33 33 H 1.09000 * 109.47530 * 240.00181 * 2 1 3 34 34 H 1.08997 * 109.47598 * 119.99806 * 2 1 3 35 35 H 0.96994 * 119.99888 * 0.02562 * 8 6 3 36 36 H 1.08997 * 109.47942 * 180.02562 * 11 9 8 37 37 H 1.09006 * 109.47149 * 300.00473 * 11 9 8 38 38 H 1.09006 * 109.46749 * 59.99920 * 11 9 8 39 39 H 1.09004 * 109.46650 * 294.99920 * 12 9 8 40 40 H 1.09000 * 109.47310 * 175.00397 * 12 9 8 41 41 H 1.00895 * 111.00199 * 303.96329 * 13 12 9 42 42 H 1.09002 * 109.46852 * 60.00232 * 14 13 12 43 43 H 1.09001 * 109.47162 * 300.00674 * 14 13 12 44 44 H 1.08005 * 119.96050 * 359.97425 * 16 15 14 45 45 H 1.07999 * 120.03730 * 180.26989 * 17 16 15 46 46 H 0.97002 * 120.00021 * 179.97438 * 23 22 20 47 47 H 1.08002 * 120.03853 * 179.97438 * 28 18 17 48 48 H 1.07997 * 119.96732 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 9 1.6698 2.0680 -1.1954 6 6 3.5418 1.4443 0.1239 7 8 4.2064 0.6811 -0.5446 8 7 4.1466 2.2942 0.9774 9 6 5.6066 2.2963 1.0974 10 1 5.9825 1.2800 0.9786 11 6 6.2063 3.1920 0.0116 12 6 6.0044 2.8292 2.4753 13 7 5.3322 2.0420 3.5176 14 6 5.6909 2.5268 4.8571 15 6 4.9844 1.6966 5.8976 16 6 3.7350 2.0772 6.3525 17 6 3.0826 1.3155 7.3018 18 6 3.6875 0.1725 7.8083 19 8 3.0514 -0.5748 8.7463 20 6 3.6417 -1.7306 9.1115 21 1 4.6168 -1.9852 8.7233 22 6 2.9968 -2.5925 9.9854 23 7 1.8091 -2.2823 10.4586 24 14 3.8144 -4.1943 10.4909 25 1 5.1370 -4.3066 9.8251 26 1 3.9993 -4.2123 11.9642 27 1 2.9570 -5.3371 10.0856 28 6 4.9445 -0.2040 7.3537 29 6 5.5894 0.5589 6.4001 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.6151 2.9043 1.5123 36 1 7.2927 3.1932 0.1005 37 1 5.9229 2.8123 -0.9701 38 1 5.8305 4.2082 0.1304 39 1 5.7066 3.8743 2.5605 40 1 7.0844 2.7481 2.5984 41 1 4.3317 2.0484 3.3869 42 1 5.3905 3.5697 4.9585 43 1 6.7687 2.4439 4.9969 44 1 3.2674 2.9690 5.9619 45 1 2.1051 1.6109 7.6534 46 1 1.3578 -2.8855 11.0696 47 1 5.4177 -1.0921 7.7460 48 1 6.5672 0.2668 6.0464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001439234311.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:05 Heat of formation + Delta-G solvation = -122.788638 kcal Electronic energy + Delta-G solvation = -28609.537033 eV Core-core repulsion = 24385.101433 eV Total energy + Delta-G solvation = -4224.435600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.94774 -40.95342 -40.73369 -38.77888 -37.73212 -35.41490 -34.97562 -34.24881 -32.48661 -31.76081 -30.83814 -28.51233 -27.69995 -26.70685 -24.50740 -23.63650 -23.54141 -22.09095 -21.78941 -21.62733 -19.81981 -19.01641 -18.79540 -18.01336 -17.14529 -16.91914 -16.64483 -16.41343 -16.17103 -15.92008 -15.71596 -15.64612 -15.47904 -15.17255 -14.89290 -14.79557 -14.62065 -14.28702 -14.02054 -13.94900 -13.60183 -13.47596 -13.29438 -13.22845 -13.04110 -12.92060 -12.83467 -12.74355 -12.36825 -12.32662 -12.12538 -12.08097 -12.04623 -11.86530 -11.77157 -11.15317 -10.86277 -10.79727 -10.23854 -9.74449 -9.30762 -8.87651 -8.47309 -6.14878 0.63674 0.70562 1.32079 1.34931 1.42639 1.52689 1.91015 2.17489 2.79076 3.09573 3.34309 3.42727 3.54792 3.55522 3.66768 3.88321 3.90504 4.06345 4.10973 4.20739 4.25730 4.33130 4.39216 4.49308 4.53399 4.63043 4.66887 4.70707 4.72527 4.78762 4.80344 4.88227 5.02231 5.05551 5.11613 5.12611 5.17961 5.25412 5.31480 5.33533 5.42590 5.59688 5.74921 5.84675 6.04243 6.09527 6.28170 6.33526 6.48797 6.98189 7.03521 7.79510 8.76144 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010847 B = 0.002379 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.695129 B =11765.472164 C =13235.597373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.142 4.142 3 C 0.084 3.916 4 H 0.138 0.862 5 F -0.202 7.202 6 C 0.492 3.508 7 O -0.565 6.565 8 N -0.701 5.701 9 C 0.143 3.857 10 H 0.069 0.931 11 C -0.156 4.156 12 C 0.059 3.941 13 N -0.699 5.699 14 C 0.123 3.877 15 C -0.158 4.158 16 C -0.057 4.057 17 C -0.204 4.204 18 C 0.113 3.887 19 O -0.233 6.233 20 C -0.411 4.411 21 H 0.099 0.901 22 C -0.022 4.022 23 N -0.920 5.920 24 Si 1.016 2.984 25 H -0.253 1.253 26 H -0.268 1.268 27 H -0.268 1.268 28 C -0.247 4.247 29 C -0.052 4.052 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.415 0.585 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.342 0.658 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.153 0.847 45 H 0.113 0.887 46 H 0.272 0.728 47 H 0.112 0.888 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 13.663 -19.859 24.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.181 4.181 3 C 0.045 3.955 4 H 0.156 0.844 5 F -0.183 7.183 6 C 0.276 3.724 7 O -0.444 6.444 8 N -0.354 5.354 9 C 0.038 3.962 10 H 0.087 0.913 11 C -0.215 4.215 12 C -0.071 4.071 13 N -0.331 5.331 14 C -0.005 4.005 15 C -0.159 4.159 16 C -0.075 4.075 17 C -0.224 4.224 18 C 0.063 3.937 19 O -0.140 6.140 20 C -0.488 4.488 21 H 0.116 0.884 22 C -0.220 4.220 23 N -0.559 5.559 24 Si 0.836 3.164 25 H -0.177 1.177 26 H -0.193 1.193 27 H -0.193 1.193 28 C -0.266 4.266 29 C -0.071 4.071 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.252 0.748 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.161 0.839 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.170 0.830 45 H 0.131 0.869 46 H 0.081 0.919 47 H 0.130 0.870 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.548 12.623 -20.107 24.380 hybrid contribution -0.667 -0.082 0.741 1.001 sum 4.881 12.541 -19.365 23.582 Atomic orbital electron populations 1.21763 0.92825 1.03227 1.02991 1.21983 0.98409 0.93439 1.04247 1.21811 0.90704 0.96887 0.86129 0.84442 1.92854 1.92033 1.84053 1.49339 1.21336 0.91085 0.80106 0.79842 1.90719 1.67220 1.40955 1.45461 1.46027 1.08393 1.38710 1.42273 1.21072 0.79129 1.00642 0.95325 0.91314 1.22089 1.02159 0.99859 0.97385 1.22269 1.00955 0.95569 0.88259 1.60410 1.14139 1.56906 1.01658 1.20620 0.99557 0.95012 0.85276 1.19658 0.96280 0.98212 1.01792 1.20919 0.93916 0.98391 0.94286 1.20468 1.01758 0.96626 1.03520 1.19981 0.92264 0.92479 0.89016 1.83934 1.47768 1.32224 1.50092 1.21816 1.03422 0.95159 1.28362 0.88371 1.26537 0.96446 1.02924 0.96044 1.70180 1.15096 1.38790 1.31812 0.84564 0.78344 0.75028 0.78506 1.17671 1.19252 1.19341 1.21248 0.96639 1.04035 1.04721 1.20911 0.99197 0.93437 0.93531 0.91394 0.90940 0.92103 0.91437 0.89631 0.74798 0.89903 0.94162 0.90727 0.92259 0.88609 0.83907 0.92578 0.89966 0.82961 0.86878 0.91854 0.87013 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.83 71.98 0.71 -1.36 16 2 C -0.14 -2.43 5.41 30.59 0.17 -2.27 16 3 C 0.08 1.31 3.77 29.85 0.11 1.43 16 4 H 0.14 1.11 7.99 -2.39 -0.02 1.09 16 5 F -0.20 -3.97 16.75 44.97 0.75 -3.21 16 6 C 0.49 9.88 7.13 87.66 0.63 10.50 16 7 O -0.57 -16.58 16.27 -3.05 -0.05 -16.63 16 8 N -0.70 -9.62 4.36 -442.53 -1.93 -11.55 16 9 C 0.14 2.09 2.88 44.99 0.13 2.22 16 10 H 0.07 1.47 7.58 -2.38 -0.02 1.45 16 11 C -0.16 -1.95 9.48 71.98 0.68 -1.26 16 12 C 0.06 0.66 5.30 86.30 0.46 1.12 16 13 N -0.70 -11.62 6.48 -517.92 -3.36 -14.98 16 14 C 0.12 2.22 5.81 85.56 0.50 2.72 16 15 C -0.16 -4.35 5.40 -19.83 -0.11 -4.46 16 16 C -0.06 -1.65 9.69 22.25 0.22 -1.44 16 17 C -0.20 -8.17 9.99 22.39 0.22 -7.95 16 18 C 0.11 5.50 6.65 22.58 0.15 5.65 16 19 O -0.23 -13.97 9.76 -22.74 -0.22 -14.19 16 20 C -0.41 -24.01 9.49 67.92 0.64 -23.36 16 21 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 22 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 23 N -0.92 -56.35 13.67 21.61 0.30 -56.05 16 24 Si 1.02 43.05 29.55 68.60 2.03 45.07 16 25 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 26 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 28 C -0.25 -10.67 9.17 22.39 0.21 -10.46 16 29 C -0.05 -1.74 9.69 22.25 0.22 -1.53 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.83 7.94 -2.39 -0.02 0.82 16 33 H 0.07 1.40 8.05 -2.39 -0.02 1.38 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.41 3.04 8.05 -92.71 -0.75 2.30 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 37 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 40 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.34 5.40 7.57 -89.70 -0.68 4.72 16 42 H 0.06 0.78 8.08 -2.39 -0.02 0.76 16 43 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 44 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 45 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 46 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 47 H 0.11 5.03 5.64 -2.91 -0.02 5.01 16 48 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -78.25 405.14 2.47 -75.79 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.45 Total: 26.99 kcal Atomic # 6 Polarization: -36.63 SS G_CDS: 5.39 Total: -31.24 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -4.99 Total: -82.58 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.27 Total: -30.82 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.75 Total: -3.21 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -78.25 2.47 -75.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001439234311.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.000 kcal (2) G-P(sol) polarization free energy of solvation -78.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds