Wall clock time and date at job start Tue Mar 31 2020 20:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00441 * 2 1 4 4 N 1.46901 * 109.47184 * 124.99646 * 3 2 1 5 5 C 1.48672 * 111.11318 * 290.31825 * 4 3 2 6 6 C 1.54381 * 104.67299 * 201.09659 * 5 4 3 7 7 C 1.54259 * 105.06129 * 23.77216 * 6 5 4 8 8 C 1.48561 * 111.00228 * 174.89857 * 4 3 2 9 9 H 1.08998 * 110.41178 * 40.14395 * 8 4 3 10 10 C 1.53011 * 110.40800 * 277.82413 * 8 4 3 11 11 H 1.08995 * 109.70206 * 62.94230 * 10 8 4 12 12 C 1.53622 * 109.65820 * 183.53195 * 10 8 4 13 13 C 1.53047 * 109.23759 * 174.54694 * 12 10 8 14 14 C 1.53031 * 109.53785 * 298.51168 * 13 12 10 15 15 C 1.53187 * 109.31440 * 61.36545 * 14 13 12 16 16 N 1.46923 * 108.77590 * 305.36274 * 15 14 13 17 17 C 1.34775 * 120.63427 * 233.58416 * 16 15 14 18 18 O 1.21277 * 120.00633 * 174.28859 * 17 16 15 19 19 C 1.50701 * 119.99986 * 354.29239 * 17 16 15 20 20 S 1.80998 * 109.47341 * 179.97438 * 19 17 16 21 21 C 1.76205 * 100.00070 * 180.02562 * 20 19 17 22 22 H 1.08007 * 119.99866 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99988 * 180.02562 * 21 20 19 24 24 N 1.31628 * 119.99879 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99745 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47208 * 269.99554 * 25 23 21 27 27 H 1.48501 * 109.47538 * 30.00081 * 25 23 21 28 28 H 1.48502 * 109.47014 * 150.00012 * 25 23 21 29 29 H 1.07998 * 119.99780 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00250 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00160 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46857 * 5.00185 * 3 2 1 33 33 H 1.08995 * 109.47624 * 245.00479 * 3 2 1 34 34 H 1.09000 * 110.44250 * 82.25491 * 5 4 3 35 35 H 1.09004 * 110.40138 * 319.91531 * 5 4 3 36 36 H 1.09000 * 110.31975 * 264.87489 * 6 5 4 37 37 H 1.09000 * 110.41045 * 142.70868 * 6 5 4 38 38 H 1.09003 * 110.32502 * 241.10893 * 7 6 5 39 39 H 1.08999 * 110.32431 * 118.89660 * 7 6 5 40 40 H 1.08998 * 109.63790 * 54.56163 * 12 10 8 41 41 H 1.08999 * 109.46543 * 294.43023 * 12 10 8 42 42 H 1.09003 * 109.45592 * 178.49212 * 13 12 10 43 43 H 1.08996 * 109.44483 * 58.52766 * 13 12 10 44 44 H 1.09005 * 109.50125 * 301.41241 * 14 13 12 45 45 H 1.09006 * 109.52483 * 181.33294 * 14 13 12 46 46 H 1.09003 * 109.58989 * 185.57540 * 15 14 13 47 47 H 1.08996 * 109.70560 * 65.22214 * 15 14 13 48 48 H 1.09003 * 109.46928 * 59.99485 * 19 17 16 49 49 H 1.09003 * 109.47481 * 300.00108 * 19 17 16 50 50 H 0.96996 * 120.00215 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9963 1.3319 1.1346 5 6 2.2664 1.4352 2.4256 6 6 3.3087 1.9885 3.4210 7 6 4.3468 2.7226 2.5475 8 6 3.8445 2.5510 1.0978 9 1 3.2541 3.4158 0.7952 10 6 5.0243 2.3516 0.1442 11 1 4.6554 2.2008 -0.8703 12 6 5.9371 3.5866 0.1861 13 6 7.1817 3.3228 -0.6645 14 6 7.9535 2.1340 -0.0874 15 6 7.0664 0.8859 -0.1285 16 7 5.8044 1.1796 0.5641 17 6 5.3678 0.3858 1.5620 18 8 4.3803 0.6945 2.1947 19 6 6.1067 -0.8856 1.8916 20 16 5.2816 -1.7237 3.2674 21 6 6.3247 -3.1337 3.4367 22 1 7.1748 -3.2582 2.7821 23 6 6.0534 -4.0848 4.4104 24 7 5.0171 -3.9333 5.2077 25 14 7.1589 -5.5799 4.5893 26 1 6.6501 -6.6776 3.7282 27 1 8.5406 -5.2263 4.1759 28 1 7.1646 -6.0245 6.0062 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 1.9186 0.4531 2.7460 35 1 1.4262 2.1236 2.3331 36 1 3.7822 1.1720 3.9662 37 1 2.8387 2.6846 4.1158 38 1 5.3299 2.2664 2.6638 39 1 4.3851 3.7792 2.8123 40 1 6.2355 3.7868 1.2151 41 1 5.4008 4.4483 -0.2114 42 1 7.8193 4.2069 -0.6590 43 1 6.8810 3.0983 -1.6878 44 1 8.2329 2.3479 0.9443 45 1 8.8524 1.9612 -0.6793 46 1 7.5737 0.0603 0.3707 47 1 6.8604 0.6153 -1.1641 48 1 7.1321 -0.6471 2.1742 49 1 6.1131 -1.5389 1.0190 50 1 4.4429 -3.1571 5.1146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480375202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:59 Heat of formation + Delta-G solvation = 83.381115 kcal Electronic energy + Delta-G solvation = -29779.717862 eV Core-core repulsion = 26130.435629 eV Total energy + Delta-G solvation = -3649.282233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16613 -37.95299 -36.90636 -34.46752 -32.68882 -32.46333 -32.09729 -30.63079 -28.87371 -27.58384 -25.33527 -24.88451 -24.66780 -23.06246 -21.33381 -20.49079 -20.27669 -19.54068 -18.53638 -17.97287 -17.21256 -16.04144 -15.71535 -15.49590 -14.89916 -14.79457 -14.56384 -14.25011 -14.17855 -13.81839 -13.61210 -13.44069 -13.22639 -13.04033 -12.82000 -12.52576 -12.24845 -12.08261 -11.93279 -11.70297 -11.69054 -11.20475 -11.09197 -11.03229 -10.89325 -10.81905 -10.71727 -10.56642 -10.43357 -10.37024 -10.16988 -9.93000 -9.45915 -9.24922 -8.95418 -8.74638 -8.19501 -8.11716 -7.26601 -6.56693 -6.55420 -3.91558 2.41110 3.04700 3.34207 3.37480 3.41308 3.56196 3.66241 4.24606 4.30334 4.61387 4.70389 4.79200 4.91351 4.97848 5.08604 5.15859 5.19891 5.24605 5.27082 5.27837 5.39624 5.42031 5.46972 5.57188 5.60308 5.62379 5.68499 5.70846 5.78085 5.80443 5.88149 5.90945 5.93415 5.95969 6.04629 6.05829 6.09754 6.20273 6.23403 6.35470 6.42439 6.61302 6.76795 6.80811 6.92944 6.95022 7.30762 7.52378 7.90501 7.98980 8.56251 9.09211 9.33006 10.87605 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010733 B = 0.004482 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.160422 B = 6245.560854 C = 7731.226866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.123 4.123 3 C 0.041 3.959 4 N -0.432 5.432 5 C 0.066 3.934 6 C -0.093 4.093 7 C -0.077 4.077 8 C 0.071 3.929 9 H 0.044 0.956 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.131 4.131 13 C -0.116 4.116 14 C -0.135 4.135 15 C 0.112 3.888 16 N -0.610 5.610 17 C 0.489 3.511 18 O -0.421 6.421 19 C -0.119 4.119 20 S -0.115 6.115 21 C -0.605 4.605 22 H 0.062 0.938 23 C 0.036 3.964 24 N -0.887 5.887 25 Si 1.084 2.916 26 H -0.285 1.285 27 H -0.288 1.288 28 H -0.281 1.281 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.019 0.981 36 H 0.090 0.910 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.060 0.940 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 16.142 -12.977 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.142 4.142 3 C -0.086 4.086 4 N -0.161 5.161 5 C -0.061 4.061 6 C -0.131 4.131 7 C -0.115 4.115 8 C -0.038 4.038 9 H 0.062 0.938 10 C 0.063 3.937 11 H 0.081 0.919 12 C -0.170 4.170 13 C -0.153 4.153 14 C -0.174 4.174 15 C -0.012 4.012 16 N -0.349 5.349 17 C 0.277 3.723 18 O -0.290 6.290 19 C -0.270 4.270 20 S 0.111 5.889 21 C -0.753 4.753 22 H 0.080 0.920 23 C -0.175 4.175 24 N -0.522 5.522 25 Si 0.910 3.090 26 H -0.212 1.212 27 H -0.214 1.214 28 H -0.206 1.206 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.037 0.963 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.078 0.922 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.777 14.701 -11.157 18.472 hybrid contribution 0.670 1.528 -2.013 2.614 sum -0.107 16.229 -13.170 20.901 Atomic orbital electron populations 1.23727 0.95927 1.01263 1.03639 1.22863 0.95342 0.98814 0.97157 1.21758 0.95151 0.94321 0.97343 1.67087 1.15140 1.33668 1.00184 1.22774 0.93598 1.00048 0.89703 1.22051 0.95431 0.99026 0.96585 1.22328 1.00579 0.95850 0.92728 1.22646 0.93568 0.91338 0.96242 0.93790 1.21034 0.90469 0.85105 0.97063 0.91948 1.22051 0.96405 0.97227 1.01275 1.21469 0.96609 0.98145 0.99101 1.21924 0.98177 0.95362 1.01900 1.21598 0.84736 0.97510 0.97318 1.47643 1.22678 1.27723 1.36815 1.20108 0.86280 0.84456 0.81430 1.90992 1.22026 1.70230 1.45725 1.23282 1.02461 0.97353 1.03896 1.84543 1.40368 1.25260 1.38686 1.23745 1.16561 1.09773 1.25208 0.91968 1.25965 0.98409 1.01215 0.91875 1.70764 1.14182 1.30618 1.36618 0.83333 0.74514 0.74375 0.76745 1.21162 1.21388 1.20602 0.89347 0.88619 0.86922 0.95565 0.91117 0.90338 0.96253 0.89142 0.94431 0.91076 0.95611 0.91010 0.91436 0.91946 0.92051 0.91452 0.91111 0.89696 0.92202 0.90376 0.90227 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.61 14.32 29.02 0.42 -2.19 16 2 C -0.12 -1.74 9.26 -36.03 -0.33 -2.07 16 3 C 0.04 0.55 5.20 -4.98 -0.03 0.53 16 4 N -0.43 -6.52 2.33 -223.47 -0.52 -7.04 16 5 C 0.07 1.05 5.24 -2.12 -0.01 1.03 16 6 C -0.09 -1.48 6.04 -25.35 -0.15 -1.64 16 7 C -0.08 -1.11 4.48 -25.35 -0.11 -1.22 16 8 C 0.07 0.93 2.06 -66.07 -0.14 0.80 16 9 H 0.04 0.54 7.99 -51.93 -0.42 0.13 16 10 C 0.17 1.98 2.78 -67.37 -0.19 1.80 16 11 H 0.06 0.73 7.41 -51.93 -0.38 0.35 16 12 C -0.13 -1.25 5.26 -26.38 -0.14 -1.39 16 13 C -0.12 -0.97 5.88 -26.69 -0.16 -1.12 16 14 C -0.14 -1.25 6.08 -26.62 -0.16 -1.41 16 15 C 0.11 1.26 6.32 -3.72 -0.02 1.24 16 16 N -0.61 -8.29 2.76 -164.97 -0.46 -8.74 16 17 C 0.49 8.48 6.11 -10.99 -0.07 8.41 16 18 O -0.42 -7.62 4.02 5.56 0.02 -7.60 16 19 C -0.12 -2.39 4.57 36.01 0.16 -2.22 16 20 S -0.12 -2.98 19.60 -107.50 -2.11 -5.09 16 21 C -0.60 -17.37 9.50 30.94 0.29 -17.07 16 22 H 0.06 1.74 7.80 -52.48 -0.41 1.33 16 23 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 24 N -0.89 -27.45 13.67 55.49 0.76 -26.69 16 25 Si 1.08 25.19 29.92 -169.99 -5.09 20.10 16 26 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.09 1.01 7.84 -52.49 -0.41 0.60 16 30 H 0.10 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.03 0.34 7.54 -51.93 -0.39 -0.05 16 33 H 0.07 0.91 7.32 -51.93 -0.38 0.53 16 34 H 0.08 1.42 8.13 -51.93 -0.42 1.00 16 35 H 0.02 0.28 7.83 -51.93 -0.41 -0.12 16 36 H 0.09 1.73 6.98 -51.93 -0.36 1.37 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 1.16 5.46 -51.93 -0.28 0.87 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.77 7.07 -51.93 -0.37 0.40 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.08 1.03 5.96 -51.93 -0.31 0.72 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 1.52 7.45 -51.91 -0.39 1.14 16 49 H 0.08 1.59 8.12 -51.92 -0.42 1.17 16 50 H 0.28 8.73 7.12 -40.82 -0.29 8.44 16 LS Contribution 383.51 15.07 5.78 5.78 Total: -1.00 -31.01 383.51 -11.01 -42.02 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.67 Total: 2.86 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -0.73 Total: -15.60 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -0.22 Total: -42.47 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.02 Total: -7.60 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.09 Total: 20.10 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -2.11 Total: -5.09 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.01 -11.01 -42.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480375202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.399 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds