Wall clock time and date at job start Tue Mar 31 2020 20:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47295 * 2 1 4 4 H 1.09007 * 109.46880 * 305.74381 * 3 2 1 5 5 O 1.42900 * 109.47059 * 65.73743 * 3 2 1 6 6 C 1.35959 * 116.99851 * 263.70589 * 5 3 2 7 7 C 1.38664 * 120.06504 * 356.10264 * 6 5 3 8 8 C 1.38181 * 119.96545 * 179.72203 * 7 6 5 9 9 C 1.38253 * 120.09943 * 0.55138 * 8 7 6 10 10 C 1.38255 * 120.12863 * 359.72336 * 9 8 7 11 11 C 1.38334 * 120.02663 * 359.97438 * 10 9 8 12 12 F 1.35099 * 120.04897 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47314 * 185.73586 * 3 2 1 14 14 O 1.21279 * 120.00344 * 252.33893 * 13 3 2 15 15 N 1.34774 * 119.99749 * 72.33805 * 13 3 2 16 16 C 1.46503 * 120.00142 * 5.50825 * 15 13 3 17 17 C 1.46497 * 120.00433 * 185.50684 * 15 13 3 18 18 C 1.53002 * 109.47012 * 89.99539 * 17 15 13 19 19 N 1.46507 * 109.47192 * 180.02562 * 18 17 15 20 20 C 1.46499 * 119.99884 * 270.00457 * 19 18 17 21 21 C 1.36934 * 119.99722 * 90.00404 * 19 18 17 22 22 H 1.07997 * 120.00167 * 25.85016 * 21 19 18 23 23 C 1.38818 * 119.99865 * 205.85506 * 21 19 18 24 24 N 1.31612 * 119.99907 * 9.12711 * 23 21 19 25 25 Si 1.86796 * 120.00066 * 189.13137 * 23 21 19 26 26 H 1.48504 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47430 * 119.99426 * 25 23 21 28 28 H 1.48501 * 109.47095 * 239.99987 * 25 23 21 29 29 H 1.09004 * 109.47130 * 300.00124 * 1 2 3 30 30 H 1.09000 * 109.46963 * 59.99836 * 1 2 3 31 31 H 1.08998 * 109.47241 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46765 * 119.99650 * 2 1 3 33 33 H 1.08995 * 109.47122 * 240.00040 * 2 1 3 34 34 H 1.08003 * 120.01317 * 359.97093 * 7 6 5 35 35 H 1.08004 * 119.94595 * 180.27541 * 8 7 6 36 36 H 1.08004 * 119.93905 * 179.74354 * 9 8 7 37 37 H 1.08000 * 119.99107 * 179.97438 * 10 9 8 38 38 H 1.09007 * 109.47209 * 91.85642 * 16 15 13 39 39 H 1.08998 * 109.47305 * 211.85658 * 16 15 13 40 40 H 1.08999 * 109.47163 * 331.85832 * 16 15 13 41 41 H 1.08990 * 109.47722 * 210.00111 * 17 15 13 42 42 H 1.09006 * 109.46739 * 330.00366 * 17 15 13 43 43 H 1.08999 * 109.47621 * 300.00719 * 18 17 15 44 44 H 1.09000 * 109.46815 * 60.01179 * 18 17 15 45 45 H 1.09000 * 109.46889 * 93.88397 * 20 19 18 46 46 H 1.08995 * 109.46889 * 213.87884 * 20 19 18 47 47 H 1.09002 * 109.47463 * 333.88390 * 20 19 18 48 48 H 0.97006 * 120.00168 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5951 1.9852 -0.8342 5 8 1.6769 2.0762 1.2283 6 6 0.5439 2.8278 1.2236 7 6 -0.1581 3.0189 0.0432 8 6 -1.3125 3.7784 0.0420 9 6 -1.7625 4.3577 1.2138 10 6 -1.0626 4.1745 2.3919 11 6 0.0903 3.4100 2.4005 12 9 0.7743 3.2303 3.5515 13 6 3.5403 1.4449 -0.1420 14 8 4.2388 1.7310 0.8072 15 7 4.1058 1.1291 -1.3239 16 6 3.2640 0.9015 -2.5012 17 6 5.5622 1.0134 -1.4316 18 6 5.9825 -0.4278 -1.1361 19 7 7.4391 -0.5434 -1.2431 20 6 8.0542 -0.8865 -2.5277 21 6 8.2254 -0.3308 -0.1424 22 1 7.8238 -0.4908 0.8472 23 6 9.5389 0.0906 -0.2987 24 7 9.9753 0.4580 -1.4848 25 14 10.6867 0.1360 1.1742 26 1 9.9578 -0.3224 2.3841 27 1 11.8463 -0.7579 0.9260 28 1 11.1684 1.5250 1.3838 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 0.1950 2.5709 -0.8739 35 1 -1.8615 3.9233 -0.8768 36 1 -2.6628 4.9543 1.2090 37 1 -1.4159 4.6284 3.3060 38 1 3.1441 1.8366 -3.0484 39 1 3.7350 0.1604 -3.1469 40 1 2.2864 0.5383 -2.1841 41 1 5.8746 1.2834 -2.4402 42 1 6.0340 1.6839 -0.7132 43 1 5.6701 -0.6979 -0.1273 44 1 5.5108 -1.0983 -1.8544 45 1 8.3314 0.0272 -3.0533 46 1 8.9448 -1.4903 -2.3542 47 1 7.3439 -1.4517 -3.1313 48 1 10.8932 0.7522 -1.5941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482642487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:46 Heat of formation + Delta-G solvation = -51.287879 kcal Electronic energy + Delta-G solvation = -30059.514558 eV Core-core repulsion = 25838.179463 eV Total energy + Delta-G solvation = -4221.335094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -48.88888 -40.97215 -39.39644 -37.66335 -36.02797 -35.07023 -33.85163 -31.43933 -31.03274 -30.30120 -29.03459 -27.53153 -26.30835 -25.79867 -23.84833 -23.40978 -22.77212 -21.68397 -20.55650 -19.15327 -19.03435 -17.26846 -17.15732 -16.72059 -16.56911 -16.33915 -15.78013 -15.48452 -15.33244 -15.05463 -14.78844 -14.53503 -14.09773 -13.99077 -13.55853 -13.34385 -13.23184 -13.12883 -12.92873 -12.63200 -12.60876 -12.42673 -12.29790 -12.11395 -12.01147 -11.88657 -11.64457 -11.31496 -11.21878 -10.86843 -10.84088 -10.79753 -10.50230 -10.10925 -9.93822 -9.76057 -9.49363 -9.24975 -8.61861 -8.43412 -8.40659 -6.69911 -5.70391 -3.18832 0.78934 0.93725 2.45638 2.68988 3.23526 3.38967 3.43728 3.50126 3.54254 3.97078 4.26985 4.27975 4.46586 4.50699 4.54302 4.56481 4.79319 4.88618 4.92476 5.00468 5.07708 5.16638 5.30684 5.34024 5.47990 5.53714 5.58946 5.66332 5.66917 5.71119 5.76957 5.79874 5.83260 5.94972 6.03009 6.21743 6.26036 6.31479 6.56324 6.72074 6.74799 6.97886 7.06012 7.35872 7.56421 7.71939 7.88076 8.34314 8.45386 9.27590 9.88160 10.37301 11.34838 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016957 B = 0.002660 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.798684 B =10525.354694 C =11497.025491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.143 4.143 3 C 0.065 3.935 4 H 0.100 0.900 5 O -0.272 6.272 6 C 0.105 3.895 7 C -0.189 4.189 8 C -0.088 4.088 9 C -0.134 4.134 10 C -0.116 4.116 11 C 0.069 3.931 12 F -0.129 7.129 13 C 0.507 3.493 14 O -0.505 6.505 15 N -0.608 5.608 16 C 0.067 3.933 17 C 0.093 3.907 18 C 0.144 3.856 19 N -0.598 5.598 20 C 0.163 3.837 21 C -0.252 4.252 22 H 0.069 0.931 23 C 0.003 3.997 24 N -0.910 5.910 25 Si 0.905 3.095 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.289 1.289 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.035 0.965 45 H 0.029 0.971 46 H 0.044 0.956 47 H -0.004 1.004 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.742 3.997 -2.795 28.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.180 4.180 3 C 0.005 3.995 4 H 0.117 0.883 5 O -0.184 6.184 6 C 0.058 3.942 7 C -0.208 4.208 8 C -0.106 4.106 9 C -0.152 4.152 10 C -0.135 4.135 11 C 0.049 3.951 12 F -0.108 7.108 13 C 0.292 3.708 14 O -0.378 6.378 15 N -0.344 5.344 16 C -0.077 4.077 17 C -0.031 4.031 18 C 0.015 3.985 19 N -0.321 5.321 20 C 0.018 3.982 21 C -0.382 4.382 22 H 0.087 0.913 23 C -0.195 4.195 24 N -0.555 5.555 25 Si 0.735 3.265 26 H -0.202 1.202 27 H -0.216 1.216 28 H -0.216 1.216 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.063 0.937 47 H 0.015 0.985 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -26.973 4.128 -2.120 27.369 hybrid contribution 0.789 0.175 0.545 0.975 sum -26.183 4.303 -1.575 26.581 Atomic orbital electron populations 1.21900 0.94453 1.02675 1.02151 1.22072 0.97132 0.93935 1.04906 1.22531 0.94437 0.95341 0.87220 0.88309 1.86332 1.37919 1.60599 1.33567 1.19132 0.88091 0.93491 0.93495 1.21226 0.98064 1.04500 0.96969 1.20989 0.95240 0.95776 0.98607 1.20916 1.00851 1.01640 0.91807 1.21047 0.93546 0.98583 1.00312 1.17033 0.94149 1.03308 0.80626 1.91538 1.78803 1.93964 1.46464 1.20060 0.88706 0.78471 0.83600 1.90794 1.63363 1.45692 1.37992 1.47997 1.08624 1.69507 1.08322 1.21987 0.95244 1.01755 0.88683 1.22704 0.75483 1.02349 1.02518 1.21129 0.85858 0.92495 0.98992 1.43944 0.99660 1.80176 1.08290 1.20824 0.94381 0.97541 0.85450 1.19289 0.93397 1.38921 0.86601 0.91300 1.25114 0.98789 0.98814 0.96763 1.70043 1.16079 1.47969 1.21371 0.86158 0.80712 0.77307 0.82297 1.20157 1.21645 1.21607 0.92249 0.92347 0.91647 0.89639 0.89000 0.84216 0.85022 0.84894 0.84080 0.92624 0.90344 0.91212 0.91149 0.89434 0.93626 0.94629 0.95224 0.93736 0.98539 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.55 37.16 0.32 -0.87 16 2 C -0.14 -1.43 5.22 -26.73 -0.14 -1.57 16 3 C 0.06 0.80 1.71 -27.88 -0.05 0.75 16 4 H 0.10 0.92 4.46 -51.92 -0.23 0.69 16 5 O -0.27 -4.10 9.07 -39.21 -0.36 -4.45 16 6 C 0.10 1.28 5.35 -39.17 -0.21 1.07 16 7 C -0.19 -1.65 7.46 -39.45 -0.29 -1.95 16 8 C -0.09 -0.60 10.04 -39.60 -0.40 -1.00 16 9 C -0.13 -0.92 10.04 -39.57 -0.40 -1.32 16 10 C -0.12 -1.02 10.02 -39.54 -0.40 -1.42 16 11 C 0.07 0.84 7.31 -39.30 -0.29 0.56 16 12 F -0.13 -1.91 17.11 2.25 0.04 -1.87 16 13 C 0.51 8.58 6.99 -10.99 -0.08 8.51 16 14 O -0.51 -11.41 16.10 -14.04 -0.23 -11.63 16 15 N -0.61 -9.26 2.87 -181.57 -0.52 -9.78 16 16 C 0.07 0.64 9.84 59.85 0.59 1.23 16 17 C 0.09 1.81 5.78 -4.04 -0.02 1.79 16 18 C 0.14 3.05 6.03 -4.04 -0.02 3.02 16 19 N -0.60 -15.39 2.92 -181.12 -0.53 -15.92 16 20 C 0.16 3.99 9.01 59.85 0.54 4.53 16 21 C -0.25 -7.24 9.64 -15.06 -0.15 -7.39 16 22 H 0.07 2.01 7.84 -52.49 -0.41 1.60 16 23 C 0.00 0.10 5.16 -17.43 -0.09 0.01 16 24 N -0.91 -26.90 10.68 55.49 0.59 -26.31 16 25 Si 0.91 22.84 29.56 -169.99 -5.03 17.82 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H 0.06 0.54 6.47 -51.93 -0.34 0.20 16 30 H 0.06 0.34 7.15 -51.93 -0.37 -0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.09 0.77 6.07 -51.93 -0.32 0.46 16 34 H 0.14 0.95 4.81 -52.48 -0.25 0.70 16 35 H 0.13 0.54 8.06 -52.48 -0.42 0.11 16 36 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 40 H 0.07 0.49 4.52 -51.93 -0.23 0.25 16 41 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 42 H 0.09 2.08 7.35 -51.93 -0.38 1.69 16 43 H 0.05 1.03 8.04 -51.93 -0.42 0.62 16 44 H 0.04 0.66 7.87 -51.93 -0.41 0.25 16 45 H 0.03 0.77 7.37 -51.93 -0.38 0.39 16 46 H 0.04 1.17 7.35 -51.93 -0.38 0.79 16 47 H 0.00 -0.08 7.85 -51.93 -0.41 -0.49 16 48 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -35.73 388.00 -8.30 -44.03 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -7.04 Total: -3.70 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -1.08 Total: 5.97 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.46 Total: -52.01 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.58 Total: -16.08 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.03 Total: 17.82 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.73 -8.30 -44.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482642487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.256 kcal (2) G-P(sol) polarization free energy of solvation -35.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds