Wall clock time and date at job start Tue Mar 31 2020 20:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00441 * 2 1 4 4 N 1.46901 * 109.47184 * 124.99646 * 3 2 1 5 5 C 1.48672 * 111.11318 * 290.31825 * 4 3 2 6 6 C 1.54381 * 104.67299 * 201.09659 * 5 4 3 7 7 C 1.54259 * 105.06129 * 23.77216 * 6 5 4 8 8 C 1.48561 * 111.00228 * 174.89857 * 4 3 2 9 9 H 1.08998 * 110.41178 * 40.14395 * 8 4 3 10 10 C 1.53011 * 110.40800 * 277.82413 * 8 4 3 11 11 H 1.08995 * 109.70206 * 62.94230 * 10 8 4 12 12 C 1.53622 * 109.65820 * 183.53195 * 10 8 4 13 13 C 1.53047 * 109.23759 * 174.54694 * 12 10 8 14 14 C 1.53031 * 109.53785 * 298.51168 * 13 12 10 15 15 C 1.53187 * 109.31440 * 61.36545 * 14 13 12 16 16 N 1.46923 * 108.77590 * 305.36274 * 15 14 13 17 17 C 1.34775 * 120.63427 * 233.58416 * 16 15 14 18 18 O 1.21277 * 120.00633 * 174.28859 * 17 16 15 19 19 C 1.50701 * 119.99986 * 354.29239 * 17 16 15 20 20 S 1.80998 * 109.47341 * 179.97438 * 19 17 16 21 21 C 1.76205 * 100.00070 * 180.02562 * 20 19 17 22 22 H 1.08007 * 119.99866 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99988 * 180.02562 * 21 20 19 24 24 N 1.31628 * 119.99879 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99745 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47208 * 269.99554 * 25 23 21 27 27 H 1.48501 * 109.47538 * 30.00081 * 25 23 21 28 28 H 1.48502 * 109.47014 * 150.00012 * 25 23 21 29 29 H 1.07998 * 119.99780 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00250 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00160 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46857 * 5.00185 * 3 2 1 33 33 H 1.08995 * 109.47624 * 245.00479 * 3 2 1 34 34 H 1.09000 * 110.44250 * 82.25491 * 5 4 3 35 35 H 1.09004 * 110.40138 * 319.91531 * 5 4 3 36 36 H 1.09000 * 110.31975 * 264.87489 * 6 5 4 37 37 H 1.09000 * 110.41045 * 142.70868 * 6 5 4 38 38 H 1.09003 * 110.32502 * 241.10893 * 7 6 5 39 39 H 1.08999 * 110.32431 * 118.89660 * 7 6 5 40 40 H 1.08998 * 109.63790 * 54.56163 * 12 10 8 41 41 H 1.08999 * 109.46543 * 294.43023 * 12 10 8 42 42 H 1.09003 * 109.45592 * 178.49212 * 13 12 10 43 43 H 1.08996 * 109.44483 * 58.52766 * 13 12 10 44 44 H 1.09005 * 109.50125 * 301.41241 * 14 13 12 45 45 H 1.09006 * 109.52483 * 181.33294 * 14 13 12 46 46 H 1.09003 * 109.58989 * 185.57540 * 15 14 13 47 47 H 1.08996 * 109.70560 * 65.22214 * 15 14 13 48 48 H 1.09003 * 109.46928 * 59.99485 * 19 17 16 49 49 H 1.09003 * 109.47481 * 300.00108 * 19 17 16 50 50 H 0.96996 * 120.00215 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9963 1.3319 1.1346 5 6 2.2664 1.4352 2.4256 6 6 3.3087 1.9885 3.4210 7 6 4.3468 2.7226 2.5475 8 6 3.8445 2.5510 1.0978 9 1 3.2541 3.4158 0.7952 10 6 5.0243 2.3516 0.1442 11 1 4.6554 2.2008 -0.8703 12 6 5.9371 3.5866 0.1861 13 6 7.1817 3.3228 -0.6645 14 6 7.9535 2.1340 -0.0874 15 6 7.0664 0.8859 -0.1285 16 7 5.8044 1.1796 0.5641 17 6 5.3678 0.3858 1.5620 18 8 4.3803 0.6945 2.1947 19 6 6.1067 -0.8856 1.8916 20 16 5.2816 -1.7237 3.2674 21 6 6.3247 -3.1337 3.4367 22 1 7.1748 -3.2582 2.7821 23 6 6.0534 -4.0848 4.4104 24 7 5.0171 -3.9333 5.2077 25 14 7.1589 -5.5799 4.5893 26 1 6.6501 -6.6776 3.7282 27 1 8.5406 -5.2263 4.1759 28 1 7.1646 -6.0245 6.0062 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 1.9186 0.4531 2.7460 35 1 1.4262 2.1236 2.3331 36 1 3.7822 1.1720 3.9662 37 1 2.8387 2.6846 4.1158 38 1 5.3299 2.2664 2.6638 39 1 4.3851 3.7792 2.8123 40 1 6.2355 3.7868 1.2151 41 1 5.4008 4.4483 -0.2114 42 1 7.8193 4.2069 -0.6590 43 1 6.8810 3.0983 -1.6878 44 1 8.2329 2.3479 0.9443 45 1 8.8524 1.9612 -0.6793 46 1 7.5737 0.0603 0.3707 47 1 6.8604 0.6153 -1.1641 48 1 7.1321 -0.6471 2.1742 49 1 6.1131 -1.5389 1.0190 50 1 4.4429 -3.1571 5.1146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480375202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:58 Heat of formation + Delta-G solvation = 67.285523 kcal Electronic energy + Delta-G solvation = -29780.415819 eV Core-core repulsion = 26130.435629 eV Total energy + Delta-G solvation = -3649.980190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.32080 -39.02026 -38.05734 -35.57091 -34.71300 -33.68179 -33.09858 -31.77439 -30.35684 -28.65651 -27.05433 -26.38245 -25.77778 -23.99896 -22.45904 -21.67272 -21.26149 -20.65070 -20.38130 -19.38617 -18.36212 -17.32668 -16.95630 -16.65082 -16.22341 -16.00167 -15.90789 -15.71012 -15.32167 -15.22237 -14.75417 -14.59701 -14.44758 -14.28346 -14.13648 -13.98982 -13.66947 -13.60757 -13.07149 -12.96777 -12.77753 -12.72179 -12.25494 -12.03994 -12.01683 -11.96350 -11.92161 -11.64318 -11.57494 -11.54508 -11.44287 -11.34994 -11.11915 -11.07673 -10.31861 -10.21761 -9.99270 -9.32171 -8.89297 -8.73362 -8.41692 -6.19429 1.34103 1.36038 1.52730 1.59059 1.77731 2.00571 2.33257 2.36615 3.04677 3.17475 3.19378 3.65969 3.80879 3.90415 3.97787 4.04179 4.05454 4.13673 4.24035 4.26015 4.31430 4.32714 4.34529 4.38560 4.47666 4.49401 4.62160 4.67179 4.73582 4.74450 4.79396 4.86571 4.97162 4.99905 5.05763 5.10194 5.14450 5.17545 5.22987 5.25738 5.38128 5.51344 5.55295 5.66213 5.70349 5.78705 5.88874 6.17611 6.19505 6.43827 6.68386 7.09509 7.78022 8.54582 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010733 B = 0.004482 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.160422 B = 6245.560854 C = 7731.226866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.147 4.147 3 C 0.049 3.951 4 N -0.453 5.453 5 C 0.075 3.925 6 C -0.092 4.092 7 C -0.069 4.069 8 C 0.073 3.927 9 H 0.065 0.935 10 C 0.167 3.833 11 H 0.074 0.926 12 C -0.125 4.125 13 C -0.111 4.111 14 C -0.129 4.129 15 C 0.106 3.894 16 N -0.603 5.603 17 C 0.483 3.517 18 O -0.431 6.431 19 C -0.097 4.097 20 S -0.171 6.171 21 C -0.617 4.617 22 H 0.063 0.937 23 C -0.016 4.016 24 N -0.914 5.914 25 Si 1.134 2.866 26 H -0.269 1.269 27 H -0.266 1.266 28 H -0.277 1.277 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.036 0.964 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 18.132 -15.411 23.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.165 4.165 3 C -0.077 4.077 4 N -0.182 5.182 5 C -0.053 4.053 6 C -0.130 4.130 7 C -0.107 4.107 8 C -0.035 4.035 9 H 0.083 0.917 10 C 0.064 3.936 11 H 0.092 0.908 12 C -0.163 4.163 13 C -0.149 4.149 14 C -0.168 4.168 15 C -0.017 4.017 16 N -0.341 5.341 17 C 0.270 3.730 18 O -0.301 6.301 19 C -0.248 4.248 20 S 0.056 5.944 21 C -0.765 4.765 22 H 0.081 0.919 23 C -0.220 4.220 24 N -0.549 5.549 25 Si 0.952 3.048 26 H -0.195 1.195 27 H -0.191 1.191 28 H -0.203 1.203 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.096 0.904 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.114 16.731 -13.632 21.582 hybrid contribution 0.353 0.973 -1.320 1.677 sum 0.467 17.704 -14.952 23.178 Atomic orbital electron populations 1.23896 0.95375 1.02358 1.01270 1.22797 0.96001 0.98317 0.99425 1.21690 0.95106 0.94079 0.96871 1.66889 1.15879 1.35275 1.00139 1.22576 0.94025 0.98353 0.90350 1.21949 0.95986 0.98117 0.96909 1.22189 0.98746 0.96290 0.93466 1.22694 0.93941 0.91192 0.95676 0.91730 1.21236 0.90278 0.85188 0.96896 0.90817 1.22024 0.96668 0.96536 1.01114 1.21463 0.96021 0.98169 0.99200 1.21886 0.98575 0.94670 1.01639 1.21796 0.83976 0.98410 0.97536 1.47563 1.23430 1.27523 1.35538 1.19694 0.86206 0.84223 0.82920 1.91043 1.22295 1.70356 1.46384 1.23185 1.02263 0.98529 1.00861 1.84670 1.41744 1.25639 1.42301 1.24094 1.16674 1.10614 1.25071 0.91893 1.27663 0.98849 1.04243 0.91207 1.70884 1.15443 1.30455 1.38147 0.82742 0.73684 0.71168 0.77170 1.19474 1.19073 1.20262 0.87482 0.88215 0.89712 0.94206 0.90224 0.93909 0.94632 0.93384 0.93042 0.93307 0.93632 0.92231 0.89185 0.90294 0.90857 0.92851 0.89117 0.91150 0.90620 0.89987 0.90359 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.61 14.32 67.78 0.97 -3.64 16 2 C -0.15 -4.15 9.26 25.65 0.24 -3.91 16 3 C 0.05 1.25 5.20 85.56 0.45 1.70 16 4 N -0.45 -13.46 2.33 -860.91 -2.01 -15.47 16 5 C 0.07 2.40 5.24 86.43 0.45 2.86 16 6 C -0.09 -3.01 6.04 31.49 0.19 -2.82 16 7 C -0.07 -1.94 4.48 31.49 0.14 -1.80 16 8 C 0.07 1.79 2.06 45.07 0.09 1.88 16 9 H 0.06 1.35 7.99 -2.39 -0.02 1.33 16 10 C 0.17 3.53 2.78 45.12 0.13 3.66 16 11 H 0.07 1.46 7.41 -2.39 -0.02 1.44 16 12 C -0.12 -1.95 5.26 30.82 0.16 -1.79 16 13 C -0.11 -1.42 5.88 30.62 0.18 -1.24 16 14 C -0.13 -2.05 6.08 30.67 0.19 -1.86 16 15 C 0.11 2.21 6.32 86.36 0.55 2.75 16 16 N -0.60 -15.73 2.76 -794.24 -2.19 -17.92 16 17 C 0.48 17.08 6.11 87.66 0.54 17.61 16 18 O -0.43 -16.19 4.02 -3.02 -0.01 -16.20 16 19 C -0.10 -4.02 4.57 71.24 0.33 -3.70 16 20 S -0.17 -9.31 19.60 -56.49 -1.11 -10.41 16 21 C -0.62 -36.45 9.50 67.95 0.65 -35.80 16 22 H 0.06 3.59 7.80 -2.91 -0.02 3.56 16 23 C -0.02 -0.96 5.49 84.86 0.47 -0.49 16 24 N -0.91 -58.49 13.67 21.65 0.30 -58.19 16 25 Si 1.13 50.76 29.92 68.60 2.05 52.81 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 27 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 28 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 29 H 0.11 2.19 7.84 -2.91 -0.02 2.17 16 30 H 0.10 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.08 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.04 0.92 7.54 -2.39 -0.02 0.90 16 33 H 0.08 1.87 7.32 -2.39 -0.02 1.85 16 34 H 0.04 1.65 8.13 -2.39 -0.02 1.64 16 35 H 0.04 1.01 7.83 -2.38 -0.02 0.99 16 36 H 0.05 1.98 6.98 -2.39 -0.02 1.97 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 1.59 5.46 -2.39 -0.01 1.58 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.11 7.07 -2.39 -0.02 1.09 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.07 1.66 5.96 -2.39 -0.01 1.65 16 47 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.08 3.30 7.45 -2.39 -0.02 3.28 16 49 H 0.08 3.23 8.12 -2.39 -0.02 3.21 16 50 H 0.26 17.32 7.12 -92.71 -0.66 16.66 16 Total: -1.00 -70.96 383.51 3.73 -67.22 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 1.00 Total: 24.77 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 5.70 Total: -26.59 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -3.91 Total: -91.59 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.01 Total: -16.20 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.05 Total: 52.81 kcal Atomic # 16 Polarization: -9.31 SS G_CDS: -1.11 Total: -10.41 kcal Total: -70.96 3.73 -67.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480375202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.509 kcal (2) G-P(sol) polarization free energy of solvation -70.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds