Wall clock time and date at job start Tue Mar 31 2020 20:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47295 * 2 1 4 4 H 1.09007 * 109.46880 * 305.74381 * 3 2 1 5 5 O 1.42900 * 109.47059 * 65.73743 * 3 2 1 6 6 C 1.35959 * 116.99851 * 263.70589 * 5 3 2 7 7 C 1.38664 * 120.06504 * 356.10264 * 6 5 3 8 8 C 1.38181 * 119.96545 * 179.72203 * 7 6 5 9 9 C 1.38253 * 120.09943 * 0.55138 * 8 7 6 10 10 C 1.38255 * 120.12863 * 359.72336 * 9 8 7 11 11 C 1.38334 * 120.02663 * 359.97438 * 10 9 8 12 12 F 1.35099 * 120.04897 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47314 * 185.73586 * 3 2 1 14 14 O 1.21279 * 120.00344 * 252.33893 * 13 3 2 15 15 N 1.34774 * 119.99749 * 72.33805 * 13 3 2 16 16 C 1.46503 * 120.00142 * 5.50825 * 15 13 3 17 17 C 1.46497 * 120.00433 * 185.50684 * 15 13 3 18 18 C 1.53002 * 109.47012 * 89.99539 * 17 15 13 19 19 N 1.46507 * 109.47192 * 180.02562 * 18 17 15 20 20 C 1.46499 * 119.99884 * 270.00457 * 19 18 17 21 21 C 1.36934 * 119.99722 * 90.00404 * 19 18 17 22 22 H 1.07997 * 120.00167 * 25.85016 * 21 19 18 23 23 C 1.38818 * 119.99865 * 205.85506 * 21 19 18 24 24 N 1.31612 * 119.99907 * 9.12711 * 23 21 19 25 25 Si 1.86796 * 120.00066 * 189.13137 * 23 21 19 26 26 H 1.48504 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47430 * 119.99426 * 25 23 21 28 28 H 1.48501 * 109.47095 * 239.99987 * 25 23 21 29 29 H 1.09004 * 109.47130 * 300.00124 * 1 2 3 30 30 H 1.09000 * 109.46963 * 59.99836 * 1 2 3 31 31 H 1.08998 * 109.47241 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46765 * 119.99650 * 2 1 3 33 33 H 1.08995 * 109.47122 * 240.00040 * 2 1 3 34 34 H 1.08003 * 120.01317 * 359.97093 * 7 6 5 35 35 H 1.08004 * 119.94595 * 180.27541 * 8 7 6 36 36 H 1.08004 * 119.93905 * 179.74354 * 9 8 7 37 37 H 1.08000 * 119.99107 * 179.97438 * 10 9 8 38 38 H 1.09007 * 109.47209 * 91.85642 * 16 15 13 39 39 H 1.08998 * 109.47305 * 211.85658 * 16 15 13 40 40 H 1.08999 * 109.47163 * 331.85832 * 16 15 13 41 41 H 1.08990 * 109.47722 * 210.00111 * 17 15 13 42 42 H 1.09006 * 109.46739 * 330.00366 * 17 15 13 43 43 H 1.08999 * 109.47621 * 300.00719 * 18 17 15 44 44 H 1.09000 * 109.46815 * 60.01179 * 18 17 15 45 45 H 1.09000 * 109.46889 * 93.88397 * 20 19 18 46 46 H 1.08995 * 109.46889 * 213.87884 * 20 19 18 47 47 H 1.09002 * 109.47463 * 333.88390 * 20 19 18 48 48 H 0.97006 * 120.00168 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5951 1.9852 -0.8342 5 8 1.6769 2.0762 1.2283 6 6 0.5439 2.8278 1.2236 7 6 -0.1581 3.0189 0.0432 8 6 -1.3125 3.7784 0.0420 9 6 -1.7625 4.3577 1.2138 10 6 -1.0626 4.1745 2.3919 11 6 0.0903 3.4100 2.4005 12 9 0.7743 3.2303 3.5515 13 6 3.5403 1.4449 -0.1420 14 8 4.2388 1.7310 0.8072 15 7 4.1058 1.1291 -1.3239 16 6 3.2640 0.9015 -2.5012 17 6 5.5622 1.0134 -1.4316 18 6 5.9825 -0.4278 -1.1361 19 7 7.4391 -0.5434 -1.2431 20 6 8.0542 -0.8865 -2.5277 21 6 8.2254 -0.3308 -0.1424 22 1 7.8238 -0.4908 0.8472 23 6 9.5389 0.0906 -0.2987 24 7 9.9753 0.4580 -1.4848 25 14 10.6867 0.1360 1.1742 26 1 9.9578 -0.3224 2.3841 27 1 11.8463 -0.7579 0.9260 28 1 11.1684 1.5250 1.3838 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 0.1950 2.5709 -0.8739 35 1 -1.8615 3.9233 -0.8768 36 1 -2.6628 4.9543 1.2090 37 1 -1.4159 4.6284 3.3060 38 1 3.1441 1.8366 -3.0484 39 1 3.7350 0.1604 -3.1469 40 1 2.2864 0.5383 -2.1841 41 1 5.8746 1.2834 -2.4402 42 1 6.0340 1.6839 -0.7132 43 1 5.6701 -0.6979 -0.1273 44 1 5.5108 -1.0983 -1.8544 45 1 8.3314 0.0272 -3.0533 46 1 8.9448 -1.4903 -2.3542 47 1 7.3439 -1.4517 -3.1313 48 1 10.8932 0.7522 -1.5941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482642487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:44 Heat of formation + Delta-G solvation = -73.486962 kcal Electronic energy + Delta-G solvation = -30060.477182 eV Core-core repulsion = 25838.179463 eV Total energy + Delta-G solvation = -4222.297719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.84945 -41.96127 -40.49319 -38.52432 -37.77691 -36.59351 -34.80342 -33.42229 -31.69327 -31.06334 -30.52126 -28.52498 -27.93097 -27.41742 -25.21867 -24.37916 -23.48852 -22.79236 -22.19985 -20.37252 -19.88547 -18.86406 -18.24015 -18.08471 -17.52661 -17.31948 -17.03560 -16.86929 -16.41200 -16.21622 -15.83560 -15.58248 -15.46836 -15.17932 -15.02784 -14.85208 -14.32312 -14.15812 -13.99468 -13.94360 -13.79457 -13.38266 -13.24347 -13.15318 -13.06029 -12.91039 -12.84552 -12.74654 -12.64449 -12.45872 -12.32817 -12.11449 -12.05016 -11.93933 -11.63615 -11.58254 -10.81312 -10.72973 -9.91749 -9.83779 -9.21621 -8.77486 -7.90304 -5.40875 0.13382 0.25717 1.37721 1.40803 1.41592 1.45436 1.51953 2.32452 2.47163 2.61300 3.22112 3.24427 3.27931 3.46900 3.64997 3.75582 3.80698 3.93705 4.09504 4.10861 4.26168 4.32368 4.34698 4.38589 4.42149 4.52208 4.58510 4.69551 4.71391 4.84291 4.88723 4.92787 4.95129 5.02750 5.09979 5.10588 5.13578 5.27055 5.30964 5.32476 5.43349 5.47557 5.59584 5.69467 5.71452 6.18249 6.29714 6.37183 7.06535 7.11603 7.80810 8.21869 9.12221 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016957 B = 0.002660 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.798684 B =10525.354694 C =11497.025491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.075 3.925 4 H 0.138 0.862 5 O -0.315 6.315 6 C 0.076 3.924 7 C -0.186 4.186 8 C -0.075 4.075 9 C -0.124 4.124 10 C -0.117 4.117 11 C 0.022 3.978 12 F -0.159 7.159 13 C 0.496 3.504 14 O -0.580 6.580 15 N -0.602 5.602 16 C 0.055 3.945 17 C 0.111 3.889 18 C 0.149 3.851 19 N -0.616 5.616 20 C 0.176 3.824 21 C -0.266 4.266 22 H 0.052 0.948 23 C -0.044 4.044 24 N -0.931 5.931 25 Si 0.963 3.037 26 H -0.276 1.276 27 H -0.280 1.280 28 H -0.290 1.290 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.169 0.831 37 H 0.156 0.844 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.020 0.980 44 H 0.075 0.925 45 H 0.009 0.991 46 H 0.016 0.984 47 H 0.040 0.960 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.629 4.106 -5.754 32.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C 0.015 3.985 4 H 0.155 0.845 5 O -0.228 6.228 6 C 0.030 3.970 7 C -0.204 4.204 8 C -0.093 4.093 9 C -0.142 4.142 10 C -0.135 4.135 11 C 0.002 3.998 12 F -0.138 7.138 13 C 0.284 3.716 14 O -0.459 6.459 15 N -0.336 5.336 16 C -0.086 4.086 17 C -0.014 4.014 18 C 0.022 3.978 19 N -0.339 5.339 20 C 0.031 3.969 21 C -0.396 4.396 22 H 0.070 0.930 23 C -0.240 4.240 24 N -0.577 5.577 25 Si 0.791 3.209 26 H -0.201 1.201 27 H -0.206 1.206 28 H -0.217 1.217 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.180 0.820 35 H 0.191 0.809 36 H 0.187 0.813 37 H 0.173 0.827 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.051 0.949 43 H 0.039 0.961 44 H 0.093 0.907 45 H 0.027 0.973 46 H 0.035 0.965 47 H 0.059 0.941 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -30.929 4.223 -5.130 31.635 hybrid contribution 1.832 0.184 1.422 2.327 sum -29.097 4.407 -3.708 29.661 Atomic orbital electron populations 1.21877 0.92077 1.03745 1.02761 1.22105 0.99051 0.92012 1.04472 1.22585 0.90622 0.97254 0.87989 0.84509 1.86275 1.39799 1.61762 1.35011 1.19463 0.88175 0.94423 0.94928 1.21512 0.98248 1.04531 0.96157 1.21512 0.94117 0.93584 1.00084 1.21412 1.01223 1.00741 0.90827 1.21351 0.92367 0.97668 1.02152 1.17690 0.95968 1.05955 0.80194 1.91446 1.79770 1.94496 1.48092 1.21079 0.90832 0.76854 0.82847 1.90756 1.65443 1.49090 1.40584 1.47967 1.07310 1.68449 1.09896 1.22441 0.95765 1.03712 0.86650 1.22067 0.78361 0.99746 1.01265 1.21155 0.83721 0.94209 0.98743 1.44131 1.01257 1.80603 1.07944 1.20626 0.94494 0.96607 0.85145 1.19388 0.94290 1.38857 0.87109 0.92986 1.25771 1.00027 0.98991 0.99233 1.70167 1.16192 1.48680 1.22655 0.85271 0.78988 0.77134 0.79493 1.20129 1.20602 1.21702 0.94053 0.89231 0.90371 0.92763 0.86770 0.81986 0.80933 0.81307 0.82650 0.90290 0.88973 0.87857 0.89896 0.94876 0.96102 0.90673 0.97254 0.96490 0.94132 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.55 71.98 0.62 -1.20 16 2 C -0.14 -2.56 5.22 30.60 0.16 -2.40 16 3 C 0.07 1.80 1.71 29.85 0.05 1.85 16 4 H 0.14 2.09 4.46 -2.38 -0.01 2.07 16 5 O -0.31 -9.95 9.07 -74.34 -0.67 -10.62 16 6 C 0.08 1.85 5.35 22.53 0.12 1.97 16 7 C -0.19 -2.65 7.46 22.36 0.17 -2.48 16 8 C -0.08 -0.66 10.04 22.26 0.22 -0.44 16 9 C -0.12 -1.22 10.04 22.28 0.22 -0.99 16 10 C -0.12 -1.92 10.02 22.30 0.22 -1.69 16 11 C 0.02 0.55 7.31 22.45 0.16 0.72 16 12 F -0.16 -5.21 17.11 44.97 0.77 -4.44 16 13 C 0.50 17.31 6.99 87.66 0.61 17.93 16 14 O -0.58 -28.48 16.10 15.72 0.25 -28.22 16 15 N -0.60 -17.86 2.87 -846.76 -2.43 -20.29 16 16 C 0.05 0.83 9.84 127.77 1.26 2.09 16 17 C 0.11 4.40 5.78 86.38 0.50 4.90 16 18 C 0.15 6.35 6.03 86.38 0.52 6.87 16 19 N -0.62 -32.27 2.92 -726.92 -2.12 -34.39 16 20 C 0.18 8.58 9.01 127.77 1.15 9.73 16 21 C -0.27 -15.84 9.64 84.04 0.81 -15.03 16 22 H 0.05 3.21 7.84 -2.91 -0.02 3.18 16 23 C -0.04 -2.64 5.16 84.86 0.44 -2.20 16 24 N -0.93 -56.34 10.68 21.65 0.23 -56.11 16 25 Si 0.96 48.34 29.56 68.60 2.03 50.37 16 26 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 27 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 28 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 29 H 0.04 0.69 6.47 -2.38 -0.02 0.67 16 30 H 0.09 0.55 7.15 -2.39 -0.02 0.53 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.11 1.53 6.07 -2.39 -0.01 1.51 16 34 H 0.16 1.39 4.81 -2.91 -0.01 1.38 16 35 H 0.17 0.18 8.06 -2.91 -0.02 0.15 16 36 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 37 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.09 1.23 8.09 -2.39 -0.02 1.21 16 40 H 0.10 0.89 4.52 -2.39 -0.01 0.88 16 41 H 0.08 3.06 8.07 -2.39 -0.02 3.04 16 42 H 0.03 1.67 7.35 -2.38 -0.02 1.65 16 43 H 0.02 0.98 8.04 -2.39 -0.02 0.96 16 44 H 0.08 2.60 7.87 -2.39 -0.02 2.58 16 45 H 0.01 0.48 7.37 -2.39 -0.02 0.47 16 46 H 0.02 0.88 7.35 -2.39 -0.02 0.86 16 47 H 0.04 1.59 7.85 -2.39 -0.02 1.57 16 48 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 Total: -1.00 -88.08 388.00 6.26 -81.82 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: 0.97 Total: 2.28 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 7.24 Total: 19.62 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -4.32 Total: -110.80 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.42 Total: -38.85 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.77 Total: -4.44 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Total: -88.08 6.26 -81.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482642487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.333 kcal (2) G-P(sol) polarization free energy of solvation -88.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds